Ggra1610.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1610.t1
Unique NameGgra1610.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000146_piloncontigtig00000146_pilon:92575..93906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog227086.JGI_V11_84883
PFAMsDUF4419
Max annot lvl2759|Eukaryota
Evalue2.73e-85
EggNOG OGs29GQM@1|root,2RPX4@2759|Eukaryota
DescriptionDomain of unknown function (DUF4419)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1610Ggra1610Gracilaria gracilis GNS1m malegenetig00000146_pilon 92575..93906 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1610.t1.start1Ggra1610.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000146_pilon 92575..92577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1610.t1.CDS1Ggra1610.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000146_pilon 92575..93906 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1610.t1.exon1Ggra1610.t1.exon1Gracilaria gracilis GNS1m maleexontig00000146_pilon 92575..93906 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1610.t1.stop1Ggra1610.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000146_pilon 93904..93906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1610.t1Ggra1610.t1Gracilaria gracilis GNS1m malepolypeptidetig00000146_pilon 92575..93906 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1610.t1 ID=Ggra1610.t1|Name=Ggra1610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=444bp
MWQQPKPSRNLRRKHDKGRRGKSQRALHRWPVGMDEAHVFDDDEEFTTRD
VNPLHHLLQNGVRFNTQTVPSLGRPLKRLTATQTAQWVAKWAKNRITIDE
EDINAIPSAFGESRFARKIRIPPSVEQYSLPANTLVDHHAQSLMQICLLA
FAEHYPLTLSPDHVWLAIAYGAAKHIDSNAEALRTRFVSFEGKKKLTVRK
DDTVVGDIPVHEWESDVFRGFSEQIRSHIGNDIHELLTTPFSTTSRAEMA
AAEITLMAATAQYFEYEMFTACGIPSLQLEGTVEDWMAVRTRAERLQEVL
LPDFAENWLPNLLPVLDEFVSAYKGNVNHSFWQRMVKIYHGSSSGATPVV
SGWINNLYPYLIDGKENKFMKAWTRSSQYHGPDPKKFPNIVSSVPVNWSY
HGADIALHFHAGYLGMTQDADTLALRPYVGWIVTRDAPNGQKQ*
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spliced messenger RNA

>Ggra1610.t1 ID=Ggra1610.t1|Name=Ggra1610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000146_pilon:92575..93906+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGCAGCAACCCAAGCCCAGCCGCAATCTGCGAAGAAAACACGATAA
GGGCAGAAGAGGGAAGTCTCAACGAGCGCTTCATCGCTGGCCAGTGGGTA
TGGACGAAGCTCACGTCTTCGATGATGATGAAGAGTTTACTACCCGCGAT
GTCAACCCTTTGCACCACTTGCTCCAAAACGGAGTCCGCTTCAACACGCA
AACGGTGCCGTCTCTCGGTAGGCCCCTCAAGCGGCTAACCGCCACGCAGA
CGGCACAATGGGTAGCGAAATGGGCCAAAAACCGAATCACCATTGACGAA
GAAGACATCAATGCGATCCCGTCAGCCTTCGGAGAAAGCCGCTTTGCCCG
AAAGATACGCATACCTCCGAGCGTGGAGCAGTACAGCCTGCCGGCGAACA
CGCTCGTCGACCACCACGCGCAGTCGCTCATGCAGATATGTCTTCTGGCG
TTTGCGGAGCACTATCCGCTTACTCTGTCGCCAGACCACGTATGGCTGGC
CATTGCGTACGGAGCTGCAAAGCATATTGACAGCAACGCAGAAGCGCTCC
GCACACGATTTGTATCCTTCGAAGGGAAGAAGAAGCTGACGGTACGCAAA
GATGATACCGTTGTGGGGGATATTCCCGTGCATGAGTGGGAGTCGGACGT
GTTTCGGGGGTTCAGCGAGCAGATACGGTCGCACATCGGTAACGATATAC
ATGAGCTTCTCACCACGCCGTTCAGCACAACTTCCAGGGCGGAGATGGCT
GCCGCAGAAATCACGCTTATGGCCGCTACTGCTCAGTATTTCGAATATGA
GATGTTTACTGCTTGCGGAATTCCTTCATTGCAGTTGGAAGGAACTGTTG
AAGACTGGATGGCGGTTCGGACACGGGCCGAGAGGTTGCAGGAAGTGCTT
TTACCGGACTTTGCCGAAAACTGGCTTCCGAACCTACTGCCTGTGCTGGA
TGAGTTCGTGTCAGCGTACAAAGGAAATGTGAATCATAGCTTCTGGCAAC
GCATGGTGAAGATATACCATGGAAGTTCGAGCGGAGCAACGCCTGTGGTG
AGCGGATGGATCAACAATCTTTATCCGTACCTTATCGACGGTAAGGAAAA
CAAATTCATGAAGGCGTGGACGCGCTCATCGCAGTACCATGGTCCGGATC
CCAAAAAGTTTCCGAACATTGTTTCGTCTGTGCCTGTGAACTGGAGCTAT
CACGGCGCAGACATCGCTCTGCATTTTCATGCTGGATACCTCGGCATGAC
CCAAGATGCTGACACGCTTGCCTTGCGCCCTTACGTCGGATGGATTGTCA
CTCGTGATGCGCCAAATGGTCAAAAGCAGTAA
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protein sequence of Ggra1610.t1

>Ggra1610.t1 ID=Ggra1610.t1|Name=Ggra1610.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=444bp
MWQQPKPSRNLRRKHDKGRRGKSQRALHRWPVGMDEAHVFDDDEEFTTRD
VNPLHHLLQNGVRFNTQTVPSLGRPLKRLTATQTAQWVAKWAKNRITIDE
EDINAIPSAFGESRFARKIRIPPSVEQYSLPANTLVDHHAQSLMQICLLA
FAEHYPLTLSPDHVWLAIAYGAAKHIDSNAEALRTRFVSFEGKKKLTVRK
DDTVVGDIPVHEWESDVFRGFSEQIRSHIGNDIHELLTTPFSTTSRAEMA
AAEITLMAATAQYFEYEMFTACGIPSLQLEGTVEDWMAVRTRAERLQEVL
LPDFAENWLPNLLPVLDEFVSAYKGNVNHSFWQRMVKIYHGSSSGATPVV
SGWINNLYPYLIDGKENKFMKAWTRSSQYHGPDPKKFPNIVSSVPVNWSY
HGADIALHFHAGYLGMTQDADTLALRPYVGWIVTRDAPNGQKQ*
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mRNA from alignment at tig00000146_pilon:92575..93906+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1610.t1 ID=Ggra1610.t1|Name=Ggra1610.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1332bp|location=Sequence derived from alignment at tig00000146_pilon:92575..93906+ (Gracilaria gracilis GNS1m male)
ATGTGGCAGCAACCCAAGCCCAGCCGCAATCTGCGAAGAAAACACGATAA
GGGCAGAAGAGGGAAGTCTCAACGAGCGCTTCATCGCTGGCCAGTGGGTA
TGGACGAAGCTCACGTCTTCGATGATGATGAAGAGTTTACTACCCGCGAT
GTCAACCCTTTGCACCACTTGCTCCAAAACGGAGTCCGCTTCAACACGCA
AACGGTGCCGTCTCTCGGTAGGCCCCTCAAGCGGCTAACCGCCACGCAGA
CGGCACAATGGGTAGCGAAATGGGCCAAAAACCGAATCACCATTGACGAA
GAAGACATCAATGCGATCCCGTCAGCCTTCGGAGAAAGCCGCTTTGCCCG
AAAGATACGCATACCTCCGAGCGTGGAGCAGTACAGCCTGCCGGCGAACA
CGCTCGTCGACCACCACGCGCAGTCGCTCATGCAGATATGTCTTCTGGCG
TTTGCGGAGCACTATCCGCTTACTCTGTCGCCAGACCACGTATGGCTGGC
CATTGCGTACGGAGCTGCAAAGCATATTGACAGCAACGCAGAAGCGCTCC
GCACACGATTTGTATCCTTCGAAGGGAAGAAGAAGCTGACGGTACGCAAA
GATGATACCGTTGTGGGGGATATTCCCGTGCATGAGTGGGAGTCGGACGT
GTTTCGGGGGTTCAGCGAGCAGATACGGTCGCACATCGGTAACGATATAC
ATGAGCTTCTCACCACGCCGTTCAGCACAACTTCCAGGGCGGAGATGGCT
GCCGCAGAAATCACGCTTATGGCCGCTACTGCTCAGTATTTCGAATATGA
GATGTTTACTGCTTGCGGAATTCCTTCATTGCAGTTGGAAGGAACTGTTG
AAGACTGGATGGCGGTTCGGACACGGGCCGAGAGGTTGCAGGAAGTGCTT
TTACCGGACTTTGCCGAAAACTGGCTTCCGAACCTACTGCCTGTGCTGGA
TGAGTTCGTGTCAGCGTACAAAGGAAATGTGAATCATAGCTTCTGGCAAC
GCATGGTGAAGATATACCATGGAAGTTCGAGCGGAGCAACGCCTGTGGTG
AGCGGATGGATCAACAATCTTTATCCGTACCTTATCGACGGTAAGGAAAA
CAAATTCATGAAGGCGTGGACGCGCTCATCGCAGTACCATGGTCCGGATC
CCAAAAAGTTTCCGAACATTGTTTCGTCTGTGCCTGTGAACTGGAGCTAT
CACGGCGCAGACATCGCTCTGCATTTTCATGCTGGATACCTCGGCATGAC
CCAAGATGCTGACACGCTTGCCTTGCGCCCTTACGTCGGATGGATTGTCA
CTCGTGATGCGCCAAATGGTCAAAAGCAGTAA
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Coding sequence (CDS) from alignment at tig00000146_pilon:92575..93906+

>Ggra1610.t1 ID=Ggra1610.t1|Name=Ggra1610.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1332bp|location=Sequence derived from alignment at tig00000146_pilon:92575..93906+ (Gracilaria gracilis GNS1m male)
ATGTGGCAGCAACCCAAGCCCAGCCGCAATCTGCGAAGAAAACACGATAA
GGGCAGAAGAGGGAAGTCTCAACGAGCGCTTCATCGCTGGCCAGTGGGTA
TGGACGAAGCTCACGTCTTCGATGATGATGAAGAGTTTACTACCCGCGAT
GTCAACCCTTTGCACCACTTGCTCCAAAACGGAGTCCGCTTCAACACGCA
AACGGTGCCGTCTCTCGGTAGGCCCCTCAAGCGGCTAACCGCCACGCAGA
CGGCACAATGGGTAGCGAAATGGGCCAAAAACCGAATCACCATTGACGAA
GAAGACATCAATGCGATCCCGTCAGCCTTCGGAGAAAGCCGCTTTGCCCG
AAAGATACGCATACCTCCGAGCGTGGAGCAGTACAGCCTGCCGGCGAACA
CGCTCGTCGACCACCACGCGCAGTCGCTCATGCAGATATGTCTTCTGGCG
TTTGCGGAGCACTATCCGCTTACTCTGTCGCCAGACCACGTATGGCTGGC
CATTGCGTACGGAGCTGCAAAGCATATTGACAGCAACGCAGAAGCGCTCC
GCACACGATTTGTATCCTTCGAAGGGAAGAAGAAGCTGACGGTACGCAAA
GATGATACCGTTGTGGGGGATATTCCCGTGCATGAGTGGGAGTCGGACGT
GTTTCGGGGGTTCAGCGAGCAGATACGGTCGCACATCGGTAACGATATAC
ATGAGCTTCTCACCACGCCGTTCAGCACAACTTCCAGGGCGGAGATGGCT
GCCGCAGAAATCACGCTTATGGCCGCTACTGCTCAGTATTTCGAATATGA
GATGTTTACTGCTTGCGGAATTCCTTCATTGCAGTTGGAAGGAACTGTTG
AAGACTGGATGGCGGTTCGGACACGGGCCGAGAGGTTGCAGGAAGTGCTT
TTACCGGACTTTGCCGAAAACTGGCTTCCGAACCTACTGCCTGTGCTGGA
TGAGTTCGTGTCAGCGTACAAAGGAAATGTGAATCATAGCTTCTGGCAAC
GCATGGTGAAGATATACCATGGAAGTTCGAGCGGAGCAACGCCTGTGGTG
AGCGGATGGATCAACAATCTTTATCCGTACCTTATCGACGGTAAGGAAAA
CAAATTCATGAAGGCGTGGACGCGCTCATCGCAGTACCATGGTCCGGATC
CCAAAAAGTTTCCGAACATTGTTTCGTCTGTGCCTGTGAACTGGAGCTAT
CACGGCGCAGACATCGCTCTGCATTTTCATGCTGGATACCTCGGCATGAC
CCAAGATGCTGACACGCTTGCCTTGCGCCCTTACGTCGGATGGATTGTCA
CTCGTGATGCGCCAAATGGTCAAAAGCAGTAA
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