Ggra1604.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1604.t1
Unique Name	Ggra1604.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	487

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000146_pilon	contig	tig00000146_pilon:29176..30636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1604	Ggra1604	Gracilaria gracilis GNS1m male	gene	tig00000146_pilon 29176..30636 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1604.t1.start1	Ggra1604.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000146_pilon 29176..29178 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1604.t1.CDS1	Ggra1604.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000146_pilon 29176..30636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1604.t1.exon1	Ggra1604.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000146_pilon 29176..30636 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1604.t1.stop1	Ggra1604.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000146_pilon 30634..30636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1604.t1	Ggra1604.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000146_pilon 29176..30636 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000146_pilon:29176..30636+
coding sequence from alignment at tig00000146_pilon:29176..30636+

mRNA sequence

>Ggra1604.t1 ID=Ggra1604.t1|Name=Ggra1604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MALPAGKEHVLPKAYQEQIEKDILARMRQTPTQTHGDDPLHPLSTKLLHN
GNKNVMSSHLSFPLEAPRKASTSQCETKSSPVPIAHASASRNRKRKLVDP
HTLPSKTIKSSTSAHDAATMRSIRPCLKIRPSSPCSREMVEADKSSASSP
NSRQRRLVNRSRPIRECSVQWRAEKNVNFSRGTKRPAADALDSPTPCKKE
KNSHKPSTESERIKVCGPHPHFEMDNAKLLYESCRGLPTSSSEPVQSVPQ
TLQTKGYKTNKSIGGKKLQSIATVKNDTTQPSEWKKKNRSERLQESIESD
LNSPTSLNRSDTRAQLSQKPQCIKKNGPGRSVLVNRPKLRTKSSSSAKGN
ASTHGTSGGLGDSFPKNTRSSSKQLGDHWKSVEIDRAGVKPEQRGRKRRV
ENVMEGIGLSSTKPKPSPNGVTKLVSGKLHAPTAIDEERRAWRRASAKGK
RSNRCMNKKKGTFEISRAEWDSLPVLSDGKGPTIWK*

spliced messenger RNA

>Ggra1604.t1 ID=Ggra1604.t1|Name=Ggra1604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000146_pilon:29176..30636+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTACCGGCAGGAAAAGAGCATGTTCTTCCAAAGGCATATCAAGA
GCAGATTGAGAAGGACATTCTCGCTCGAATGCGGCAAACGCCCACACAAA
CACATGGGGACGACCCCTTACATCCGCTTTCCACGAAATTGTTACACAAC
GGAAACAAGAATGTAATGTCTTCACACCTCTCGTTTCCTCTTGAAGCCCC
AAGAAAAGCTAGCACATCTCAATGTGAGACGAAGTCATCGCCCGTACCGA
TCGCCCACGCGTCAGCCTCAAGGAACCGCAAACGAAAACTAGTCGACCCG
CACACGCTTCCATCAAAGACGATAAAGAGCTCTACAAGTGCTCACGACGC
AGCAACTATGCGATCGATTCGTCCATGTCTCAAGATCAGGCCATCATCTC
CATGTTCCCGAGAGATGGTTGAGGCTGACAAATCCAGCGCCTCAAGTCCA
AACTCTCGTCAAAGGCGTCTTGTCAATCGCTCACGCCCCATTCGTGAATG
CTCAGTGCAATGGAGGGCGGAGAAGAACGTAAATTTCTCTCGTGGAACGA
AAAGGCCTGCCGCAGATGCTTTGGATTCTCCGACACCATGCAAGAAGGAG
AAAAATTCACACAAGCCATCAACGGAATCCGAACGAATCAAAGTCTGTGG
ACCTCATCCCCATTTTGAAATGGACAATGCGAAGCTTCTTTACGAAAGCT
GCAGGGGTTTGCCAACATCTTCTAGTGAACCTGTACAATCAGTCCCACAG
ACACTACAAACAAAAGGTTACAAGACGAATAAAAGCATTGGAGGAAAGAA
GCTGCAATCCATCGCTACTGTGAAGAACGATACAACGCAGCCGTCAGAGT
GGAAGAAGAAGAATCGCTCAGAGCGTCTCCAGGAGTCAATTGAGAGTGAT
TTGAACTCGCCAACGAGCCTAAATCGATCAGATACTCGTGCACAACTGTC
ACAAAAGCCTCAGTGCATCAAGAAAAATGGTCCTGGACGAAGCGTTTTGG
TAAACCGGCCAAAGTTGCGTACAAAATCATCGAGCTCTGCGAAAGGGAAT
GCCTCAACGCATGGCACATCTGGCGGTTTGGGTGATTCGTTCCCAAAGAA
CACACGAAGTTCGTCGAAACAGTTAGGAGACCATTGGAAAAGTGTCGAAA
TCGATCGAGCTGGGGTGAAGCCCGAACAGCGTGGGAGAAAACGCCGTGTG
GAAAACGTGATGGAAGGAATCGGGCTGAGCTCGACGAAGCCGAAGCCATC
ACCGAATGGCGTTACGAAGCTGGTGAGCGGGAAGCTTCATGCACCGACGG
CCATTGACGAGGAAAGAAGGGCGTGGAGGCGGGCGTCGGCGAAGGGGAAA
CGGAGCAATCGATGCATGAACAAAAAGAAGGGTACATTCGAGATCAGCAG
GGCTGAGTGGGACAGTCTGCCTGTGCTCAGCGACGGCAAGGGCCCCACGA
TTTGGAAATGA

protein sequence of Ggra1604.t1

>Ggra1604.t1 ID=Ggra1604.t1|Name=Ggra1604.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MALPAGKEHVLPKAYQEQIEKDILARMRQTPTQTHGDDPLHPLSTKLLHN
GNKNVMSSHLSFPLEAPRKASTSQCETKSSPVPIAHASASRNRKRKLVDP
HTLPSKTIKSSTSAHDAATMRSIRPCLKIRPSSPCSREMVEADKSSASSP
NSRQRRLVNRSRPIRECSVQWRAEKNVNFSRGTKRPAADALDSPTPCKKE
KNSHKPSTESERIKVCGPHPHFEMDNAKLLYESCRGLPTSSSEPVQSVPQ
TLQTKGYKTNKSIGGKKLQSIATVKNDTTQPSEWKKKNRSERLQESIESD
LNSPTSLNRSDTRAQLSQKPQCIKKNGPGRSVLVNRPKLRTKSSSSAKGN
ASTHGTSGGLGDSFPKNTRSSSKQLGDHWKSVEIDRAGVKPEQRGRKRRV
ENVMEGIGLSSTKPKPSPNGVTKLVSGKLHAPTAIDEERRAWRRASAKGK
RSNRCMNKKKGTFEISRAEWDSLPVLSDGKGPTIWK*

mRNA from alignment at tig00000146_pilon:29176..30636+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1604.t1 ID=Ggra1604.t1|Name=Ggra1604.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000146_pilon:29176..30636+ (Gracilaria gracilis GNS1m male)
ATGGCACTACCGGCAGGAAAAGAGCATGTTCTTCCAAAGGCATATCAAGA
GCAGATTGAGAAGGACATTCTCGCTCGAATGCGGCAAACGCCCACACAAA
CACATGGGGACGACCCCTTACATCCGCTTTCCACGAAATTGTTACACAAC
GGAAACAAGAATGTAATGTCTTCACACCTCTCGTTTCCTCTTGAAGCCCC
AAGAAAAGCTAGCACATCTCAATGTGAGACGAAGTCATCGCCCGTACCGA
TCGCCCACGCGTCAGCCTCAAGGAACCGCAAACGAAAACTAGTCGACCCG
CACACGCTTCCATCAAAGACGATAAAGAGCTCTACAAGTGCTCACGACGC
AGCAACTATGCGATCGATTCGTCCATGTCTCAAGATCAGGCCATCATCTC
CATGTTCCCGAGAGATGGTTGAGGCTGACAAATCCAGCGCCTCAAGTCCA
AACTCTCGTCAAAGGCGTCTTGTCAATCGCTCACGCCCCATTCGTGAATG
CTCAGTGCAATGGAGGGCGGAGAAGAACGTAAATTTCTCTCGTGGAACGA
AAAGGCCTGCCGCAGATGCTTTGGATTCTCCGACACCATGCAAGAAGGAG
AAAAATTCACACAAGCCATCAACGGAATCCGAACGAATCAAAGTCTGTGG
ACCTCATCCCCATTTTGAAATGGACAATGCGAAGCTTCTTTACGAAAGCT
GCAGGGGTTTGCCAACATCTTCTAGTGAACCTGTACAATCAGTCCCACAG
ACACTACAAACAAAAGGTTACAAGACGAATAAAAGCATTGGAGGAAAGAA
GCTGCAATCCATCGCTACTGTGAAGAACGATACAACGCAGCCGTCAGAGT
GGAAGAAGAAGAATCGCTCAGAGCGTCTCCAGGAGTCAATTGAGAGTGAT
TTGAACTCGCCAACGAGCCTAAATCGATCAGATACTCGTGCACAACTGTC
ACAAAAGCCTCAGTGCATCAAGAAAAATGGTCCTGGACGAAGCGTTTTGG
TAAACCGGCCAAAGTTGCGTACAAAATCATCGAGCTCTGCGAAAGGGAAT
GCCTCAACGCATGGCACATCTGGCGGTTTGGGTGATTCGTTCCCAAAGAA
CACACGAAGTTCGTCGAAACAGTTAGGAGACCATTGGAAAAGTGTCGAAA
TCGATCGAGCTGGGGTGAAGCCCGAACAGCGTGGGAGAAAACGCCGTGTG
GAAAACGTGATGGAAGGAATCGGGCTGAGCTCGACGAAGCCGAAGCCATC
ACCGAATGGCGTTACGAAGCTGGTGAGCGGGAAGCTTCATGCACCGACGG
CCATTGACGAGGAAAGAAGGGCGTGGAGGCGGGCGTCGGCGAAGGGGAAA
CGGAGCAATCGATGCATGAACAAAAAGAAGGGTACATTCGAGATCAGCAG
GGCTGAGTGGGACAGTCTGCCTGTGCTCAGCGACGGCAAGGGCCCCACGA
TTTGGAAATGA

Coding sequence (CDS) from alignment at tig00000146_pilon:29176..30636+

>Ggra1604.t1 ID=Ggra1604.t1|Name=Ggra1604.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000146_pilon:29176..30636+ (Gracilaria gracilis GNS1m male)
ATGGCACTACCGGCAGGAAAAGAGCATGTTCTTCCAAAGGCATATCAAGA
GCAGATTGAGAAGGACATTCTCGCTCGAATGCGGCAAACGCCCACACAAA
CACATGGGGACGACCCCTTACATCCGCTTTCCACGAAATTGTTACACAAC
GGAAACAAGAATGTAATGTCTTCACACCTCTCGTTTCCTCTTGAAGCCCC
AAGAAAAGCTAGCACATCTCAATGTGAGACGAAGTCATCGCCCGTACCGA
TCGCCCACGCGTCAGCCTCAAGGAACCGCAAACGAAAACTAGTCGACCCG
CACACGCTTCCATCAAAGACGATAAAGAGCTCTACAAGTGCTCACGACGC
AGCAACTATGCGATCGATTCGTCCATGTCTCAAGATCAGGCCATCATCTC
CATGTTCCCGAGAGATGGTTGAGGCTGACAAATCCAGCGCCTCAAGTCCA
AACTCTCGTCAAAGGCGTCTTGTCAATCGCTCACGCCCCATTCGTGAATG
CTCAGTGCAATGGAGGGCGGAGAAGAACGTAAATTTCTCTCGTGGAACGA
AAAGGCCTGCCGCAGATGCTTTGGATTCTCCGACACCATGCAAGAAGGAG
AAAAATTCACACAAGCCATCAACGGAATCCGAACGAATCAAAGTCTGTGG
ACCTCATCCCCATTTTGAAATGGACAATGCGAAGCTTCTTTACGAAAGCT
GCAGGGGTTTGCCAACATCTTCTAGTGAACCTGTACAATCAGTCCCACAG
ACACTACAAACAAAAGGTTACAAGACGAATAAAAGCATTGGAGGAAAGAA
GCTGCAATCCATCGCTACTGTGAAGAACGATACAACGCAGCCGTCAGAGT
GGAAGAAGAAGAATCGCTCAGAGCGTCTCCAGGAGTCAATTGAGAGTGAT
TTGAACTCGCCAACGAGCCTAAATCGATCAGATACTCGTGCACAACTGTC
ACAAAAGCCTCAGTGCATCAAGAAAAATGGTCCTGGACGAAGCGTTTTGG
TAAACCGGCCAAAGTTGCGTACAAAATCATCGAGCTCTGCGAAAGGGAAT
GCCTCAACGCATGGCACATCTGGCGGTTTGGGTGATTCGTTCCCAAAGAA
CACACGAAGTTCGTCGAAACAGTTAGGAGACCATTGGAAAAGTGTCGAAA
TCGATCGAGCTGGGGTGAAGCCCGAACAGCGTGGGAGAAAACGCCGTGTG
GAAAACGTGATGGAAGGAATCGGGCTGAGCTCGACGAAGCCGAAGCCATC
ACCGAATGGCGTTACGAAGCTGGTGAGCGGGAAGCTTCATGCACCGACGG
CCATTGACGAGGAAAGAAGGGCGTGGAGGCGGGCGTCGGCGAAGGGGAAA
CGGAGCAATCGATGCATGAACAAAAAGAAGGGTACATTCGAGATCAGCAG
GGCTGAGTGGGACAGTCTGCCTGTGCTCAGCGACGGCAAGGGCCCCACGA
TTTGGAAATGA