Ggra1602.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1602.t1
Unique Name	Ggra1602.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	372

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000133_pilon	contig	tig00000133_pilon:5244..6359 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1602	Ggra1602	Gracilaria gracilis GNS1m male	gene	tig00000133_pilon 5244..6359 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1602.t1.start1	Ggra1602.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000133_pilon 5244..5246 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1602.t1.CDS1	Ggra1602.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000133_pilon 5244..6359 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1602.t1.exon1	Ggra1602.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000133_pilon 5244..6359 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1602.t1.stop1	Ggra1602.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000133_pilon 6357..6359 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1602.t1	Ggra1602.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000133_pilon 5244..6359 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000133_pilon:5244..6359+
coding sequence from alignment at tig00000133_pilon:5244..6359+

mRNA sequence

>Ggra1602.t1 ID=Ggra1602.t1|Name=Ggra1602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=372bp
MTSLSYPVPGQPYLVRNPLPLETVKELLKDISFSLRLCDDKINFGVYAAT
AHMDTSFTFYDRFPPETSIWVINHVKPKTPEKSVRHTLYKPQELLVALLQ
AQVAFMVFNEGDHWSLWVAAGLPELYKHITIDGREALPAPLLTIAHFDSS
SARGHWEFRSGVAAWYANAARVAAKNVENRDIREEVETFFKHQTKFVSVS
VPQQQSTELNCGWRVINALSEVLKNRKGLQEFFSVGLNSPLHGTQQRVVE
VIKTMIPRDLVGTSRIELADCIVCGDTRAHSSVKPCPLDGELICSSCLSK
YKECKIPVFQFDGDEGKAQNTIRRVPGGRELEVYGFRRHKNNRKRVYSRP
YLRPKKVSKPDGYGGEERERP*

spliced messenger RNA

>Ggra1602.t1 ID=Ggra1602.t1|Name=Ggra1602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000133_pilon:5244..6359+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA

protein sequence of Ggra1602.t1

>Ggra1602.t1 ID=Ggra1602.t1|Name=Ggra1602.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=372bp
MTSLSYPVPGQPYLVRNPLPLETVKELLKDISFSLRLCDDKINFGVYAAT
AHMDTSFTFYDRFPPETSIWVINHVKPKTPEKSVRHTLYKPQELLVALLQ
AQVAFMVFNEGDHWSLWVAAGLPELYKHITIDGREALPAPLLTIAHFDSS
SARGHWEFRSGVAAWYANAARVAAKNVENRDIREEVETFFKHQTKFVSVS
VPQQQSTELNCGWRVINALSEVLKNRKGLQEFFSVGLNSPLHGTQQRVVE
VIKTMIPRDLVGTSRIELADCIVCGDTRAHSSVKPCPLDGELICSSCLSK
YKECKIPVFQFDGDEGKAQNTIRRVPGGRELEVYGFRRHKNNRKRVYSRP
YLRPKKVSKPDGYGGEERERP*

mRNA from alignment at tig00000133_pilon:5244..6359+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1602.t1 ID=Ggra1602.t1|Name=Ggra1602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1116bp|location=Sequence derived from alignment at tig00000133_pilon:5244..6359+ (Gracilaria gracilis GNS1m male)
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA

Coding sequence (CDS) from alignment at tig00000133_pilon:5244..6359+

>Ggra1602.t1 ID=Ggra1602.t1|Name=Ggra1602.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1116bp|location=Sequence derived from alignment at tig00000133_pilon:5244..6359+ (Gracilaria gracilis GNS1m male)
ATGACGAGCCTTTCGTATCCTGTTCCCGGACAACCATATCTGGTGCGAAA
TCCTCTTCCCCTCGAGACCGTCAAGGAACTTTTGAAGGACATAAGTTTCT
CCTTGCGGCTGTGTGATGACAAAATCAACTTTGGTGTTTACGCTGCGACG
GCACACATGGACACAAGTTTTACATTCTACGACCGATTCCCACCGGAAAC
CAGTATTTGGGTTATTAATCATGTTAAACCAAAGACGCCAGAAAAGTCGG
TTCGGCACACCTTATACAAACCGCAGGAACTGCTGGTGGCCTTACTACAA
GCACAAGTTGCTTTTATGGTATTTAACGAAGGTGATCATTGGTCTCTATG
GGTTGCAGCGGGACTCCCAGAGCTGTACAAACACATCACGATTGATGGAA
GAGAAGCTCTACCGGCTCCCCTTCTAACAATTGCTCACTTTGATAGCAGC
TCAGCACGTGGGCACTGGGAGTTTCGTTCGGGTGTGGCTGCTTGGTATGC
AAATGCAGCAAGAGTGGCTGCCAAAAATGTAGAGAATCGCGACATTAGAG
AAGAAGTTGAGACCTTCTTCAAGCATCAAACCAAATTTGTATCGGTTTCC
GTGCCACAGCAGCAATCAACAGAGCTGAACTGCGGCTGGCGGGTTATTAA
TGCATTGAGCGAAGTCCTGAAGAACCGCAAAGGATTGCAAGAATTCTTTT
CTGTAGGTCTCAATAGTCCATTGCATGGTACGCAGCAACGTGTTGTTGAA
GTTATCAAGACCATGATACCGAGAGACCTTGTCGGGACCTCTCGTATAGA
ACTAGCAGACTGCATAGTTTGCGGAGATACAAGGGCACATAGCAGCGTCA
AACCATGCCCCTTAGACGGAGAGCTCATATGTAGCTCATGTCTTTCTAAG
TACAAGGAATGTAAGATTCCAGTATTTCAGTTCGACGGGGATGAAGGAAA
GGCGCAAAATACTATCCGAAGAGTTCCTGGAGGCCGGGAACTTGAGGTCT
ATGGATTTCGTCGTCATAAGAACAACCGCAAGCGAGTTTACAGCCGCCCC
TATCTGAGACCGAAGAAGGTTTCTAAGCCAGATGGCTATGGCGGTGAAGA
ACGAGAACGTCCGTAA