Ggra1597.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1597.t1
Unique NameGgra1597.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:739329..739982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1597Ggra1597Gracilaria gracilis GNS1m malegenetig00000844_pilon 739329..739982 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1597.t1.start1Ggra1597.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 739329..739331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1597.t1.CDS1Ggra1597.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 739329..739982 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1597.t1.exon1Ggra1597.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 739329..739982 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1597.t1.stop1Ggra1597.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 739980..739982 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1597.t1Ggra1597.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 739329..739982 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1597.t1 ID=Ggra1597.t1|Name=Ggra1597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MQSSQVICGSQRLFSYNNSQRVKRPNATKYCKPSNLDTQLLFEDGEAISD
DCVLYDFDGDKLFLSESLYLEYFNDEMKFLVTKVYLDVQPLLPTILDAFV
QIYSSYQGEEELHIRRKVFSNIVQTKCQFVLRKIEGTEVPGVVLIVIASL
WGFIAIICVVVIVVLRNQSFINLSDPFWWAGNGAKINSKSRKMVTIAISK
EVGEVIVSNLPALSSTC*
back to top

spliced messenger RNA

>Ggra1597.t1 ID=Ggra1597.t1|Name=Ggra1597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000844_pilon:739329..739982+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCATCTCAAGTTATCTGTGGCTCCCAGCGACTGTTTTCTTACAA
CAACTCGCAACGTGTGAAAAGGCCTAACGCAACCAAGTACTGCAAACCTT
CCAACTTGGACACTCAATTGCTATTCGAAGACGGAGAAGCGATTTCCGAC
GATTGTGTGTTGTACGATTTTGATGGAGACAAACTATTTTTAAGTGAATC
TCTGTATCTCGAATATTTCAATGACGAGATGAAGTTTCTTGTCACTAAAG
TATATCTTGACGTTCAGCCGTTGTTACCCACAATTTTGGATGCGTTTGTA
CAGATTTATTCTTCTTATCAAGGGGAGGAAGAGCTTCATATTCGTCGAAA
GGTGTTCAGTAATATTGTTCAAACGAAATGCCAGTTTGTTCTGCGTAAAA
TTGAAGGCACGGAGGTTCCCGGGGTTGTTTTGATTGTTATTGCCTCCTTG
TGGGGCTTTATTGCTATCATCTGTGTGGTAGTGATCGTTGTGTTGCGAAA
TCAGTCGTTCATTAATCTTAGCGACCCATTCTGGTGGGCTGGCAATGGCG
CCAAAATCAACTCCAAGTCAAGGAAGATGGTAACGATAGCGATTTCCAAA
GAAGTAGGGGAGGTGATTGTCTCCAATTTGCCCGCGCTTTCTTCCACTTG
TTAG
back to top

protein sequence of Ggra1597.t1

>Ggra1597.t1 ID=Ggra1597.t1|Name=Ggra1597.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MQSSQVICGSQRLFSYNNSQRVKRPNATKYCKPSNLDTQLLFEDGEAISD
DCVLYDFDGDKLFLSESLYLEYFNDEMKFLVTKVYLDVQPLLPTILDAFV
QIYSSYQGEEELHIRRKVFSNIVQTKCQFVLRKIEGTEVPGVVLIVIASL
WGFIAIICVVVIVVLRNQSFINLSDPFWWAGNGAKINSKSRKMVTIAISK
EVGEVIVSNLPALSSTC*
back to top

mRNA from alignment at tig00000844_pilon:739329..739982+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1597.t1 ID=Ggra1597.t1|Name=Ggra1597.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000844_pilon:739329..739982+ (Gracilaria gracilis GNS1m male)
ATGCAATCATCTCAAGTTATCTGTGGCTCCCAGCGACTGTTTTCTTACAA
CAACTCGCAACGTGTGAAAAGGCCTAACGCAACCAAGTACTGCAAACCTT
CCAACTTGGACACTCAATTGCTATTCGAAGACGGAGAAGCGATTTCCGAC
GATTGTGTGTTGTACGATTTTGATGGAGACAAACTATTTTTAAGTGAATC
TCTGTATCTCGAATATTTCAATGACGAGATGAAGTTTCTTGTCACTAAAG
TATATCTTGACGTTCAGCCGTTGTTACCCACAATTTTGGATGCGTTTGTA
CAGATTTATTCTTCTTATCAAGGGGAGGAAGAGCTTCATATTCGTCGAAA
GGTGTTCAGTAATATTGTTCAAACGAAATGCCAGTTTGTTCTGCGTAAAA
TTGAAGGCACGGAGGTTCCCGGGGTTGTTTTGATTGTTATTGCCTCCTTG
TGGGGCTTTATTGCTATCATCTGTGTGGTAGTGATCGTTGTGTTGCGAAA
TCAGTCGTTCATTAATCTTAGCGACCCATTCTGGTGGGCTGGCAATGGCG
CCAAAATCAACTCCAAGTCAAGGAAGATGGTAACGATAGCGATTTCCAAA
GAAGTAGGGGAGGTGATTGTCTCCAATTTGCCCGCGCTTTCTTCCACTTG
TTAG
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:739329..739982+

>Ggra1597.t1 ID=Ggra1597.t1|Name=Ggra1597.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000844_pilon:739329..739982+ (Gracilaria gracilis GNS1m male)
ATGCAATCATCTCAAGTTATCTGTGGCTCCCAGCGACTGTTTTCTTACAA
CAACTCGCAACGTGTGAAAAGGCCTAACGCAACCAAGTACTGCAAACCTT
CCAACTTGGACACTCAATTGCTATTCGAAGACGGAGAAGCGATTTCCGAC
GATTGTGTGTTGTACGATTTTGATGGAGACAAACTATTTTTAAGTGAATC
TCTGTATCTCGAATATTTCAATGACGAGATGAAGTTTCTTGTCACTAAAG
TATATCTTGACGTTCAGCCGTTGTTACCCACAATTTTGGATGCGTTTGTA
CAGATTTATTCTTCTTATCAAGGGGAGGAAGAGCTTCATATTCGTCGAAA
GGTGTTCAGTAATATTGTTCAAACGAAATGCCAGTTTGTTCTGCGTAAAA
TTGAAGGCACGGAGGTTCCCGGGGTTGTTTTGATTGTTATTGCCTCCTTG
TGGGGCTTTATTGCTATCATCTGTGTGGTAGTGATCGTTGTGTTGCGAAA
TCAGTCGTTCATTAATCTTAGCGACCCATTCTGGTGGGCTGGCAATGGCG
CCAAAATCAACTCCAAGTCAAGGAAGATGGTAACGATAGCGATTTCCAAA
GAAGTAGGGGAGGTGATTGTCTCCAATTTGCCCGCGCTTTCTTCCACTTG
TTAG
back to top