Ggra1596.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1596.t1
Unique NameGgra1596.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:735789..736316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9TVN8
PFAMsAbhydrolase_1
Max annot lvl4751|Fungi
KEGG rclassRC00037,RC00094
KEGG koko:K13535
KEGG ReactionR09038
KEGG Pathwayko00564,map00564
GOsGO:0003674,GO:0003824,GO:0004620,GO:0004623,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006629,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0009987,GO:0016020,GO:0016043,GO:0016298,GO:0016787,GO:0016788,GO:0019637,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032048,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046486,GO:0052689,GO:0061024,GO:0071704,GO:0071840
Evalue4.28e-27
EggNOG OGsCOG0596@1|root,KOG4409@2759|Eukaryota,38H8B@33154|Opisthokonta,3NWMD@4751|Fungi
DescriptionAlpha beta hydrolase
COG categoryEH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1596Ggra1596Gracilaria gracilis GNS1m malegenetig00000844_pilon 735789..736316 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1596.t1.stop1Ggra1596.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 735789..735791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1596.t1.CDS1Ggra1596.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 735789..736316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1596.t1.exon1Ggra1596.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 735789..736316 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1596.t1.start1Ggra1596.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 736314..736316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1596.t1Ggra1596.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 735789..736316 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1596.t1 ID=Ggra1596.t1|Name=Ggra1596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MWDWGFTPQYFIRQAGTSLGRKLARRFIEPRFSFQSNGTKDAFIEYFYQI
SVADAAGEHSLSTILESGAYAKKPLVERMVRLRTPTSFLYGDGDWMNSQY
TEKVCERMNAPVSVHIIKGAGHHVYYDNVQAFTKLILESCGRIATEESSQ
ASLFVPDFDKQPSTKVVQPTQHQTP*
back to top

spliced messenger RNA

>Ggra1596.t1 ID=Ggra1596.t1|Name=Ggra1596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000844_pilon:735789..736316- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGACTGGGGTTTTACGCCCCAATACTTCATCCGTCAGGCGGGTAC
AAGTCTCGGTCGCAAGTTGGCGCGACGTTTCATAGAACCGAGATTCAGTT
TTCAGTCCAATGGAACCAAAGATGCTTTCATCGAGTATTTCTATCAGATA
TCAGTTGCAGATGCTGCTGGAGAGCATTCGCTCAGCACTATCTTAGAGAG
CGGTGCGTATGCCAAGAAACCGCTGGTGGAACGAATGGTCAGGCTGCGAA
CTCCCACATCGTTTCTTTACGGTGATGGCGATTGGATGAACTCTCAATAC
ACTGAAAAGGTTTGCGAGCGAATGAATGCCCCGGTCTCGGTACACATTAT
CAAGGGGGCCGGTCATCATGTATATTATGATAACGTGCAGGCGTTTACAA
AACTCATTTTGGAAAGCTGTGGACGCATCGCGACCGAGGAGTCATCGCAA
GCGTCATTGTTTGTCCCTGATTTTGACAAACAACCTAGCACTAAGGTAGT
TCAACCCACTCAACACCAAACACCCTGA
back to top

protein sequence of Ggra1596.t1

>Ggra1596.t1 ID=Ggra1596.t1|Name=Ggra1596.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MWDWGFTPQYFIRQAGTSLGRKLARRFIEPRFSFQSNGTKDAFIEYFYQI
SVADAAGEHSLSTILESGAYAKKPLVERMVRLRTPTSFLYGDGDWMNSQY
TEKVCERMNAPVSVHIIKGAGHHVYYDNVQAFTKLILESCGRIATEESSQ
ASLFVPDFDKQPSTKVVQPTQHQTP*
back to top

mRNA from alignment at tig00000844_pilon:735789..736316-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1596.t1 ID=Ggra1596.t1|Name=Ggra1596.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000844_pilon:735789..736316- (Gracilaria gracilis GNS1m male)
ATGTGGGACTGGGGTTTTACGCCCCAATACTTCATCCGTCAGGCGGGTAC
AAGTCTCGGTCGCAAGTTGGCGCGACGTTTCATAGAACCGAGATTCAGTT
TTCAGTCCAATGGAACCAAAGATGCTTTCATCGAGTATTTCTATCAGATA
TCAGTTGCAGATGCTGCTGGAGAGCATTCGCTCAGCACTATCTTAGAGAG
CGGTGCGTATGCCAAGAAACCGCTGGTGGAACGAATGGTCAGGCTGCGAA
CTCCCACATCGTTTCTTTACGGTGATGGCGATTGGATGAACTCTCAATAC
ACTGAAAAGGTTTGCGAGCGAATGAATGCCCCGGTCTCGGTACACATTAT
CAAGGGGGCCGGTCATCATGTATATTATGATAACGTGCAGGCGTTTACAA
AACTCATTTTGGAAAGCTGTGGACGCATCGCGACCGAGGAGTCATCGCAA
GCGTCATTGTTTGTCCCTGATTTTGACAAACAACCTAGCACTAAGGTAGT
TCAACCCACTCAACACCAAACACCCTGA
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:735789..736316-

>Ggra1596.t1 ID=Ggra1596.t1|Name=Ggra1596.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000844_pilon:735789..736316- (Gracilaria gracilis GNS1m male)
ATGTGGGACTGGGGTTTTACGCCCCAATACTTCATCCGTCAGGCGGGTAC
AAGTCTCGGTCGCAAGTTGGCGCGACGTTTCATAGAACCGAGATTCAGTT
TTCAGTCCAATGGAACCAAAGATGCTTTCATCGAGTATTTCTATCAGATA
TCAGTTGCAGATGCTGCTGGAGAGCATTCGCTCAGCACTATCTTAGAGAG
CGGTGCGTATGCCAAGAAACCGCTGGTGGAACGAATGGTCAGGCTGCGAA
CTCCCACATCGTTTCTTTACGGTGATGGCGATTGGATGAACTCTCAATAC
ACTGAAAAGGTTTGCGAGCGAATGAATGCCCCGGTCTCGGTACACATTAT
CAAGGGGGCCGGTCATCATGTATATTATGATAACGTGCAGGCGTTTACAA
AACTCATTTTGGAAAGCTGTGGACGCATCGCGACCGAGGAGTCATCGCAA
GCGTCATTGTTTGTCCCTGATTTTGACAAACAACCTAGCACTAAGGTAGT
TCAACCCACTCAACACCAAACACCCTGA
back to top