Ggra1593.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1593.t1
Unique Name	Ggra1593.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	563

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:710232..712037 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122223.KB890687_gene2722
Max annot lvl	2\|Bacteria
Evalue	4.16e-35
EggNOG OGs	2DR99@1\|root,33ARP@2\|Bacteria

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1593	Ggra1593	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 710232..712037 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1	Ggra1593.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 710232..712037 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1.stop1	Ggra1593.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 710232..710234 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1.CDS1	Ggra1593.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 710232..711147 -
Ggra1593.t1.CDS2	Ggra1593.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 711265..712037 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1.exon1	Ggra1593.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 710232..711147 -
Ggra1593.t1.exon2	Ggra1593.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 711265..712037 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1.intron1	Ggra1593.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000844_pilon 711148..711264 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1593.t1.start1	Ggra1593.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 712035..712037 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:710232..712037-
coding sequence from alignment at tig00000844_pilon:710232..712037-

mRNA sequence

>Ggra1593.t1 ID=Ggra1593.t1|Name=Ggra1593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=563bp
MSTPLLVIAHALLVVYAASNPLTCADHPAYSSNLNPVLLSSWTILNGRST
TEAVYYPRYTTHRFAPDVDESSMVYNALDWFYVAHHKQPVSDSFIQLNLH
RDARIYLIVSVQYNNDRPPATLPGWNSEGWATRVDGLDNEFVFGVHQTQT
RYLPTRVYIFSRDAKGTAVLPSNDWVTRSVSGVNAIGGWYAMIAERDGQP
SKTPRRPTAVAKAILPNQRCPDELHDLWVTTEPDASDVDVRGRMWPTWHP
QWDPCYWCAYDHDHGSSALAAMNYAPRFGYTPWKNNREDESHEGFKCAVF
RASSYYVCFCIHAQTSKLRRVGVRNHTIILAVSDAKTKELLADITHKGFF
GFTGVRARDGGFVGLTKEEEEMQVELWENDRATNKRSVNVINMLALNPAY
GYNRKEIIRGTYEEWATNPICSGAGLRGILNMDIRNPITGIVSSTKADEV
VQLGRENEGILTRNDGSSRLLLINDVVFGDDYCTFASGNDGDRASDGTFY
TDTSGRMLMSGPGKSSVRQFLKSGFNMKMSGKYTVVDPWGGEFMPGQNGQ
SSNGYGLDPDVN*

spliced messenger RNA

>Ggra1593.t1 ID=Ggra1593.t1|Name=Ggra1593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1689bp|location=Sequence derived from alignment at tig00000844_pilon:710232..712037- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACCCCTCTTCTCGTAATCGCTCACGCCCTCTTGGTCGTCTACGC
AGCCTCTAATCCCTTGACCTGCGCCGATCATCCAGCATACTCATCCAACT
TGAATCCCGTGCTCCTATCATCATGGACAATTCTCAACGGCCGAAGCACA
ACGGAAGCCGTGTATTACCCGCGCTACACCACTCACCGATTCGCTCCAGA
TGTGGATGAGTCCTCCATGGTATACAATGCGCTAGACTGGTTCTATGTTG
CGCACCACAAACAACCTGTCTCGGACAGCTTCATTCAACTCAATCTCCAC
CGCGACGCGAGGATCTATTTGATTGTCTCGGTGCAATACAATAACGACAG
ACCCCCTGCAACCCTTCCTGGATGGAACAGTGAAGGTTGGGCAACTCGCG
TCGATGGTCTCGACAATGAGTTCGTCTTTGGCGTGCATCAAACGCAGACA
AGATACCTTCCAACGCGCGTGTACATCTTTTCACGAGACGCAAAAGGCAC
TGCAGTTCTTCCTTCGAATGACTGGGTCACACGCAGTGTTTCCGGTGTGA
ATGCTATTGGGGGGTGGTATGCTATGATTGCAGAACGCGATGGTCAACCG
TCTAAAACTCCCAGACGACCAACCGCTGTGGCGAAAGCTATTCTTCCCAA
CCAACGATGCCCTGACGAGCTTCATGACTTGTGGGTCACGACGGAGCCGG
ATGCCTCAGATGTGGATGTCAGAGGAAGGATGTGGCCTACATGGCATCCA
CAGTGGGACCCATGTTACTGGTGCGCTTATGACCATGATCACGGGTCTTC
TGCCCTTGCGGCAATGAACTACGCACCTAGGTTTGGATACACTCCATGGA
AGAATAACCGAGAAGACGAGTCGCACGAGGGCTTCAAGTGCGCGGTATTC
AGAGCAAGTTCGTACTACGTTTGCTTCTGTATCCATGCGCAGACATCGAA
ATTACGACGCGTTGGAGTTCGCAATCATACAATTATCCTTGCTGTTTCGG
ACGCTAAGACGAAAGAGCTGCTGGCAGACATAACACACAAGGGCTTCTTC
GGTTTCACAGGAGTGAGGGCAAGGGATGGAGGTTTCGTGGGCTTGACGAA
GGAAGAAGAAGAAATGCAAGTGGAGCTGTGGGAGAACGATCGGGCCACCA
ACAAGCGCTCAGTGAATGTGATCAACATGCTGGCTCTCAACCCCGCCTAT
GGATACAACCGAAAGGAAATAATACGTGGCACGTATGAAGAGTGGGCGAC
GAACCCCATCTGTTCTGGGGCAGGTCTCCGTGGAATACTGAACATGGACA
TAAGGAACCCCATCACCGGCATTGTTTCATCAACAAAGGCTGACGAAGTT
GTGCAGCTCGGCCGGGAGAACGAGGGCATACTGACAAGAAACGACGGATC
GTCTCGTCTGCTTCTCATTAACGATGTTGTTTTCGGCGACGATTATTGCA
CATTTGCTTCTGGTAATGATGGTGATCGGGCCTCTGATGGAACCTTCTAT
ACGGACACTAGTGGAAGGATGCTGATGAGCGGTCCTGGTAAGTCTAGCGT
GCGACAGTTTCTGAAAAGTGGATTCAATATGAAGATGAGTGGGAAGTACA
CTGTGGTGGACCCTTGGGGTGGCGAGTTTATGCCCGGCCAAAATGGTCAG
AGTAGTAATGGATACGGGCTAGATCCAGACGTGAACTGA

protein sequence of Ggra1593.t1

>Ggra1593.t1 ID=Ggra1593.t1|Name=Ggra1593.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=563bp
MSTPLLVIAHALLVVYAASNPLTCADHPAYSSNLNPVLLSSWTILNGRST
TEAVYYPRYTTHRFAPDVDESSMVYNALDWFYVAHHKQPVSDSFIQLNLH
RDARIYLIVSVQYNNDRPPATLPGWNSEGWATRVDGLDNEFVFGVHQTQT
RYLPTRVYIFSRDAKGTAVLPSNDWVTRSVSGVNAIGGWYAMIAERDGQP
SKTPRRPTAVAKAILPNQRCPDELHDLWVTTEPDASDVDVRGRMWPTWHP
QWDPCYWCAYDHDHGSSALAAMNYAPRFGYTPWKNNREDESHEGFKCAVF
RASSYYVCFCIHAQTSKLRRVGVRNHTIILAVSDAKTKELLADITHKGFF
GFTGVRARDGGFVGLTKEEEEMQVELWENDRATNKRSVNVINMLALNPAY
GYNRKEIIRGTYEEWATNPICSGAGLRGILNMDIRNPITGIVSSTKADEV
VQLGRENEGILTRNDGSSRLLLINDVVFGDDYCTFASGNDGDRASDGTFY
TDTSGRMLMSGPGKSSVRQFLKSGFNMKMSGKYTVVDPWGGEFMPGQNGQ
SSNGYGLDPDVN*

mRNA from alignment at tig00000844_pilon:710232..712037-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1593.t1 ID=Ggra1593.t1|Name=Ggra1593.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00000844_pilon:710232..712037- (Gracilaria gracilis GNS1m male)
ATGTCCACCCCTCTTCTCGTAATCGCTCACGCCCTCTTGGTCGTCTACGC
AGCCTCTAATCCCTTGACCTGCGCCGATCATCCAGCATACTCATCCAACT
TGAATCCCGTGCTCCTATCATCATGGACAATTCTCAACGGCCGAAGCACA
ACGGAAGCCGTGTATTACCCGCGCTACACCACTCACCGATTCGCTCCAGA
TGTGGATGAGTCCTCCATGGTATACAATGCGCTAGACTGGTTCTATGTTG
CGCACCACAAACAACCTGTCTCGGACAGCTTCATTCAACTCAATCTCCAC
CGCGACGCGAGGATCTATTTGATTGTCTCGGTGCAATACAATAACGACAG
ACCCCCTGCAACCCTTCCTGGATGGAACAGTGAAGGTTGGGCAACTCGCG
TCGATGGTCTCGACAATGAGTTCGTCTTTGGCGTGCATCAAACGCAGACA
AGATACCTTCCAACGCGCGTGTACATCTTTTCACGAGACGCAAAAGGCAC
TGCAGTTCTTCCTTCGAATGACTGGGTCACACGCAGTGTTTCCGGTGTGA
ATGCTATTGGGGGGTGGTATGCTATGATTGCAGAACGCGATGGTCAACCG
TCTAAAACTCCCAGACGACCAACCGCTGTGGCGAAAGCTATTCTTCCCAA
CCAACGATGCCCTGACGAGCTTCATGACTTGTGGGTCACGACGGAGCCGG
ATGCCTCAGATGTGGATGTCAGAGGAAGGATGTGGCCTACATGGCATCCA
CAGTGGGACCCATGTTACTGGTGGTATGTACAATACAATCAACGCTTCAG
AGACTAACCTTGATTCTCTACCACGTCCGTAAGACTCGTTGTTGTAACTA
ACCAGTTCTTTTGTTTTGTCTTGCGCTTCTTTTGAGGTAGCGCTTATGAC
CATGATCACGGGTCTTCTGCCCTTGCGGCAATGAACTACGCACCTAGGTT
TGGATACACTCCATGGAAGAATAACCGAGAAGACGAGTCGCACGAGGGCT
TCAAGTGCGCGGTATTCAGAGCAAGTTCGTACTACGTTTGCTTCTGTATC
CATGCGCAGACATCGAAATTACGACGCGTTGGAGTTCGCAATCATACAAT
TATCCTTGCTGTTTCGGACGCTAAGACGAAAGAGCTGCTGGCAGACATAA
CACACAAGGGCTTCTTCGGTTTCACAGGAGTGAGGGCAAGGGATGGAGGT
TTCGTGGGCTTGACGAAGGAAGAAGAAGAAATGCAAGTGGAGCTGTGGGA
GAACGATCGGGCCACCAACAAGCGCTCAGTGAATGTGATCAACATGCTGG
CTCTCAACCCCGCCTATGGATACAACCGAAAGGAAATAATACGTGGCACG
TATGAAGAGTGGGCGACGAACCCCATCTGTTCTGGGGCAGGTCTCCGTGG
AATACTGAACATGGACATAAGGAACCCCATCACCGGCATTGTTTCATCAA
CAAAGGCTGACGAAGTTGTGCAGCTCGGCCGGGAGAACGAGGGCATACTG
ACAAGAAACGACGGATCGTCTCGTCTGCTTCTCATTAACGATGTTGTTTT
CGGCGACGATTATTGCACATTTGCTTCTGGTAATGATGGTGATCGGGCCT
CTGATGGAACCTTCTATACGGACACTAGTGGAAGGATGCTGATGAGCGGT
CCTGGTAAGTCTAGCGTGCGACAGTTTCTGAAAAGTGGATTCAATATGAA
GATGAGTGGGAAGTACACTGTGGTGGACCCTTGGGGTGGCGAGTTTATGC
CCGGCCAAAATGGTCAGAGTAGTAATGGATACGGGCTAGATCCAGACGTG
AACTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:710232..712037-

>Ggra1593.t1 ID=Ggra1593.t1|Name=Ggra1593.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1689bp|location=Sequence derived from alignment at tig00000844_pilon:710232..712037- (Gracilaria gracilis GNS1m male)
ATGTCCACCCCTCTTCTCGTAATCGCTCACGCCCTCTTGGTCGTCTACGC
AGCCTCTAATCCCTTGACCTGCGCCGATCATCCAGCATACTCATCCAACT
TGAATCCCGTGCTCCTATCATCATGGACAATTCTCAACGGCCGAAGCACA
ACGGAAGCCGTGTATTACCCGCGCTACACCACTCACCGATTCGCTCCAGA
TGTGGATGAGTCCTCCATGGTATACAATGCGCTAGACTGGTTCTATGTTG
CGCACCACAAACAACCTGTCTCGGACAGCTTCATTCAACTCAATCTCCAC
CGCGACGCGAGGATCTATTTGATTGTCTCGGTGCAATACAATAACGACAG
ACCCCCTGCAACCCTTCCTGGATGGAACAGTGAAGGTTGGGCAACTCGCG
TCGATGGTCTCGACAATGAGTTCGTCTTTGGCGTGCATCAAACGCAGACA
AGATACCTTCCAACGCGCGTGTACATCTTTTCACGAGACGCAAAAGGCAC
TGCAGTTCTTCCTTCGAATGACTGGGTCACACGCAGTGTTTCCGGTGTGA
ATGCTATTGGGGGGTGGTATGCTATGATTGCAGAACGCGATGGTCAACCG
TCTAAAACTCCCAGACGACCAACCGCTGTGGCGAAAGCTATTCTTCCCAA
CCAACGATGCCCTGACGAGCTTCATGACTTGTGGGTCACGACGGAGCCGG
ATGCCTCAGATGTGGATGTCAGAGGAAGGATGTGGCCTACATGGCATCCA
CAGTGGGACCCATGTTACTGGTGCGCTTATGACCATGATCACGGGTCTTC
TGCCCTTGCGGCAATGAACTACGCACCTAGGTTTGGATACACTCCATGGA
AGAATAACCGAGAAGACGAGTCGCACGAGGGCTTCAAGTGCGCGGTATTC
AGAGCAAGTTCGTACTACGTTTGCTTCTGTATCCATGCGCAGACATCGAA
ATTACGACGCGTTGGAGTTCGCAATCATACAATTATCCTTGCTGTTTCGG
ACGCTAAGACGAAAGAGCTGCTGGCAGACATAACACACAAGGGCTTCTTC
GGTTTCACAGGAGTGAGGGCAAGGGATGGAGGTTTCGTGGGCTTGACGAA
GGAAGAAGAAGAAATGCAAGTGGAGCTGTGGGAGAACGATCGGGCCACCA
ACAAGCGCTCAGTGAATGTGATCAACATGCTGGCTCTCAACCCCGCCTAT
GGATACAACCGAAAGGAAATAATACGTGGCACGTATGAAGAGTGGGCGAC
GAACCCCATCTGTTCTGGGGCAGGTCTCCGTGGAATACTGAACATGGACA
TAAGGAACCCCATCACCGGCATTGTTTCATCAACAAAGGCTGACGAAGTT
GTGCAGCTCGGCCGGGAGAACGAGGGCATACTGACAAGAAACGACGGATC
GTCTCGTCTGCTTCTCATTAACGATGTTGTTTTCGGCGACGATTATTGCA
CATTTGCTTCTGGTAATGATGGTGATCGGGCCTCTGATGGAACCTTCTAT
ACGGACACTAGTGGAAGGATGCTGATGAGCGGTCCTGGTAAGTCTAGCGT
GCGACAGTTTCTGAAAAGTGGATTCAATATGAAGATGAGTGGGAAGTACA
CTGTGGTGGACCCTTGGGGTGGCGAGTTTATGCCCGGCCAAAATGGTCAG
AGTAGTAATGGATACGGGCTAGATCCAGACGTGAACTGA