Ggra1590.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1590.t1
Unique Name	Ggra1590.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:685483..687039 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1590	Ggra1590	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 685483..687384 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1590.t1.stop1	Ggra1590.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 685483..685485 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1590.t1.CDS1	Ggra1590.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 685483..687039 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1590.t1.exon1	Ggra1590.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 685483..687039 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1590.t1.start1	Ggra1590.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 687037..687039 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1590.t1	Ggra1590.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 685483..687039 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:685483..687039-
coding sequence from alignment at tig00000844_pilon:685483..687039-

mRNA sequence

>Ggra1590.t1 ID=Ggra1590.t1|Name=Ggra1590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MLRPRSDDAAQSEDPQSGTVEAEAASAKVVEPEQGKESIHVISSSDEEIV
EVHRTKNKGKKRKKNVLDLNVTSIDMTDYTQRAVTIDIKHIKTPEQSLLG
MSESHKAELIKNFRKRGLLGALGLMSVTVARETDMNNALNDEERVLVDCV
LVDGHHRLMALLHVLEHDNDPRWKTITKNVRVMLWRRTDGKHVTESEILR
LGALLNEGSEALLKMRFADKVHSTVSLIKILEREHGISASELESQEVAGC
LESSCLISGAEKKQYMRYADLALKLVNTPGMVEKFEDMCEHNSKIALTHF
SYPELYKLEAHEFWFAMECIRRLVVKDPKTQGWGRFEEVRSYFFARGLAM
YRAARTVGAEKKLILEQFFKQSFRISGDTGPLITVSEFVFGQVVNLKVLP
RRQLCEDAIQRNANMVRNRLRTFFGIEPPGGLKKKPRSKSAVSVVDLRGG
AGPSGVRRSRRVAAQSKSLDEEGGVSQKKRSGKKGGSVDPFEAILEEMEI
DNEIQSSQPPRKKRKFTL*

spliced messenger RNA

>Ggra1590.t1 ID=Ggra1590.t1|Name=Ggra1590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000844_pilon:685483..687039- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAGACCCCGTAGTGATGATGCCGCTCAGAGTGAGGACCCGCAATC
CGGAACTGTGGAGGCCGAGGCCGCATCTGCCAAAGTGGTGGAGCCTGAGC
AGGGGAAGGAGTCCATTCATGTGATCAGCAGTTCGGATGAGGAGATTGTG
GAGGTGCACAGAACGAAGAATAAGGGCAAGAAGCGTAAGAAGAACGTCTT
GGACCTCAATGTTACATCCATTGATATGACGGACTACACTCAGCGGGCTG
TAACTATCGATATCAAACACATAAAGACACCGGAGCAGAGCCTTCTTGGT
ATGAGTGAAAGCCACAAGGCGGAATTGATTAAGAACTTCAGAAAACGGGG
TCTGCTTGGTGCGCTTGGGTTGATGAGTGTGACAGTTGCGCGTGAGACCG
ACATGAACAATGCGTTGAATGATGAGGAAAGAGTACTCGTGGACTGCGTT
CTGGTGGATGGACACCACCGTCTGATGGCGTTATTACACGTTCTAGAGCA
CGACAATGACCCTCGCTGGAAGACTATAACAAAGAATGTGAGGGTTATGC
TGTGGAGAAGGACGGATGGGAAGCATGTCACGGAGAGCGAGATTTTGAGG
CTTGGCGCACTCCTCAATGAGGGGAGTGAGGCTCTGTTGAAGATGAGGTT
TGCTGACAAAGTGCACTCTACGGTGAGTCTAATTAAGATCCTTGAACGTG
AGCATGGAATATCTGCGTCAGAACTGGAGTCTCAGGAGGTCGCGGGTTGT
CTGGAAAGCAGTTGTCTGATATCGGGGGCAGAGAAAAAGCAGTATATGCG
TTATGCTGACCTTGCTTTAAAGCTGGTGAATACCCCTGGTATGGTGGAGA
AATTTGAGGACATGTGTGAACACAATTCGAAGATAGCACTTACTCACTTC
TCATACCCGGAGTTATACAAATTGGAAGCGCACGAGTTCTGGTTTGCTAT
GGAGTGTATACGTCGGCTTGTGGTGAAGGATCCCAAGACGCAAGGTTGGG
GTAGATTCGAAGAAGTCCGTTCCTACTTCTTTGCACGGGGACTGGCAATG
TATCGGGCAGCCCGGACGGTTGGTGCTGAGAAGAAGCTTATCCTTGAGCA
GTTCTTCAAGCAGTCTTTCAGAATCTCTGGTGATACGGGTCCTTTGATTA
CGGTTTCGGAGTTTGTATTTGGGCAGGTTGTGAATCTGAAGGTTCTTCCT
CGTCGCCAGCTTTGTGAGGATGCCATCCAGCGAAATGCCAATATGGTACG
AAATAGGCTTCGCACATTCTTCGGGATTGAACCTCCGGGAGGGTTGAAAA
AGAAGCCGAGATCTAAAAGTGCTGTTTCCGTGGTTGATTTGCGGGGGGGA
GCTGGACCGTCGGGTGTGCGAAGGAGTCGAAGGGTGGCAGCTCAGTCGAA
GAGCCTCGATGAGGAGGGAGGTGTGTCACAGAAGAAGAGGTCCGGAAAGA
AAGGAGGTTCCGTTGATCCATTTGAAGCGATACTGGAAGAGATGGAGATT
GACAACGAGATACAGTCATCCCAGCCCCCGCGTAAGAAGCGCAAATTCAC
TCTCTAG

protein sequence of Ggra1590.t1

>Ggra1590.t1 ID=Ggra1590.t1|Name=Ggra1590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MLRPRSDDAAQSEDPQSGTVEAEAASAKVVEPEQGKESIHVISSSDEEIV
EVHRTKNKGKKRKKNVLDLNVTSIDMTDYTQRAVTIDIKHIKTPEQSLLG
MSESHKAELIKNFRKRGLLGALGLMSVTVARETDMNNALNDEERVLVDCV
LVDGHHRLMALLHVLEHDNDPRWKTITKNVRVMLWRRTDGKHVTESEILR
LGALLNEGSEALLKMRFADKVHSTVSLIKILEREHGISASELESQEVAGC
LESSCLISGAEKKQYMRYADLALKLVNTPGMVEKFEDMCEHNSKIALTHF
SYPELYKLEAHEFWFAMECIRRLVVKDPKTQGWGRFEEVRSYFFARGLAM
YRAARTVGAEKKLILEQFFKQSFRISGDTGPLITVSEFVFGQVVNLKVLP
RRQLCEDAIQRNANMVRNRLRTFFGIEPPGGLKKKPRSKSAVSVVDLRGG
AGPSGVRRSRRVAAQSKSLDEEGGVSQKKRSGKKGGSVDPFEAILEEMEI
DNEIQSSQPPRKKRKFTL*

mRNA from alignment at tig00000844_pilon:685483..687039-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1590.t1 ID=Ggra1590.t1|Name=Ggra1590.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000844_pilon:685483..687039- (Gracilaria gracilis GNS1m male)
ATGCTGAGACCCCGTAGTGATGATGCCGCTCAGAGTGAGGACCCGCAATC
CGGAACTGTGGAGGCCGAGGCCGCATCTGCCAAAGTGGTGGAGCCTGAGC
AGGGGAAGGAGTCCATTCATGTGATCAGCAGTTCGGATGAGGAGATTGTG
GAGGTGCACAGAACGAAGAATAAGGGCAAGAAGCGTAAGAAGAACGTCTT
GGACCTCAATGTTACATCCATTGATATGACGGACTACACTCAGCGGGCTG
TAACTATCGATATCAAACACATAAAGACACCGGAGCAGAGCCTTCTTGGT
ATGAGTGAAAGCCACAAGGCGGAATTGATTAAGAACTTCAGAAAACGGGG
TCTGCTTGGTGCGCTTGGGTTGATGAGTGTGACAGTTGCGCGTGAGACCG
ACATGAACAATGCGTTGAATGATGAGGAAAGAGTACTCGTGGACTGCGTT
CTGGTGGATGGACACCACCGTCTGATGGCGTTATTACACGTTCTAGAGCA
CGACAATGACCCTCGCTGGAAGACTATAACAAAGAATGTGAGGGTTATGC
TGTGGAGAAGGACGGATGGGAAGCATGTCACGGAGAGCGAGATTTTGAGG
CTTGGCGCACTCCTCAATGAGGGGAGTGAGGCTCTGTTGAAGATGAGGTT
TGCTGACAAAGTGCACTCTACGGTGAGTCTAATTAAGATCCTTGAACGTG
AGCATGGAATATCTGCGTCAGAACTGGAGTCTCAGGAGGTCGCGGGTTGT
CTGGAAAGCAGTTGTCTGATATCGGGGGCAGAGAAAAAGCAGTATATGCG
TTATGCTGACCTTGCTTTAAAGCTGGTGAATACCCCTGGTATGGTGGAGA
AATTTGAGGACATGTGTGAACACAATTCGAAGATAGCACTTACTCACTTC
TCATACCCGGAGTTATACAAATTGGAAGCGCACGAGTTCTGGTTTGCTAT
GGAGTGTATACGTCGGCTTGTGGTGAAGGATCCCAAGACGCAAGGTTGGG
GTAGATTCGAAGAAGTCCGTTCCTACTTCTTTGCACGGGGACTGGCAATG
TATCGGGCAGCCCGGACGGTTGGTGCTGAGAAGAAGCTTATCCTTGAGCA
GTTCTTCAAGCAGTCTTTCAGAATCTCTGGTGATACGGGTCCTTTGATTA
CGGTTTCGGAGTTTGTATTTGGGCAGGTTGTGAATCTGAAGGTTCTTCCT
CGTCGCCAGCTTTGTGAGGATGCCATCCAGCGAAATGCCAATATGGTACG
AAATAGGCTTCGCACATTCTTCGGGATTGAACCTCCGGGAGGGTTGAAAA
AGAAGCCGAGATCTAAAAGTGCTGTTTCCGTGGTTGATTTGCGGGGGGGA
GCTGGACCGTCGGGTGTGCGAAGGAGTCGAAGGGTGGCAGCTCAGTCGAA
GAGCCTCGATGAGGAGGGAGGTGTGTCACAGAAGAAGAGGTCCGGAAAGA
AAGGAGGTTCCGTTGATCCATTTGAAGCGATACTGGAAGAGATGGAGATT
GACAACGAGATACAGTCATCCCAGCCCCCGCGTAAGAAGCGCAAATTCAC
TCTCTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:685483..687039-

>Ggra1590.t1 ID=Ggra1590.t1|Name=Ggra1590.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000844_pilon:685483..687039- (Gracilaria gracilis GNS1m male)
ATGCTGAGACCCCGTAGTGATGATGCCGCTCAGAGTGAGGACCCGCAATC
CGGAACTGTGGAGGCCGAGGCCGCATCTGCCAAAGTGGTGGAGCCTGAGC
AGGGGAAGGAGTCCATTCATGTGATCAGCAGTTCGGATGAGGAGATTGTG
GAGGTGCACAGAACGAAGAATAAGGGCAAGAAGCGTAAGAAGAACGTCTT
GGACCTCAATGTTACATCCATTGATATGACGGACTACACTCAGCGGGCTG
TAACTATCGATATCAAACACATAAAGACACCGGAGCAGAGCCTTCTTGGT
ATGAGTGAAAGCCACAAGGCGGAATTGATTAAGAACTTCAGAAAACGGGG
TCTGCTTGGTGCGCTTGGGTTGATGAGTGTGACAGTTGCGCGTGAGACCG
ACATGAACAATGCGTTGAATGATGAGGAAAGAGTACTCGTGGACTGCGTT
CTGGTGGATGGACACCACCGTCTGATGGCGTTATTACACGTTCTAGAGCA
CGACAATGACCCTCGCTGGAAGACTATAACAAAGAATGTGAGGGTTATGC
TGTGGAGAAGGACGGATGGGAAGCATGTCACGGAGAGCGAGATTTTGAGG
CTTGGCGCACTCCTCAATGAGGGGAGTGAGGCTCTGTTGAAGATGAGGTT
TGCTGACAAAGTGCACTCTACGGTGAGTCTAATTAAGATCCTTGAACGTG
AGCATGGAATATCTGCGTCAGAACTGGAGTCTCAGGAGGTCGCGGGTTGT
CTGGAAAGCAGTTGTCTGATATCGGGGGCAGAGAAAAAGCAGTATATGCG
TTATGCTGACCTTGCTTTAAAGCTGGTGAATACCCCTGGTATGGTGGAGA
AATTTGAGGACATGTGTGAACACAATTCGAAGATAGCACTTACTCACTTC
TCATACCCGGAGTTATACAAATTGGAAGCGCACGAGTTCTGGTTTGCTAT
GGAGTGTATACGTCGGCTTGTGGTGAAGGATCCCAAGACGCAAGGTTGGG
GTAGATTCGAAGAAGTCCGTTCCTACTTCTTTGCACGGGGACTGGCAATG
TATCGGGCAGCCCGGACGGTTGGTGCTGAGAAGAAGCTTATCCTTGAGCA
GTTCTTCAAGCAGTCTTTCAGAATCTCTGGTGATACGGGTCCTTTGATTA
CGGTTTCGGAGTTTGTATTTGGGCAGGTTGTGAATCTGAAGGTTCTTCCT
CGTCGCCAGCTTTGTGAGGATGCCATCCAGCGAAATGCCAATATGGTACG
AAATAGGCTTCGCACATTCTTCGGGATTGAACCTCCGGGAGGGTTGAAAA
AGAAGCCGAGATCTAAAAGTGCTGTTTCCGTGGTTGATTTGCGGGGGGGA
GCTGGACCGTCGGGTGTGCGAAGGAGTCGAAGGGTGGCAGCTCAGTCGAA
GAGCCTCGATGAGGAGGGAGGTGTGTCACAGAAGAAGAGGTCCGGAAAGA
AAGGAGGTTCCGTTGATCCATTTGAAGCGATACTGGAAGAGATGGAGATT
GACAACGAGATACAGTCATCCCAGCCCCCGCGTAAGAAGCGCAAATTCAC
TCTCTAG