Ggra1586.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1586.t1
Unique NameGgra1586.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length465
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:655409..656803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1586Ggra1586Gracilaria gracilis GNS1m malegenetig00000844_pilon 655409..656803 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1586.t1.stop1Ggra1586.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 655409..655411 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1586.t1.CDS1Ggra1586.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 655409..656803 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1586.t1.exon1Ggra1586.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 655409..656803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1586.t1.start1Ggra1586.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 656801..656803 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1586.t1Ggra1586.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 655409..656803 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1586.t1 ID=Ggra1586.t1|Name=Ggra1586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=465bp
MNATFAFTMYHLSAAGPAVCNKAQRWRRCLDKPAHMPNAADEATLLRSHT
SQLRNQLEVASWKAAVLELEKSDAFNQMALERQDKEAAQVEANHLSRRLK
QCEDERDEAQRQVSILEEKNNKSSIENESLLLQVERVQSALQHSHTKATE
LEKRGMELETHRTALAEEHELMKRERDGIKAHLEHKQVEYCFIINQLYGA
KKHHAEQLRESSHLKESLQRLDIDLNMSEAQNEALRATVAEMTDHVQAAV
NSVKHLNTLLGTKDEKLSLFERREEQWQQILEDVKENSQQWERYRHEMEQ
HVHLVEGQKSMISLKLEQVKKKLSDDRRFQDEFLGRNPILAMDILHCLKK
ENLAMKKTDENEPCTFETKSGVGSMNTIGDNLEHCSNYVSISGVPQNEGD
ENNGVKRRKKKRRRVECWRFGESGHDLCDCQSFADSETSEQSEDEGVNHI
NAEWTTGRKRAFHR*
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spliced messenger RNA

>Ggra1586.t1 ID=Ggra1586.t1|Name=Ggra1586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000844_pilon:655409..656803- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGCAACATTCGCATTTACCATGTACCACTTAAGCGCTGCTGGTCC
CGCTGTGTGCAACAAAGCCCAGCGCTGGCGAAGATGTTTGGACAAGCCCG
CCCATATGCCGAATGCAGCAGACGAAGCTACACTGTTGCGCTCCCACACC
TCTCAACTTAGGAACCAACTCGAGGTCGCTTCTTGGAAGGCAGCCGTATT
GGAACTGGAAAAATCCGATGCCTTCAATCAGATGGCTCTCGAGCGCCAGG
ACAAGGAGGCGGCACAAGTTGAAGCGAACCACCTCTCCCGTCGTCTCAAA
CAATGCGAGGACGAAAGGGATGAAGCGCAACGACAAGTCTCAATTTTGGA
AGAAAAAAACAACAAATCTTCCATTGAGAACGAATCACTACTTCTCCAGG
TCGAACGCGTCCAGAGTGCGCTTCAGCATTCTCACACCAAGGCCACAGAA
CTGGAGAAGAGGGGGATGGAGCTCGAAACCCATCGAACGGCTCTTGCTGA
AGAGCATGAACTAATGAAGAGGGAAAGGGACGGCATCAAGGCGCACCTGG
AGCATAAACAAGTTGAATACTGTTTTATCATCAACCAGTTATATGGTGCA
AAGAAACATCACGCAGAGCAGCTCCGCGAGTCTTCGCATTTGAAGGAATC
GCTTCAACGCCTCGATATCGACTTGAATATGTCCGAGGCCCAAAATGAAG
CATTGAGAGCCACGGTAGCAGAAATGACCGATCATGTTCAAGCAGCGGTA
AACTCTGTGAAGCATCTTAACACCCTTCTTGGCACGAAAGACGAGAAGCT
GTCTTTGTTCGAAAGGCGTGAAGAGCAGTGGCAACAAATACTGGAAGACG
TGAAAGAAAATTCCCAACAGTGGGAAAGATATCGTCATGAAATGGAACAG
CATGTCCATCTTGTTGAAGGGCAGAAGAGCATGATTTCTTTGAAACTAGA
ACAAGTGAAGAAGAAACTATCAGATGATCGCAGGTTTCAGGATGAGTTCT
TGGGAAGGAATCCAATTCTTGCCATGGATATCTTACACTGTTTGAAAAAA
GAGAACCTGGCGATGAAGAAAACCGATGAGAATGAGCCATGCACCTTTGA
GACGAAGTCAGGTGTGGGTTCTATGAATACGATTGGTGACAATTTGGAAC
ACTGCTCAAACTATGTCAGTATATCTGGTGTACCACAGAATGAAGGTGAT
GAAAACAATGGTGTGAAGAGGAGGAAGAAAAAACGCCGCCGTGTGGAATG
CTGGCGTTTTGGGGAAAGCGGCCATGATCTATGCGACTGTCAATCCTTTG
CAGATTCAGAGACGTCTGAACAGAGTGAAGACGAAGGCGTCAACCATATC
AACGCCGAATGGACGACTGGGCGAAAGCGTGCATTCCATCGCTAG
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protein sequence of Ggra1586.t1

>Ggra1586.t1 ID=Ggra1586.t1|Name=Ggra1586.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=465bp
MNATFAFTMYHLSAAGPAVCNKAQRWRRCLDKPAHMPNAADEATLLRSHT
SQLRNQLEVASWKAAVLELEKSDAFNQMALERQDKEAAQVEANHLSRRLK
QCEDERDEAQRQVSILEEKNNKSSIENESLLLQVERVQSALQHSHTKATE
LEKRGMELETHRTALAEEHELMKRERDGIKAHLEHKQVEYCFIINQLYGA
KKHHAEQLRESSHLKESLQRLDIDLNMSEAQNEALRATVAEMTDHVQAAV
NSVKHLNTLLGTKDEKLSLFERREEQWQQILEDVKENSQQWERYRHEMEQ
HVHLVEGQKSMISLKLEQVKKKLSDDRRFQDEFLGRNPILAMDILHCLKK
ENLAMKKTDENEPCTFETKSGVGSMNTIGDNLEHCSNYVSISGVPQNEGD
ENNGVKRRKKKRRRVECWRFGESGHDLCDCQSFADSETSEQSEDEGVNHI
NAEWTTGRKRAFHR*
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mRNA from alignment at tig00000844_pilon:655409..656803-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1586.t1 ID=Ggra1586.t1|Name=Ggra1586.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1395bp|location=Sequence derived from alignment at tig00000844_pilon:655409..656803- (Gracilaria gracilis GNS1m male)
ATGAACGCAACATTCGCATTTACCATGTACCACTTAAGCGCTGCTGGTCC
CGCTGTGTGCAACAAAGCCCAGCGCTGGCGAAGATGTTTGGACAAGCCCG
CCCATATGCCGAATGCAGCAGACGAAGCTACACTGTTGCGCTCCCACACC
TCTCAACTTAGGAACCAACTCGAGGTCGCTTCTTGGAAGGCAGCCGTATT
GGAACTGGAAAAATCCGATGCCTTCAATCAGATGGCTCTCGAGCGCCAGG
ACAAGGAGGCGGCACAAGTTGAAGCGAACCACCTCTCCCGTCGTCTCAAA
CAATGCGAGGACGAAAGGGATGAAGCGCAACGACAAGTCTCAATTTTGGA
AGAAAAAAACAACAAATCTTCCATTGAGAACGAATCACTACTTCTCCAGG
TCGAACGCGTCCAGAGTGCGCTTCAGCATTCTCACACCAAGGCCACAGAA
CTGGAGAAGAGGGGGATGGAGCTCGAAACCCATCGAACGGCTCTTGCTGA
AGAGCATGAACTAATGAAGAGGGAAAGGGACGGCATCAAGGCGCACCTGG
AGCATAAACAAGTTGAATACTGTTTTATCATCAACCAGTTATATGGTGCA
AAGAAACATCACGCAGAGCAGCTCCGCGAGTCTTCGCATTTGAAGGAATC
GCTTCAACGCCTCGATATCGACTTGAATATGTCCGAGGCCCAAAATGAAG
CATTGAGAGCCACGGTAGCAGAAATGACCGATCATGTTCAAGCAGCGGTA
AACTCTGTGAAGCATCTTAACACCCTTCTTGGCACGAAAGACGAGAAGCT
GTCTTTGTTCGAAAGGCGTGAAGAGCAGTGGCAACAAATACTGGAAGACG
TGAAAGAAAATTCCCAACAGTGGGAAAGATATCGTCATGAAATGGAACAG
CATGTCCATCTTGTTGAAGGGCAGAAGAGCATGATTTCTTTGAAACTAGA
ACAAGTGAAGAAGAAACTATCAGATGATCGCAGGTTTCAGGATGAGTTCT
TGGGAAGGAATCCAATTCTTGCCATGGATATCTTACACTGTTTGAAAAAA
GAGAACCTGGCGATGAAGAAAACCGATGAGAATGAGCCATGCACCTTTGA
GACGAAGTCAGGTGTGGGTTCTATGAATACGATTGGTGACAATTTGGAAC
ACTGCTCAAACTATGTCAGTATATCTGGTGTACCACAGAATGAAGGTGAT
GAAAACAATGGTGTGAAGAGGAGGAAGAAAAAACGCCGCCGTGTGGAATG
CTGGCGTTTTGGGGAAAGCGGCCATGATCTATGCGACTGTCAATCCTTTG
CAGATTCAGAGACGTCTGAACAGAGTGAAGACGAAGGCGTCAACCATATC
AACGCCGAATGGACGACTGGGCGAAAGCGTGCATTCCATCGCTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:655409..656803-

>Ggra1586.t1 ID=Ggra1586.t1|Name=Ggra1586.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1395bp|location=Sequence derived from alignment at tig00000844_pilon:655409..656803- (Gracilaria gracilis GNS1m male)
ATGAACGCAACATTCGCATTTACCATGTACCACTTAAGCGCTGCTGGTCC
CGCTGTGTGCAACAAAGCCCAGCGCTGGCGAAGATGTTTGGACAAGCCCG
CCCATATGCCGAATGCAGCAGACGAAGCTACACTGTTGCGCTCCCACACC
TCTCAACTTAGGAACCAACTCGAGGTCGCTTCTTGGAAGGCAGCCGTATT
GGAACTGGAAAAATCCGATGCCTTCAATCAGATGGCTCTCGAGCGCCAGG
ACAAGGAGGCGGCACAAGTTGAAGCGAACCACCTCTCCCGTCGTCTCAAA
CAATGCGAGGACGAAAGGGATGAAGCGCAACGACAAGTCTCAATTTTGGA
AGAAAAAAACAACAAATCTTCCATTGAGAACGAATCACTACTTCTCCAGG
TCGAACGCGTCCAGAGTGCGCTTCAGCATTCTCACACCAAGGCCACAGAA
CTGGAGAAGAGGGGGATGGAGCTCGAAACCCATCGAACGGCTCTTGCTGA
AGAGCATGAACTAATGAAGAGGGAAAGGGACGGCATCAAGGCGCACCTGG
AGCATAAACAAGTTGAATACTGTTTTATCATCAACCAGTTATATGGTGCA
AAGAAACATCACGCAGAGCAGCTCCGCGAGTCTTCGCATTTGAAGGAATC
GCTTCAACGCCTCGATATCGACTTGAATATGTCCGAGGCCCAAAATGAAG
CATTGAGAGCCACGGTAGCAGAAATGACCGATCATGTTCAAGCAGCGGTA
AACTCTGTGAAGCATCTTAACACCCTTCTTGGCACGAAAGACGAGAAGCT
GTCTTTGTTCGAAAGGCGTGAAGAGCAGTGGCAACAAATACTGGAAGACG
TGAAAGAAAATTCCCAACAGTGGGAAAGATATCGTCATGAAATGGAACAG
CATGTCCATCTTGTTGAAGGGCAGAAGAGCATGATTTCTTTGAAACTAGA
ACAAGTGAAGAAGAAACTATCAGATGATCGCAGGTTTCAGGATGAGTTCT
TGGGAAGGAATCCAATTCTTGCCATGGATATCTTACACTGTTTGAAAAAA
GAGAACCTGGCGATGAAGAAAACCGATGAGAATGAGCCATGCACCTTTGA
GACGAAGTCAGGTGTGGGTTCTATGAATACGATTGGTGACAATTTGGAAC
ACTGCTCAAACTATGTCAGTATATCTGGTGTACCACAGAATGAAGGTGAT
GAAAACAATGGTGTGAAGAGGAGGAAGAAAAAACGCCGCCGTGTGGAATG
CTGGCGTTTTGGGGAAAGCGGCCATGATCTATGCGACTGTCAATCCTTTG
CAGATTCAGAGACGTCTGAACAGAGTGAAGACGAAGGCGTCAACCATATC
AACGCCGAATGGACGACTGGGCGAAAGCGTGCATTCCATCGCTAG
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