Ggra1585.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1585.t1
Unique NameGgra1585.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:647760..648773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1585Ggra1585Gracilaria gracilis GNS1m malegenetig00000844_pilon 647760..648773 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1585.t1.start1Ggra1585.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 647760..647762 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1585.t1.CDS1Ggra1585.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 647760..648773 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1585.t1.exon1Ggra1585.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 647760..648773 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1585.t1.stop1Ggra1585.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 648771..648773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1585.t1Ggra1585.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 647760..648773 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1585.t1 ID=Ggra1585.t1|Name=Ggra1585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MMRLTLRMVPTNAGIFEEDTFSLLDVGKPHVSVAKGILTRFHIQIANCLV
KKPYGQIDMDGSTKNVKKPETFTSEGFNEMKNTCDKSQRNETRLVEVFEK
RADLSCEDPTNIEHATEDKCLYVETLPERHPPAGSSSTKHIFLQPPFQNQ
RSRLELDSVEQPFDGNSELCKRIRNDDINCAERCTYLKRNTDALGSCQGI
TVPSFVGPSESNEVPCTMERSVEPHYRNGIVSYECSAPSGTAIDSSNHQL
INEATESCIVSNSVVQGAHRLENGKAQLELQSVVNYNMESPRVDSSYIEL
SIEVNESQNGQDPQNNNCRNNACSAARMVTCNGIAGA*
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spliced messenger RNA

>Ggra1585.t1 ID=Ggra1585.t1|Name=Ggra1585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000844_pilon:647760..648773+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGATTGACTCTGAGAATGGTACCCACCAACGCTGGTATCTTTGA
AGAAGACACGTTTTCGTTGCTTGATGTGGGTAAACCACACGTCTCAGTTG
CGAAAGGAATTTTGACGCGTTTCCACATCCAAATCGCGAACTGCCTTGTT
AAGAAGCCATACGGACAAATTGATATGGATGGATCTACGAAAAATGTCAA
GAAGCCCGAAACATTCACCTCTGAGGGTTTCAATGAAATGAAGAACACTT
GTGATAAATCTCAGCGAAATGAAACCCGCCTGGTTGAAGTGTTCGAAAAG
CGAGCAGACTTGTCATGTGAAGACCCCACTAATATCGAGCATGCAACAGA
GGATAAGTGTTTATACGTTGAAACACTGCCTGAAAGACATCCTCCTGCCG
GCAGCTCTTCAACGAAACACATTTTCTTGCAGCCGCCATTCCAAAATCAA
AGGTCACGACTGGAACTTGATTCGGTCGAACAGCCCTTCGACGGCAATTC
TGAGCTTTGCAAACGCATACGCAATGATGATATCAATTGCGCTGAACGCT
GCACGTACTTGAAGAGAAATACAGATGCTCTTGGGTCATGCCAAGGCATT
ACAGTTCCTTCTTTCGTTGGACCGTCGGAGAGCAATGAGGTTCCCTGCAC
TATGGAGCGTTCCGTGGAACCACATTATAGGAATGGAATTGTTTCCTACG
AGTGTTCTGCACCCAGTGGTACCGCCATTGATAGCTCCAATCATCAACTA
ATCAATGAAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCAGGG
AGCACACAGGTTGGAAAACGGGAAAGCGCAATTGGAGCTACAATCTGTTG
TGAACTACAACATGGAGAGCCCCAGGGTTGATAGCTCTTACATTGAACTC
TCCATCGAAGTAAACGAGTCACAGAACGGTCAGGATCCCCAGAACAATAA
CTGCCGCAACAATGCTTGTTCTGCGGCAAGAATGGTCACATGCAACGGAA
TTGCTGGTGCTTAA
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protein sequence of Ggra1585.t1

>Ggra1585.t1 ID=Ggra1585.t1|Name=Ggra1585.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MMRLTLRMVPTNAGIFEEDTFSLLDVGKPHVSVAKGILTRFHIQIANCLV
KKPYGQIDMDGSTKNVKKPETFTSEGFNEMKNTCDKSQRNETRLVEVFEK
RADLSCEDPTNIEHATEDKCLYVETLPERHPPAGSSSTKHIFLQPPFQNQ
RSRLELDSVEQPFDGNSELCKRIRNDDINCAERCTYLKRNTDALGSCQGI
TVPSFVGPSESNEVPCTMERSVEPHYRNGIVSYECSAPSGTAIDSSNHQL
INEATESCIVSNSVVQGAHRLENGKAQLELQSVVNYNMESPRVDSSYIEL
SIEVNESQNGQDPQNNNCRNNACSAARMVTCNGIAGA*
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mRNA from alignment at tig00000844_pilon:647760..648773+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1585.t1 ID=Ggra1585.t1|Name=Ggra1585.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000844_pilon:647760..648773+ (Gracilaria gracilis GNS1m male)
ATGATGCGATTGACTCTGAGAATGGTACCCACCAACGCTGGTATCTTTGA
AGAAGACACGTTTTCGTTGCTTGATGTGGGTAAACCACACGTCTCAGTTG
CGAAAGGAATTTTGACGCGTTTCCACATCCAAATCGCGAACTGCCTTGTT
AAGAAGCCATACGGACAAATTGATATGGATGGATCTACGAAAAATGTCAA
GAAGCCCGAAACATTCACCTCTGAGGGTTTCAATGAAATGAAGAACACTT
GTGATAAATCTCAGCGAAATGAAACCCGCCTGGTTGAAGTGTTCGAAAAG
CGAGCAGACTTGTCATGTGAAGACCCCACTAATATCGAGCATGCAACAGA
GGATAAGTGTTTATACGTTGAAACACTGCCTGAAAGACATCCTCCTGCCG
GCAGCTCTTCAACGAAACACATTTTCTTGCAGCCGCCATTCCAAAATCAA
AGGTCACGACTGGAACTTGATTCGGTCGAACAGCCCTTCGACGGCAATTC
TGAGCTTTGCAAACGCATACGCAATGATGATATCAATTGCGCTGAACGCT
GCACGTACTTGAAGAGAAATACAGATGCTCTTGGGTCATGCCAAGGCATT
ACAGTTCCTTCTTTCGTTGGACCGTCGGAGAGCAATGAGGTTCCCTGCAC
TATGGAGCGTTCCGTGGAACCACATTATAGGAATGGAATTGTTTCCTACG
AGTGTTCTGCACCCAGTGGTACCGCCATTGATAGCTCCAATCATCAACTA
ATCAATGAAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCAGGG
AGCACACAGGTTGGAAAACGGGAAAGCGCAATTGGAGCTACAATCTGTTG
TGAACTACAACATGGAGAGCCCCAGGGTTGATAGCTCTTACATTGAACTC
TCCATCGAAGTAAACGAGTCACAGAACGGTCAGGATCCCCAGAACAATAA
CTGCCGCAACAATGCTTGTTCTGCGGCAAGAATGGTCACATGCAACGGAA
TTGCTGGTGCTTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:647760..648773+

>Ggra1585.t1 ID=Ggra1585.t1|Name=Ggra1585.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000844_pilon:647760..648773+ (Gracilaria gracilis GNS1m male)
ATGATGCGATTGACTCTGAGAATGGTACCCACCAACGCTGGTATCTTTGA
AGAAGACACGTTTTCGTTGCTTGATGTGGGTAAACCACACGTCTCAGTTG
CGAAAGGAATTTTGACGCGTTTCCACATCCAAATCGCGAACTGCCTTGTT
AAGAAGCCATACGGACAAATTGATATGGATGGATCTACGAAAAATGTCAA
GAAGCCCGAAACATTCACCTCTGAGGGTTTCAATGAAATGAAGAACACTT
GTGATAAATCTCAGCGAAATGAAACCCGCCTGGTTGAAGTGTTCGAAAAG
CGAGCAGACTTGTCATGTGAAGACCCCACTAATATCGAGCATGCAACAGA
GGATAAGTGTTTATACGTTGAAACACTGCCTGAAAGACATCCTCCTGCCG
GCAGCTCTTCAACGAAACACATTTTCTTGCAGCCGCCATTCCAAAATCAA
AGGTCACGACTGGAACTTGATTCGGTCGAACAGCCCTTCGACGGCAATTC
TGAGCTTTGCAAACGCATACGCAATGATGATATCAATTGCGCTGAACGCT
GCACGTACTTGAAGAGAAATACAGATGCTCTTGGGTCATGCCAAGGCATT
ACAGTTCCTTCTTTCGTTGGACCGTCGGAGAGCAATGAGGTTCCCTGCAC
TATGGAGCGTTCCGTGGAACCACATTATAGGAATGGAATTGTTTCCTACG
AGTGTTCTGCACCCAGTGGTACCGCCATTGATAGCTCCAATCATCAACTA
ATCAATGAAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCAGGG
AGCACACAGGTTGGAAAACGGGAAAGCGCAATTGGAGCTACAATCTGTTG
TGAACTACAACATGGAGAGCCCCAGGGTTGATAGCTCTTACATTGAACTC
TCCATCGAAGTAAACGAGTCACAGAACGGTCAGGATCCCCAGAACAATAA
CTGCCGCAACAATGCTTGTTCTGCGGCAAGAATGGTCACATGCAACGGAA
TTGCTGGTGCTTAA
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