Ggra1581.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1581.t1
Unique NameGgra1581.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length506
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:607912..609525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1581Ggra1581Gracilaria gracilis GNS1m malegenetig00000844_pilon 607912..609525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1Ggra1581.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 607912..609525 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1.start1Ggra1581.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 607912..607914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1.CDS1Ggra1581.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 607912..608488 +
Ggra1581.t1.CDS2Ggra1581.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 608585..609525 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1.exon1Ggra1581.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 607912..608488 +
Ggra1581.t1.exon2Ggra1581.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 608585..609525 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1.intron1Ggra1581.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 608489..608584 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1581.t1.stop1Ggra1581.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 609523..609525 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1581.t1 ID=Ggra1581.t1|Name=Ggra1581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=506bp
MELRNTPERVAAKARRLSCSLSNPFPNYNQRNNHHVENLFEATTPSANKL
CDAPQSAPPPGNVITVDIEKDIGPISAGRNAVVNASTRRDSLASTECPEP
DFQPRTPDALFTFIVKTLKKEKLQSLCEKLGPVKRRTKLEGAYRIMIHAA
LCIMQEKEVPHCFNDAELNTNFTRFLKENMTWEMCPDAKSLITGEKSPSN
VPGSSDHIDSVTRVHDFSVNEFARLCILLRNDDQCRSAMKNASCLELSRK
QLDTGVTRDTFWVTIGTRFNDPTVVTTEDFRGVIDGIESNACPLAHRTAA
LLKSHYRYWRRYFTEYFNKWQQSGQNDPERFIDFLPKHGNVLYNSSKRSY
ILFHVCRCGTANSDTALLNIVSRFAKKGSGYEAGVVGDGKSDGEIERQKK
KRRSADSTNFKNLENCLAQVPKSSLHISEALTRNNEAVLADEGDSRVHQK
LELLRAELRNRRLDRNYEENDAALNAESFLKEMSVKHINNLIDSLKEDLG
ESERC*
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spliced messenger RNA

>Ggra1581.t1 ID=Ggra1581.t1|Name=Ggra1581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1518bp|location=Sequence derived from alignment at tig00000844_pilon:607912..609525+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTTCCCAATTACAACCAGCGAAACAACC
ACCACGTAGAAAATCTTTTTGAAGCGACGACTCCGTCTGCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGGTAACGTCATCACAGTAGA
CATTGAGAAGGATATTGGCCCGATTTCAGCAGGTCGAAATGCAGTTGTTA
ATGCTTCGACGAGACGAGATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTTTCAGCCACGCACTCCGGACGCCCTTTTCACGTTCATCGTGAAAAC
GCTAAAGAAAGAAAAGCTTCAGAGTCTTTGTGAGAAATTGGGTCCTGTCA
AACGAAGAACAAAGCTGGAGGGCGCGTATCGAATTATGATCCATGCCGCG
TTGTGCATAATGCAGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACAAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TGTGTCCTGATGCCAAGTCTTTGATCACTGGAGAAAAAAGCCCAAGTAAT
GTTCCAGGCTCTTCGGATCACATTGATTCTGTAACTCGTGTTCATGACTT
TTCTGTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAAATGATGACC
AATGTCGTTCTGCCATGAAGAATGCTTCGTGTTTGGAGCTTTCCCGTAAG
CAATTGGACACTGGCGTAACTAGAGATACGTTCTGGGTAACAATTGGGAC
TCGTTTTAACGATCCTACTGTAGTTACTACGGAGGATTTTCGAGGGGTTA
TTGACGGCATTGAATCCAATGCTTGTCCGCTTGCGCATCGCACTGCCGCT
CTGCTGAAGTCGCATTATCGATACTGGAGAAGGTACTTCACTGAATATTT
TAATAAGTGGCAGCAGTCAGGTCAAAATGATCCTGAACGATTTATTGACT
TCTTGCCAAAGCATGGCAATGTTCTTTATAATTCTTCGAAGCGTTCGTAC
ATTTTGTTTCATGTTTGCAGATGTGGGACAGCAAATTCTGACACAGCATT
GTTGAACATAGTGTCACGGTTCGCGAAAAAGGGTTCAGGTTATGAAGCTG
GAGTTGTTGGCGATGGCAAAAGTGATGGTGAAATTGAACGGCAAAAGAAG
AAAAGACGATCAGCTGACTCGACGAATTTTAAGAATCTTGAGAATTGCCT
TGCCCAAGTCCCGAAATCATCTCTGCACATTTCTGAGGCTTTGACGAGAA
ATAACGAAGCCGTTCTTGCAGACGAGGGAGACTCCAGAGTTCATCAGAAG
CTCGAGCTTCTTCGCGCAGAGCTTCGTAACCGACGTCTGGATAGAAACTA
TGAAGAGAACGACGCTGCATTAAATGCAGAATCCTTTTTGAAGGAGATGT
CTGTGAAGCACATTAACAATTTGATAGATAGTTTGAAGGAGGATTTAGGA
GAGAGCGAAAGATGTTAA
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protein sequence of Ggra1581.t1

>Ggra1581.t1 ID=Ggra1581.t1|Name=Ggra1581.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=506bp
MELRNTPERVAAKARRLSCSLSNPFPNYNQRNNHHVENLFEATTPSANKL
CDAPQSAPPPGNVITVDIEKDIGPISAGRNAVVNASTRRDSLASTECPEP
DFQPRTPDALFTFIVKTLKKEKLQSLCEKLGPVKRRTKLEGAYRIMIHAA
LCIMQEKEVPHCFNDAELNTNFTRFLKENMTWEMCPDAKSLITGEKSPSN
VPGSSDHIDSVTRVHDFSVNEFARLCILLRNDDQCRSAMKNASCLELSRK
QLDTGVTRDTFWVTIGTRFNDPTVVTTEDFRGVIDGIESNACPLAHRTAA
LLKSHYRYWRRYFTEYFNKWQQSGQNDPERFIDFLPKHGNVLYNSSKRSY
ILFHVCRCGTANSDTALLNIVSRFAKKGSGYEAGVVGDGKSDGEIERQKK
KRRSADSTNFKNLENCLAQVPKSSLHISEALTRNNEAVLADEGDSRVHQK
LELLRAELRNRRLDRNYEENDAALNAESFLKEMSVKHINNLIDSLKEDLG
ESERC*
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mRNA from alignment at tig00000844_pilon:607912..609525+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1581.t1 ID=Ggra1581.t1|Name=Ggra1581.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000844_pilon:607912..609525+ (Gracilaria gracilis GNS1m male)
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTTCCCAATTACAACCAGCGAAACAACC
ACCACGTAGAAAATCTTTTTGAAGCGACGACTCCGTCTGCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGGTAACGTCATCACAGTAGA
CATTGAGAAGGATATTGGCCCGATTTCAGCAGGTCGAAATGCAGTTGTTA
ATGCTTCGACGAGACGAGATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTTTCAGCCACGCACTCCGGACGCCCTTTTCACGTTCATCGTGAAAAC
GCTAAAGAAAGAAAAGCTTCAGAGTCTTTGTGAGAAATTGGGTCCTGTCA
AACGAAGAACAAAGCTGGAGGGCGCGTATCGAATTATGATCCATGCCGCG
TTGTGCATAATGCAGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACAAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TGTGTCCTGATGCCAAGTCTTTGATCAGTAAAATTCCAACCGTTGGCGAG
AGAGGAAAGTAGAAAGGAAAGCTACGGGCAGCAAAATTTTATGCTGGTCA
ACCATGGGACACGGATAACGCAGCTGGAGAAAAAAGCCCAAGTAATGTTC
CAGGCTCTTCGGATCACATTGATTCTGTAACTCGTGTTCATGACTTTTCT
GTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAAATGATGACCAATG
TCGTTCTGCCATGAAGAATGCTTCGTGTTTGGAGCTTTCCCGTAAGCAAT
TGGACACTGGCGTAACTAGAGATACGTTCTGGGTAACAATTGGGACTCGT
TTTAACGATCCTACTGTAGTTACTACGGAGGATTTTCGAGGGGTTATTGA
CGGCATTGAATCCAATGCTTGTCCGCTTGCGCATCGCACTGCCGCTCTGC
TGAAGTCGCATTATCGATACTGGAGAAGGTACTTCACTGAATATTTTAAT
AAGTGGCAGCAGTCAGGTCAAAATGATCCTGAACGATTTATTGACTTCTT
GCCAAAGCATGGCAATGTTCTTTATAATTCTTCGAAGCGTTCGTACATTT
TGTTTCATGTTTGCAGATGTGGGACAGCAAATTCTGACACAGCATTGTTG
AACATAGTGTCACGGTTCGCGAAAAAGGGTTCAGGTTATGAAGCTGGAGT
TGTTGGCGATGGCAAAAGTGATGGTGAAATTGAACGGCAAAAGAAGAAAA
GACGATCAGCTGACTCGACGAATTTTAAGAATCTTGAGAATTGCCTTGCC
CAAGTCCCGAAATCATCTCTGCACATTTCTGAGGCTTTGACGAGAAATAA
CGAAGCCGTTCTTGCAGACGAGGGAGACTCCAGAGTTCATCAGAAGCTCG
AGCTTCTTCGCGCAGAGCTTCGTAACCGACGTCTGGATAGAAACTATGAA
GAGAACGACGCTGCATTAAATGCAGAATCCTTTTTGAAGGAGATGTCTGT
GAAGCACATTAACAATTTGATAGATAGTTTGAAGGAGGATTTAGGAGAGA
GCGAAAGATGTTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:607912..609525+

>Ggra1581.t1 ID=Ggra1581.t1|Name=Ggra1581.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1518bp|location=Sequence derived from alignment at tig00000844_pilon:607912..609525+ (Gracilaria gracilis GNS1m male)
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTTCCCAATTACAACCAGCGAAACAACC
ACCACGTAGAAAATCTTTTTGAAGCGACGACTCCGTCTGCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGGTAACGTCATCACAGTAGA
CATTGAGAAGGATATTGGCCCGATTTCAGCAGGTCGAAATGCAGTTGTTA
ATGCTTCGACGAGACGAGATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTTTCAGCCACGCACTCCGGACGCCCTTTTCACGTTCATCGTGAAAAC
GCTAAAGAAAGAAAAGCTTCAGAGTCTTTGTGAGAAATTGGGTCCTGTCA
AACGAAGAACAAAGCTGGAGGGCGCGTATCGAATTATGATCCATGCCGCG
TTGTGCATAATGCAGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACAAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TGTGTCCTGATGCCAAGTCTTTGATCACTGGAGAAAAAAGCCCAAGTAAT
GTTCCAGGCTCTTCGGATCACATTGATTCTGTAACTCGTGTTCATGACTT
TTCTGTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAAATGATGACC
AATGTCGTTCTGCCATGAAGAATGCTTCGTGTTTGGAGCTTTCCCGTAAG
CAATTGGACACTGGCGTAACTAGAGATACGTTCTGGGTAACAATTGGGAC
TCGTTTTAACGATCCTACTGTAGTTACTACGGAGGATTTTCGAGGGGTTA
TTGACGGCATTGAATCCAATGCTTGTCCGCTTGCGCATCGCACTGCCGCT
CTGCTGAAGTCGCATTATCGATACTGGAGAAGGTACTTCACTGAATATTT
TAATAAGTGGCAGCAGTCAGGTCAAAATGATCCTGAACGATTTATTGACT
TCTTGCCAAAGCATGGCAATGTTCTTTATAATTCTTCGAAGCGTTCGTAC
ATTTTGTTTCATGTTTGCAGATGTGGGACAGCAAATTCTGACACAGCATT
GTTGAACATAGTGTCACGGTTCGCGAAAAAGGGTTCAGGTTATGAAGCTG
GAGTTGTTGGCGATGGCAAAAGTGATGGTGAAATTGAACGGCAAAAGAAG
AAAAGACGATCAGCTGACTCGACGAATTTTAAGAATCTTGAGAATTGCCT
TGCCCAAGTCCCGAAATCATCTCTGCACATTTCTGAGGCTTTGACGAGAA
ATAACGAAGCCGTTCTTGCAGACGAGGGAGACTCCAGAGTTCATCAGAAG
CTCGAGCTTCTTCGCGCAGAGCTTCGTAACCGACGTCTGGATAGAAACTA
TGAAGAGAACGACGCTGCATTAAATGCAGAATCCTTTTTGAAGGAGATGT
CTGTGAAGCACATTAACAATTTGATAGATAGTTTGAAGGAGGATTTAGGA
GAGAGCGAAAGATGTTAA
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