Ggra1578.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1578.t1
Unique Name	Ggra1578.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	392

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:559590..560765 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1578	Ggra1578	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 559590..560765 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1578.t1.start1	Ggra1578.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 559590..559592 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1578.t1.CDS1	Ggra1578.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 559590..560765 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1578.t1.exon1	Ggra1578.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 559590..560765 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1578.t1.stop1	Ggra1578.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 560763..560765 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1578.t1	Ggra1578.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 559590..560765 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:559590..560765+
coding sequence from alignment at tig00000844_pilon:559590..560765+

mRNA sequence

>Ggra1578.t1 ID=Ggra1578.t1|Name=Ggra1578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=392bp
MNAYSANVNRTAMKNAFLSTVNYPYTCSLREVKCSTFSFALSIVEAEKKD
KVGELVLERDQALTDLEQISTEKDEVSYEAATLRREKELAGNEIKLLLRR
LQECEQERDDALSHVGVLEQKQKEGELEKICMRQELQKVKEDHQEELHRS
YKVIEDMSAKMQEAETAYGEAVAEVSDLQQTLGNLCTERESLVEKLESAA
NENQRLKMDIDLKNMNRFVLLEELKEVKAKHQEDVEECLQVKKASIHMET
ELNLAHDRNELLRGMLAEKTEYVSTLFRATKDILNLVDVKEERISALETL
KQEVEIELNQQKQTILQCKKYYEDLEVYVNGLTREKQLFANVAQKLHEER
SELLRKQEEFLERHPELAMDISLCLWKERKGQSKAQALICD*

spliced messenger RNA

>Ggra1578.t1 ID=Ggra1578.t1|Name=Ggra1578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000844_pilon:559590..560765+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCTACTCCGCGAACGTCAACAGGACTGCAATGAAGAATGCTTT
TCTGTCAACGGTAAACTACCCTTATACGTGCAGCTTAAGGGAAGTGAAAT
GCAGCACTTTTTCATTTGCATTATCGATTGTTGAAGCAGAGAAAAAGGAC
AAGGTTGGTGAACTGGTCTTAGAAAGGGACCAAGCGCTTACGGACTTAGA
GCAAATATCCACGGAGAAAGATGAGGTTTCGTATGAAGCAGCTACGCTTC
GGAGGGAAAAGGAGCTGGCCGGAAATGAGATTAAACTACTTTTGCGTCGT
CTGCAGGAGTGTGAACAGGAGCGAGACGATGCATTATCACATGTTGGTGT
TTTGGAGCAGAAGCAGAAGGAAGGGGAATTAGAGAAGATATGCATGCGCC
AAGAGCTCCAAAAAGTCAAAGAAGACCACCAGGAAGAGCTCCACCGCTCC
TATAAGGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTGAAACAGC
TTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACGCTGGGAA
ACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATCTGCCGCA
AATGAAAACCAGCGTCTAAAGATGGACATCGATTTGAAAAACATGAATCG
CTTTGTTTTGTTGGAAGAGTTAAAGGAAGTCAAGGCGAAGCACCAAGAAG
ACGTAGAGGAATGCTTGCAAGTCAAGAAAGCGTCTATTCATATGGAAACG
GAACTTAATCTGGCACATGACCGAAATGAACTGCTAAGAGGCATGTTGGC
GGAAAAGACTGAATACGTCAGTACCTTGTTCAGGGCGACAAAAGACATCC
TCAACCTTGTGGATGTGAAAGAAGAAAGGATCTCGGCTTTGGAAACGCTG
AAGCAAGAAGTTGAAATTGAGTTAAACCAGCAGAAGCAAACCATTCTTCA
GTGCAAGAAATACTACGAAGATTTAGAGGTTTATGTGAACGGACTCACTC
GAGAAAAACAATTGTTCGCCAATGTCGCCCAAAAGCTGCATGAAGAACGT
TCTGAGCTTCTCAGGAAACAGGAAGAATTCCTGGAGAGGCATCCAGAACT
TGCGATGGACATATCACTCTGCCTTTGGAAGGAACGAAAAGGGCAGAGTA
AAGCCcaggcccttatttgtgactga

protein sequence of Ggra1578.t1

>Ggra1578.t1 ID=Ggra1578.t1|Name=Ggra1578.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=392bp
MNAYSANVNRTAMKNAFLSTVNYPYTCSLREVKCSTFSFALSIVEAEKKD
KVGELVLERDQALTDLEQISTEKDEVSYEAATLRREKELAGNEIKLLLRR
LQECEQERDDALSHVGVLEQKQKEGELEKICMRQELQKVKEDHQEELHRS
YKVIEDMSAKMQEAETAYGEAVAEVSDLQQTLGNLCTERESLVEKLESAA
NENQRLKMDIDLKNMNRFVLLEELKEVKAKHQEDVEECLQVKKASIHMET
ELNLAHDRNELLRGMLAEKTEYVSTLFRATKDILNLVDVKEERISALETL
KQEVEIELNQQKQTILQCKKYYEDLEVYVNGLTREKQLFANVAQKLHEER
SELLRKQEEFLERHPELAMDISLCLWKERKGQSKAQALICD*

mRNA from alignment at tig00000844_pilon:559590..560765+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1578.t1 ID=Ggra1578.t1|Name=Ggra1578.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1176bp|location=Sequence derived from alignment at tig00000844_pilon:559590..560765+ (Gracilaria gracilis GNS1m male)
ATGAATGCCTACTCCGCGAACGTCAACAGGACTGCAATGAAGAATGCTTT
TCTGTCAACGGTAAACTACCCTTATACGTGCAGCTTAAGGGAAGTGAAAT
GCAGCACTTTTTCATTTGCATTATCGATTGTTGAAGCAGAGAAAAAGGAC
AAGGTTGGTGAACTGGTCTTAGAAAGGGACCAAGCGCTTACGGACTTAGA
GCAAATATCCACGGAGAAAGATGAGGTTTCGTATGAAGCAGCTACGCTTC
GGAGGGAAAAGGAGCTGGCCGGAAATGAGATTAAACTACTTTTGCGTCGT
CTGCAGGAGTGTGAACAGGAGCGAGACGATGCATTATCACATGTTGGTGT
TTTGGAGCAGAAGCAGAAGGAAGGGGAATTAGAGAAGATATGCATGCGCC
AAGAGCTCCAAAAAGTCAAAGAAGACCACCAGGAAGAGCTCCACCGCTCC
TATAAGGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTGAAACAGC
TTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACGCTGGGAA
ACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATCTGCCGCA
AATGAAAACCAGCGTCTAAAGATGGACATCGATTTGAAAAACATGAATCG
CTTTGTTTTGTTGGAAGAGTTAAAGGAAGTCAAGGCGAAGCACCAAGAAG
ACGTAGAGGAATGCTTGCAAGTCAAGAAAGCGTCTATTCATATGGAAACG
GAACTTAATCTGGCACATGACCGAAATGAACTGCTAAGAGGCATGTTGGC
GGAAAAGACTGAATACGTCAGTACCTTGTTCAGGGCGACAAAAGACATCC
TCAACCTTGTGGATGTGAAAGAAGAAAGGATCTCGGCTTTGGAAACGCTG
AAGCAAGAAGTTGAAATTGAGTTAAACCAGCAGAAGCAAACCATTCTTCA
GTGCAAGAAATACTACGAAGATTTAGAGGTTTATGTGAACGGACTCACTC
GAGAAAAACAATTGTTCGCCAATGTCGCCCAAAAGCTGCATGAAGAACGT
TCTGAGCTTCTCAGGAAACAGGAAGAATTCCTGGAGAGGCATCCAGAACT
TGCGATGGACATATCACTCTGCCTTTGGAAGGAACGAAAAGGGCAGAGTA
AAGCCcaggcccttatttgtgactga

Coding sequence (CDS) from alignment at tig00000844_pilon:559590..560765+

>Ggra1578.t1 ID=Ggra1578.t1|Name=Ggra1578.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1176bp|location=Sequence derived from alignment at tig00000844_pilon:559590..560765+ (Gracilaria gracilis GNS1m male)
ATGAATGCCTACTCCGCGAACGTCAACAGGACTGCAATGAAGAATGCTTT
TCTGTCAACGGTAAACTACCCTTATACGTGCAGCTTAAGGGAAGTGAAAT
GCAGCACTTTTTCATTTGCATTATCGATTGTTGAAGCAGAGAAAAAGGAC
AAGGTTGGTGAACTGGTCTTAGAAAGGGACCAAGCGCTTACGGACTTAGA
GCAAATATCCACGGAGAAAGATGAGGTTTCGTATGAAGCAGCTACGCTTC
GGAGGGAAAAGGAGCTGGCCGGAAATGAGATTAAACTACTTTTGCGTCGT
CTGCAGGAGTGTGAACAGGAGCGAGACGATGCATTATCACATGTTGGTGT
TTTGGAGCAGAAGCAGAAGGAAGGGGAATTAGAGAAGATATGCATGCGCC
AAGAGCTCCAAAAAGTCAAAGAAGACCACCAGGAAGAGCTCCACCGCTCC
TATAAGGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTGAAACAGC
TTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACGCTGGGAA
ACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATCTGCCGCA
AATGAAAACCAGCGTCTAAAGATGGACATCGATTTGAAAAACATGAATCG
CTTTGTTTTGTTGGAAGAGTTAAAGGAAGTCAAGGCGAAGCACCAAGAAG
ACGTAGAGGAATGCTTGCAAGTCAAGAAAGCGTCTATTCATATGGAAACG
GAACTTAATCTGGCACATGACCGAAATGAACTGCTAAGAGGCATGTTGGC
GGAAAAGACTGAATACGTCAGTACCTTGTTCAGGGCGACAAAAGACATCC
TCAACCTTGTGGATGTGAAAGAAGAAAGGATCTCGGCTTTGGAAACGCTG
AAGCAAGAAGTTGAAATTGAGTTAAACCAGCAGAAGCAAACCATTCTTCA
GTGCAAGAAATACTACGAAGATTTAGAGGTTTATGTGAACGGACTCACTC
GAGAAAAACAATTGTTCGCCAATGTCGCCCAAAAGCTGCATGAAGAACGT
TCTGAGCTTCTCAGGAAACAGGAAGAATTCCTGGAGAGGCATCCAGAACT
TGCGATGGACATATCACTCTGCCTTTGGAAGGAACGAAAAGGGCAGAGTA
AAGCCcaggcccttatttgtgactga