Ggra1576.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1576.t1
Unique NameGgra1576.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:551724..552389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1576Ggra1576Gracilaria gracilis GNS1m malegenetig00000844_pilon 551724..552389 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1576.t1.stop1Ggra1576.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 551724..551726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1576.t1.CDS1Ggra1576.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 551724..552389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1576.t1.exon1Ggra1576.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 551724..552389 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1576.t1.start1Ggra1576.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 552387..552389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1576.t1Ggra1576.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 551724..552389 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1576.t1 ID=Ggra1576.t1|Name=Ggra1576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MKFVTTLFVSVLLTSALAVTVPERVCPDRCHPHRPLAVQQCEHHIITPLC
VVKSCANGFSCSLPANSFLVANIALSNVELLMEYSWAADRRDLDTSTRFH
GANVGWSCNNPSEYLKWLGDNTSYGGSEYAVVDFEQARIDGVWTDATTVT
ANAGWHGSNQQGEAQLRVWLRGKGSDDLQAGGDSPSVVIHPGVQINCSPH
HVGNVKIVRGEKLTRITVEQA*
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spliced messenger RNA

>Ggra1576.t1 ID=Ggra1576.t1|Name=Ggra1576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000844_pilon:551724..552389- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTCGTCACAACTCTGTTCGTCTCGGTTCTGTTGACATCTGCTTT
GGCAGTGACGGTGCCTGAACGCGTGTGCCCCGATCGCTGCCATCCTCATC
GCCCGCTCGCCGTGCAGCAATGCGAACATCACATCATCACCCCCCTTTGC
GTCGTGAAGAGCTGTGCAAATGGTTTCTCATGCTCCCTGCCGGCAAACTC
ATTCCTGGTGGCCAACATCGCTCTCTCTAACGTGGAGCTTCTGATGGAGT
ACAGCTGGGCTGCCGATCGCCGAGATTTGGACACTAGTACGCGATTCCAT
GGCGCCAACGTTGGATGGAGTTGCAACAACCCCAGTGAGTATCTGAAGTG
GCTTGGAGACAACACGAGTTATGGCGGAAGCGAATATGCGGTGGTGGACT
TTGAGCAAGCTCGCATTGATGGTGTGTGGACTGACGCAACTACGGTTACG
GCGAATGCTGGATGGCACGGCTCCAATCAGCAAGGCGAAGCTCAACTGAG
GGTGTGGCTGCGAGGAAAGGGCAGCGACGATCTTCAAGCCGGAGGAGACA
GCCCGTCGGTTGTGATTCACCCTGGCGTGCAGATCAACTGCTCCCCGCAT
CATGTGGGTAACGTGAAGATCGTTCGCGGAGAGAAATTGACGCGCATTAC
GGTGGAACAAGCGTAA
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protein sequence of Ggra1576.t1

>Ggra1576.t1 ID=Ggra1576.t1|Name=Ggra1576.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MKFVTTLFVSVLLTSALAVTVPERVCPDRCHPHRPLAVQQCEHHIITPLC
VVKSCANGFSCSLPANSFLVANIALSNVELLMEYSWAADRRDLDTSTRFH
GANVGWSCNNPSEYLKWLGDNTSYGGSEYAVVDFEQARIDGVWTDATTVT
ANAGWHGSNQQGEAQLRVWLRGKGSDDLQAGGDSPSVVIHPGVQINCSPH
HVGNVKIVRGEKLTRITVEQA*
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mRNA from alignment at tig00000844_pilon:551724..552389-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1576.t1 ID=Ggra1576.t1|Name=Ggra1576.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000844_pilon:551724..552389- (Gracilaria gracilis GNS1m male)
ATGAAGTTCGTCACAACTCTGTTCGTCTCGGTTCTGTTGACATCTGCTTT
GGCAGTGACGGTGCCTGAACGCGTGTGCCCCGATCGCTGCCATCCTCATC
GCCCGCTCGCCGTGCAGCAATGCGAACATCACATCATCACCCCCCTTTGC
GTCGTGAAGAGCTGTGCAAATGGTTTCTCATGCTCCCTGCCGGCAAACTC
ATTCCTGGTGGCCAACATCGCTCTCTCTAACGTGGAGCTTCTGATGGAGT
ACAGCTGGGCTGCCGATCGCCGAGATTTGGACACTAGTACGCGATTCCAT
GGCGCCAACGTTGGATGGAGTTGCAACAACCCCAGTGAGTATCTGAAGTG
GCTTGGAGACAACACGAGTTATGGCGGAAGCGAATATGCGGTGGTGGACT
TTGAGCAAGCTCGCATTGATGGTGTGTGGACTGACGCAACTACGGTTACG
GCGAATGCTGGATGGCACGGCTCCAATCAGCAAGGCGAAGCTCAACTGAG
GGTGTGGCTGCGAGGAAAGGGCAGCGACGATCTTCAAGCCGGAGGAGACA
GCCCGTCGGTTGTGATTCACCCTGGCGTGCAGATCAACTGCTCCCCGCAT
CATGTGGGTAACGTGAAGATCGTTCGCGGAGAGAAATTGACGCGCATTAC
GGTGGAACAAGCGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:551724..552389-

>Ggra1576.t1 ID=Ggra1576.t1|Name=Ggra1576.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000844_pilon:551724..552389- (Gracilaria gracilis GNS1m male)
ATGAAGTTCGTCACAACTCTGTTCGTCTCGGTTCTGTTGACATCTGCTTT
GGCAGTGACGGTGCCTGAACGCGTGTGCCCCGATCGCTGCCATCCTCATC
GCCCGCTCGCCGTGCAGCAATGCGAACATCACATCATCACCCCCCTTTGC
GTCGTGAAGAGCTGTGCAAATGGTTTCTCATGCTCCCTGCCGGCAAACTC
ATTCCTGGTGGCCAACATCGCTCTCTCTAACGTGGAGCTTCTGATGGAGT
ACAGCTGGGCTGCCGATCGCCGAGATTTGGACACTAGTACGCGATTCCAT
GGCGCCAACGTTGGATGGAGTTGCAACAACCCCAGTGAGTATCTGAAGTG
GCTTGGAGACAACACGAGTTATGGCGGAAGCGAATATGCGGTGGTGGACT
TTGAGCAAGCTCGCATTGATGGTGTGTGGACTGACGCAACTACGGTTACG
GCGAATGCTGGATGGCACGGCTCCAATCAGCAAGGCGAAGCTCAACTGAG
GGTGTGGCTGCGAGGAAAGGGCAGCGACGATCTTCAAGCCGGAGGAGACA
GCCCGTCGGTTGTGATTCACCCTGGCGTGCAGATCAACTGCTCCCCGCAT
CATGTGGGTAACGTGAAGATCGTTCGCGGAGAGAAATTGACGCGCATTAC
GGTGGAACAAGCGTAA
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