Ggra1575.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1575.t1
Unique NameGgra1575.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:524720..525625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1575Ggra1575Gracilaria gracilis GNS1m malegenetig00000844_pilon 524720..525625 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1Ggra1575.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 524720..525625 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1.stop1Ggra1575.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 524720..524722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1.CDS1Ggra1575.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 524720..524981 -
Ggra1575.t1.CDS2Ggra1575.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 525054..525625 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1.exon1Ggra1575.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 524720..524981 -
Ggra1575.t1.exon2Ggra1575.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 525054..525625 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1.intron1Ggra1575.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 524982..525053 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1575.t1.start1Ggra1575.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 525623..525625 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1575.t1 ID=Ggra1575.t1|Name=Ggra1575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MRQELQKAKEDHQEELHRCYKVIEDMSAKMQEAETAYGEAVAEVSDLQQT
LGNLCTERESLVEKLESAANENQRLKMDIDFKDMHRFALLDELESFKVEW
NEDVQKSVEAEKAFTCMEEDFKLAQKQNDLLRGILAEKTDNVSTLFRATK
DMLKLVDVKEERIPALELYQSKQGTWIQRAKSITLGIQLRHDGFDLAPIG
INGRFEGCVDATSNGEDLFRSSEPPAPDGDLREQGNKREPQAAVDLYQNL
VAVETGSEEGDSIWYMCASQLSTHCTW*
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spliced messenger RNA

>Ggra1575.t1 ID=Ggra1575.t1|Name=Ggra1575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000844_pilon:524720..525625- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCAAGAGCTCCAAAAAGCCAAAGAAGACCACCAGGAAGAGCTCCA
CCGCTGCTATAAAGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTG
AAACAGCTTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACG
CTGGGAAACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATC
TGCCGCAAATGAAAACCAGCGTCTAAAGATGGACATCGATTTCAAAGACA
TGCATCGGTTTGCATTGTTGGACGAGCTTGAAAGCTTCAAGGTGGAATGG
AATGAAGATGTGCAAAAATCTGTTGAAGCGGAAAAAGCGTTCACATGTAT
GGAAGAGGATTTTAAACTGGCTCAAAAGCAGAATGATTTACTACGAGGCA
TACTGGCGGAAAAGACGGACAACGTCAGTACCTTGTTTAGAGCCACGAAA
GACATGCTCAAGCTTGTGGATGTGAAGGAAGAAAGGATACCAGCTTTGGA
ATTGTACCAATCGAAGCAAGGAACTTGGATACAGCGTGCGAAAAGCATTA
CCCTTGGTATACAGTTGCGGCACGACGGTTTCGATCTCGCTCCAATCGGA
ATCAATGGAAGGTTCGAAGGCTGTGTTGATGCTACGTCAAACGGCGAAGA
TTTGTTCCGATCGAGTGAGCCACCTGCGCCTGACGGAGATCTCCGGGAAC
AAGGGAACAAAAGGGAACCTCAAGCCGCCGTTGACTTGTATCAAAATTTG
GTTGCAGTTGAAACGGGCAGTGAAGAGGGTGACAGCATATGGTACATGTG
CGCCAGTCAGTTGTCAACGCACTGCACATGGTGA
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protein sequence of Ggra1575.t1

>Ggra1575.t1 ID=Ggra1575.t1|Name=Ggra1575.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MRQELQKAKEDHQEELHRCYKVIEDMSAKMQEAETAYGEAVAEVSDLQQT
LGNLCTERESLVEKLESAANENQRLKMDIDFKDMHRFALLDELESFKVEW
NEDVQKSVEAEKAFTCMEEDFKLAQKQNDLLRGILAEKTDNVSTLFRATK
DMLKLVDVKEERIPALELYQSKQGTWIQRAKSITLGIQLRHDGFDLAPIG
INGRFEGCVDATSNGEDLFRSSEPPAPDGDLREQGNKREPQAAVDLYQNL
VAVETGSEEGDSIWYMCASQLSTHCTW*
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mRNA from alignment at tig00000844_pilon:524720..525625-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1575.t1 ID=Ggra1575.t1|Name=Ggra1575.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=906bp|location=Sequence derived from alignment at tig00000844_pilon:524720..525625- (Gracilaria gracilis GNS1m male)
ATGCGCCAAGAGCTCCAAAAAGCCAAAGAAGACCACCAGGAAGAGCTCCA
CCGCTGCTATAAAGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTG
AAACAGCTTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACG
CTGGGAAACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATC
TGCCGCAAATGAAAACCAGCGTCTAAAGATGGACATCGATTTCAAAGACA
TGCATCGGTTTGCATTGTTGGACGAGCTTGAAAGCTTCAAGGTGGAATGG
AATGAAGATGTGCAAAAATCTGTTGAAGCGGAAAAAGCGTTCACATGTAT
GGAAGAGGATTTTAAACTGGCTCAAAAGCAGAATGATTTACTACGAGGCA
TACTGGCGGAAAAGACGGACAACGTCAGTACCTTGTTTAGAGCCACGAAA
GACATGCTCAAGCTTGTGGATGTGAAGGAAGAAAGGATACCAGCTTTGGA
ATTGTACCAATCGAAGCAAGGAACTTGGATACAGCGTGCGAAAAGCATTA
CCCTTGGTATACAGTTGCGGCAGTGAGTTGTGAACCGTCTGCTCCTGTCG
AGCGCAGTAGCCTTTACTCGCGGTGGTTGTTGCCAAGCGTGCAGCGACGG
TTTCGATCTCGCTCCAATCGGAATCAATGGAAGGTTCGAAGGCTGTGTTG
ATGCTACGTCAAACGGCGAAGATTTGTTCCGATCGAGTGAGCCACCTGCG
CCTGACGGAGATCTCCGGGAACAAGGGAACAAAAGGGAACCTCAAGCCGC
CGTTGACTTGTATCAAAATTTGGTTGCAGTTGAAACGGGCAGTGAAGAGG
GTGACAGCATATGGTACATGTGCGCCAGTCAGTTGTCAACGCACTGCACA
TGGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:524720..525625-

>Ggra1575.t1 ID=Ggra1575.t1|Name=Ggra1575.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000844_pilon:524720..525625- (Gracilaria gracilis GNS1m male)
ATGCGCCAAGAGCTCCAAAAAGCCAAAGAAGACCACCAGGAAGAGCTCCA
CCGCTGCTATAAAGTGATTGAGGATATGAGCGCTAAGATGCAAGAAGCTG
AAACAGCTTATGGAGAAGCTGTTGCGGAAGTGTCAGATCTTCAACAGACG
CTGGGAAACTTGTGTACGGAGCGGGAATCCTTAGTGGAAAAACTAGAATC
TGCCGCAAATGAAAACCAGCGTCTAAAGATGGACATCGATTTCAAAGACA
TGCATCGGTTTGCATTGTTGGACGAGCTTGAAAGCTTCAAGGTGGAATGG
AATGAAGATGTGCAAAAATCTGTTGAAGCGGAAAAAGCGTTCACATGTAT
GGAAGAGGATTTTAAACTGGCTCAAAAGCAGAATGATTTACTACGAGGCA
TACTGGCGGAAAAGACGGACAACGTCAGTACCTTGTTTAGAGCCACGAAA
GACATGCTCAAGCTTGTGGATGTGAAGGAAGAAAGGATACCAGCTTTGGA
ATTGTACCAATCGAAGCAAGGAACTTGGATACAGCGTGCGAAAAGCATTA
CCCTTGGTATACAGTTGCGGCACGACGGTTTCGATCTCGCTCCAATCGGA
ATCAATGGAAGGTTCGAAGGCTGTGTTGATGCTACGTCAAACGGCGAAGA
TTTGTTCCGATCGAGTGAGCCACCTGCGCCTGACGGAGATCTCCGGGAAC
AAGGGAACAAAAGGGAACCTCAAGCCGCCGTTGACTTGTATCAAAATTTG
GTTGCAGTTGAAACGGGCAGTGAAGAGGGTGACAGCATATGGTACATGTG
CGCCAGTCAGTTGTCAACGCACTGCACATGGTGA
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