Ggra1570.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1570.t1
Unique NameGgra1570.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:495928..496743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1570Ggra1570Gracilaria gracilis GNS1m malegenetig00000844_pilon 495928..496743 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1570.t1.stop1Ggra1570.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 495928..495930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1570.t1.CDS1Ggra1570.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 495928..496743 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1570.t1.exon1Ggra1570.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 495928..496743 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1570.t1.start1Ggra1570.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 496741..496743 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1570.t1Ggra1570.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 495928..496743 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1570.t1 ID=Ggra1570.t1|Name=Ggra1570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MVPTNAGIFKEDTLSLLDVDKPHVSVAKGILTRFHIQIANCLVKKPYRQI
DMDGSTKNVKKPETFTSEGFNEMKNTCDKSQRNETRLVEVFEKRADLSCE
DPTNIEHATEDKCLYVETLPERHPPAGSSSTKHIFLQPPFQNQRSRLELD
SVEQLFDGNSELCKHICNDDINSAERYTYLKRNLDALESCQGITVPSFVG
PSESNEVPCTMERSVEPHYRNGIVSYECSAANGTAIESSNHQPINEAVVE
DKIAATESCIVSNSVVQGAHR*
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spliced messenger RNA

>Ggra1570.t1 ID=Ggra1570.t1|Name=Ggra1570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:495928..496743- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACCCACCAACGCTGGTATCTTTAAAGAAGACACGTTATCGTTGCT
TGATGTGGATAAACCACACGTCTCAGTTGCGAAAGGAATTTTGACGCGTT
TCCACATCCAAATCGCGAACTGCCTTGTTAAGAAGCCATACAGACAAATT
GATATGGATGGATCTACGAAAAATGTCAAGAAGCCCGAAACATTCACCTC
TGAGGGTTTCAATGAAATGAAGAACACTTGTGATAAATCTCAGCGAAATG
AAACCCGCCTGGTTGAAGTGTTCGAAAAGCGAGCAGACTTGTCATGTGAA
GACCCCACTAATATCGAGCATGCAACAGAGGATAAGTGTTTATACGTTGA
AACACTGCCTGAAAGACATCCTCCTGCCGGCAGCTCTTCAACGAAACACA
TTTTCTTGCAGCCGCCATTCCAAAATCAAAGGTCACGACTGGAACTTGAT
TCGGTCGAACAGCTCTTCGACGGCAATTCTGAGCTTTGCAAACACATATG
CAATGATGATATCAATAGCGCTGAACGCTACACGTATTTGAAGAGAAACC
TCGATGCTCTTGAGTCATGCCAAGGCATTACAGTTCCTTCTTTCGTTGGA
CCGTCGGAGAGCAATGAGGTTCCCTGCACCATGGAGCGTTCCGTGGAACC
ACATTATAGGAATGGAATTGTTTCCTATGAGTGCTCTGCAGCCAATGGTA
CCGCCATTGAGAGCTCCAATCATCAACCAATCAATGAAGCAGTTGTTGAG
GATAAGATTGCAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCA
GGGAGCACACAGGTAG
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protein sequence of Ggra1570.t1

>Ggra1570.t1 ID=Ggra1570.t1|Name=Ggra1570.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MVPTNAGIFKEDTLSLLDVDKPHVSVAKGILTRFHIQIANCLVKKPYRQI
DMDGSTKNVKKPETFTSEGFNEMKNTCDKSQRNETRLVEVFEKRADLSCE
DPTNIEHATEDKCLYVETLPERHPPAGSSSTKHIFLQPPFQNQRSRLELD
SVEQLFDGNSELCKHICNDDINSAERYTYLKRNLDALESCQGITVPSFVG
PSESNEVPCTMERSVEPHYRNGIVSYECSAANGTAIESSNHQPINEAVVE
DKIAATESCIVSNSVVQGAHR*
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mRNA from alignment at tig00000844_pilon:495928..496743-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1570.t1 ID=Ggra1570.t1|Name=Ggra1570.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:495928..496743- (Gracilaria gracilis GNS1m male)
ATGGTACCCACCAACGCTGGTATCTTTAAAGAAGACACGTTATCGTTGCT
TGATGTGGATAAACCACACGTCTCAGTTGCGAAAGGAATTTTGACGCGTT
TCCACATCCAAATCGCGAACTGCCTTGTTAAGAAGCCATACAGACAAATT
GATATGGATGGATCTACGAAAAATGTCAAGAAGCCCGAAACATTCACCTC
TGAGGGTTTCAATGAAATGAAGAACACTTGTGATAAATCTCAGCGAAATG
AAACCCGCCTGGTTGAAGTGTTCGAAAAGCGAGCAGACTTGTCATGTGAA
GACCCCACTAATATCGAGCATGCAACAGAGGATAAGTGTTTATACGTTGA
AACACTGCCTGAAAGACATCCTCCTGCCGGCAGCTCTTCAACGAAACACA
TTTTCTTGCAGCCGCCATTCCAAAATCAAAGGTCACGACTGGAACTTGAT
TCGGTCGAACAGCTCTTCGACGGCAATTCTGAGCTTTGCAAACACATATG
CAATGATGATATCAATAGCGCTGAACGCTACACGTATTTGAAGAGAAACC
TCGATGCTCTTGAGTCATGCCAAGGCATTACAGTTCCTTCTTTCGTTGGA
CCGTCGGAGAGCAATGAGGTTCCCTGCACCATGGAGCGTTCCGTGGAACC
ACATTATAGGAATGGAATTGTTTCCTATGAGTGCTCTGCAGCCAATGGTA
CCGCCATTGAGAGCTCCAATCATCAACCAATCAATGAAGCAGTTGTTGAG
GATAAGATTGCAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCA
GGGAGCACACAGGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:495928..496743-

>Ggra1570.t1 ID=Ggra1570.t1|Name=Ggra1570.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:495928..496743- (Gracilaria gracilis GNS1m male)
ATGGTACCCACCAACGCTGGTATCTTTAAAGAAGACACGTTATCGTTGCT
TGATGTGGATAAACCACACGTCTCAGTTGCGAAAGGAATTTTGACGCGTT
TCCACATCCAAATCGCGAACTGCCTTGTTAAGAAGCCATACAGACAAATT
GATATGGATGGATCTACGAAAAATGTCAAGAAGCCCGAAACATTCACCTC
TGAGGGTTTCAATGAAATGAAGAACACTTGTGATAAATCTCAGCGAAATG
AAACCCGCCTGGTTGAAGTGTTCGAAAAGCGAGCAGACTTGTCATGTGAA
GACCCCACTAATATCGAGCATGCAACAGAGGATAAGTGTTTATACGTTGA
AACACTGCCTGAAAGACATCCTCCTGCCGGCAGCTCTTCAACGAAACACA
TTTTCTTGCAGCCGCCATTCCAAAATCAAAGGTCACGACTGGAACTTGAT
TCGGTCGAACAGCTCTTCGACGGCAATTCTGAGCTTTGCAAACACATATG
CAATGATGATATCAATAGCGCTGAACGCTACACGTATTTGAAGAGAAACC
TCGATGCTCTTGAGTCATGCCAAGGCATTACAGTTCCTTCTTTCGTTGGA
CCGTCGGAGAGCAATGAGGTTCCCTGCACCATGGAGCGTTCCGTGGAACC
ACATTATAGGAATGGAATTGTTTCCTATGAGTGCTCTGCAGCCAATGGTA
CCGCCATTGAGAGCTCCAATCATCAACCAATCAATGAAGCAGTTGTTGAG
GATAAGATTGCAGCAACGGAGAGCTGCATTGTGTCGAACTCTGTGGTTCA
GGGAGCACACAGGTAG
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