Ggra1569.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1569.t1
Unique Name	Ggra1569.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	457

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:493126..494496 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1569	Ggra1569	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 493126..494496 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1569.t1.start1	Ggra1569.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 493126..493128 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1569.t1.CDS1	Ggra1569.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 493126..494496 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1569.t1.exon1	Ggra1569.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 493126..494496 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1569.t1.stop1	Ggra1569.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 494494..494496 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1569.t1	Ggra1569.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 493126..494496 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:493126..494496+
coding sequence from alignment at tig00000844_pilon:493126..494496+

mRNA sequence

>Ggra1569.t1 ID=Ggra1569.t1|Name=Ggra1569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MYHLSAAAPAVCNKPRRWQTAFDNPAHIQHAAGEAALLRSQISQLRKQLE
IASSKTAVLELEKNHAFNQLALERQNKQVAQAEASRLSRRLRLCESERDE
AKRQVSMLEEEQNISSIENEALLVNFERVQHALQRSDTNATQLEKKMVEL
QTDRTVFAEEHQLMKRERNGFKAHLEHKQVQYCYVINQLNDAKEHQAEQA
REASHLNESLQRLDIDLNMSEAQNKALRATVAEMTDHVQAAVNSVKHLNT
LLDTKDEKLSLFERREEQWQQILEDVKENSQQWERYRHEMEQHVHLVEGQ
KSMLSLKLEQVKKKLSDDRRFQDEFLGRNPILAMDILHCLKKENLAMKKT
DENEPCTFETKSGVGSMNTIGDNLEHCSNYVSISGVPQNEGDENNGVKRR
KKKRRRVECWRFGESAHDLCDCQSFADSETSEQSEDEGVNHINAEWTTGR
KRAFHR*

spliced messenger RNA

>Ggra1569.t1 ID=Ggra1569.t1|Name=Ggra1569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000844_pilon:493126..494496+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCACTTGAGCGCTGCTGCCCCTGCCGTGTGCAACAAACCGCGCCG
CTGGCAAACCGCTTTCGACAACCCCGCCCACATCCAACATGCTGCAGGCG
AAGCTGCACTGTTGCGATCCCAAATCTCACAGCTTAGGAAGCAGCTCGAG
ATAGCTTCTTCGAAAACAGCCGTATTGGAACTGGAAAAGAACCACGCCTT
CAATCAGCTTGCTCTCGAGCGCCAGAACAAGCAGGTGGCACAAGCTGAAG
CGAGCCGTCTCTCCCGCCGTCTCAGACTCTGTGAGAGCGAAAGAGATGAA
GCGAAACGGCAAGTCTCAATGTTGGAAGAAGAACAAAACATATCTTCCAT
TGAGAACGAGGCGCTACTTGTCAACTTCGAACGCGTCCAGCATGCGCTTC
AACGTTCTGACACCAACGCCACACAACTGGAGAAGAAGATGGTGGAGCTC
CAGACGGATCGAACAGTTTTTGCTGAAGAGCATCAACTAATGAAGAGGGA
AAGGAATGGCTTCAAGGCGCACCTGGAGCATAAACAAGTTCAATACTGTT
ACGTCATCAACCAGTTAAATGATGCAAAGGAGCATCAGGCAGAGCAGGCT
CGCGAAGCTTCGCACTTGAACGAATCGCTTCAACGCCTCGATATCGACTT
GAATATGTCCGAAGCGCAAAATAAAGCATTGAGAGCCACGGTAGCAGAAA
TGACCGATCATGTTCAAGCAGCGGTAAACTCTGTGAAGCATCTTAACACC
CTTCTTGACACGAAAGACGAGAAGCTGTCTTTGTTCGAAAGGCGTGAAGA
GCAGTGGCAACAAATACTGGAAGACGTGAAAGAAAATTCCCAACAGTGGG
AAAGATATCGTCATGAAATGGAACAGCATGTCCATCTTGTTGAAGGGCAG
AAGAGCATGCTTTCTTTGAAACTAGAACAAGTGAAGAAGAAACTATCAGA
TGATCGCAGGTTTCAGGATGAGTTCTTGGGAAGGAATCCAATTCTTGCAA
TGGATATCTTACACTGTTTGAAAAAAGAGAACCTGGCGATGAAGAAAACC
GATGAGAATGAGCCATGCACCTTTGAGACGAAGTCAGGTGTGGGTTCTAT
GAATACGATTGGTGACAATTTGGAACACTGCTCAAACTATGTCAGTATAT
CTGGTGTACCACAGAATGAAGGTGATGAAAACAATGGTGTGAAGAGGAGG
AAGAAAAAACGCCGCCGTGTGGAATGCTGGCGTTTTGGGGAAAGCGCCCA
TGATCTATGCGACTGTCAATCCTTTGCAGATTCAGAGACGTCTGAACAGA
GTGAAGACGAAGGCGTCAACCATATCAACGCCGAATGGACGACTGGGCGA
AAGCGTGCATTCCATCGCTAG

protein sequence of Ggra1569.t1

>Ggra1569.t1 ID=Ggra1569.t1|Name=Ggra1569.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MYHLSAAAPAVCNKPRRWQTAFDNPAHIQHAAGEAALLRSQISQLRKQLE
IASSKTAVLELEKNHAFNQLALERQNKQVAQAEASRLSRRLRLCESERDE
AKRQVSMLEEEQNISSIENEALLVNFERVQHALQRSDTNATQLEKKMVEL
QTDRTVFAEEHQLMKRERNGFKAHLEHKQVQYCYVINQLNDAKEHQAEQA
REASHLNESLQRLDIDLNMSEAQNKALRATVAEMTDHVQAAVNSVKHLNT
LLDTKDEKLSLFERREEQWQQILEDVKENSQQWERYRHEMEQHVHLVEGQ
KSMLSLKLEQVKKKLSDDRRFQDEFLGRNPILAMDILHCLKKENLAMKKT
DENEPCTFETKSGVGSMNTIGDNLEHCSNYVSISGVPQNEGDENNGVKRR
KKKRRRVECWRFGESAHDLCDCQSFADSETSEQSEDEGVNHINAEWTTGR
KRAFHR*

mRNA from alignment at tig00000844_pilon:493126..494496+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1569.t1 ID=Ggra1569.t1|Name=Ggra1569.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000844_pilon:493126..494496+ (Gracilaria gracilis GNS1m male)
ATGTACCACTTGAGCGCTGCTGCCCCTGCCGTGTGCAACAAACCGCGCCG
CTGGCAAACCGCTTTCGACAACCCCGCCCACATCCAACATGCTGCAGGCG
AAGCTGCACTGTTGCGATCCCAAATCTCACAGCTTAGGAAGCAGCTCGAG
ATAGCTTCTTCGAAAACAGCCGTATTGGAACTGGAAAAGAACCACGCCTT
CAATCAGCTTGCTCTCGAGCGCCAGAACAAGCAGGTGGCACAAGCTGAAG
CGAGCCGTCTCTCCCGCCGTCTCAGACTCTGTGAGAGCGAAAGAGATGAA
GCGAAACGGCAAGTCTCAATGTTGGAAGAAGAACAAAACATATCTTCCAT
TGAGAACGAGGCGCTACTTGTCAACTTCGAACGCGTCCAGCATGCGCTTC
AACGTTCTGACACCAACGCCACACAACTGGAGAAGAAGATGGTGGAGCTC
CAGACGGATCGAACAGTTTTTGCTGAAGAGCATCAACTAATGAAGAGGGA
AAGGAATGGCTTCAAGGCGCACCTGGAGCATAAACAAGTTCAATACTGTT
ACGTCATCAACCAGTTAAATGATGCAAAGGAGCATCAGGCAGAGCAGGCT
CGCGAAGCTTCGCACTTGAACGAATCGCTTCAACGCCTCGATATCGACTT
GAATATGTCCGAAGCGCAAAATAAAGCATTGAGAGCCACGGTAGCAGAAA
TGACCGATCATGTTCAAGCAGCGGTAAACTCTGTGAAGCATCTTAACACC
CTTCTTGACACGAAAGACGAGAAGCTGTCTTTGTTCGAAAGGCGTGAAGA
GCAGTGGCAACAAATACTGGAAGACGTGAAAGAAAATTCCCAACAGTGGG
AAAGATATCGTCATGAAATGGAACAGCATGTCCATCTTGTTGAAGGGCAG
AAGAGCATGCTTTCTTTGAAACTAGAACAAGTGAAGAAGAAACTATCAGA
TGATCGCAGGTTTCAGGATGAGTTCTTGGGAAGGAATCCAATTCTTGCAA
TGGATATCTTACACTGTTTGAAAAAAGAGAACCTGGCGATGAAGAAAACC
GATGAGAATGAGCCATGCACCTTTGAGACGAAGTCAGGTGTGGGTTCTAT
GAATACGATTGGTGACAATTTGGAACACTGCTCAAACTATGTCAGTATAT
CTGGTGTACCACAGAATGAAGGTGATGAAAACAATGGTGTGAAGAGGAGG
AAGAAAAAACGCCGCCGTGTGGAATGCTGGCGTTTTGGGGAAAGCGCCCA
TGATCTATGCGACTGTCAATCCTTTGCAGATTCAGAGACGTCTGAACAGA
GTGAAGACGAAGGCGTCAACCATATCAACGCCGAATGGACGACTGGGCGA
AAGCGTGCATTCCATCGCTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:493126..494496+

>Ggra1569.t1 ID=Ggra1569.t1|Name=Ggra1569.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000844_pilon:493126..494496+ (Gracilaria gracilis GNS1m male)
ATGTACCACTTGAGCGCTGCTGCCCCTGCCGTGTGCAACAAACCGCGCCG
CTGGCAAACCGCTTTCGACAACCCCGCCCACATCCAACATGCTGCAGGCG
AAGCTGCACTGTTGCGATCCCAAATCTCACAGCTTAGGAAGCAGCTCGAG
ATAGCTTCTTCGAAAACAGCCGTATTGGAACTGGAAAAGAACCACGCCTT
CAATCAGCTTGCTCTCGAGCGCCAGAACAAGCAGGTGGCACAAGCTGAAG
CGAGCCGTCTCTCCCGCCGTCTCAGACTCTGTGAGAGCGAAAGAGATGAA
GCGAAACGGCAAGTCTCAATGTTGGAAGAAGAACAAAACATATCTTCCAT
TGAGAACGAGGCGCTACTTGTCAACTTCGAACGCGTCCAGCATGCGCTTC
AACGTTCTGACACCAACGCCACACAACTGGAGAAGAAGATGGTGGAGCTC
CAGACGGATCGAACAGTTTTTGCTGAAGAGCATCAACTAATGAAGAGGGA
AAGGAATGGCTTCAAGGCGCACCTGGAGCATAAACAAGTTCAATACTGTT
ACGTCATCAACCAGTTAAATGATGCAAAGGAGCATCAGGCAGAGCAGGCT
CGCGAAGCTTCGCACTTGAACGAATCGCTTCAACGCCTCGATATCGACTT
GAATATGTCCGAAGCGCAAAATAAAGCATTGAGAGCCACGGTAGCAGAAA
TGACCGATCATGTTCAAGCAGCGGTAAACTCTGTGAAGCATCTTAACACC
CTTCTTGACACGAAAGACGAGAAGCTGTCTTTGTTCGAAAGGCGTGAAGA
GCAGTGGCAACAAATACTGGAAGACGTGAAAGAAAATTCCCAACAGTGGG
AAAGATATCGTCATGAAATGGAACAGCATGTCCATCTTGTTGAAGGGCAG
AAGAGCATGCTTTCTTTGAAACTAGAACAAGTGAAGAAGAAACTATCAGA
TGATCGCAGGTTTCAGGATGAGTTCTTGGGAAGGAATCCAATTCTTGCAA
TGGATATCTTACACTGTTTGAAAAAAGAGAACCTGGCGATGAAGAAAACC
GATGAGAATGAGCCATGCACCTTTGAGACGAAGTCAGGTGTGGGTTCTAT
GAATACGATTGGTGACAATTTGGAACACTGCTCAAACTATGTCAGTATAT
CTGGTGTACCACAGAATGAAGGTGATGAAAACAATGGTGTGAAGAGGAGG
AAGAAAAAACGCCGCCGTGTGGAATGCTGGCGTTTTGGGGAAAGCGCCCA
TGATCTATGCGACTGTCAATCCTTTGCAGATTCAGAGACGTCTGAACAGA
GTGAAGACGAAGGCGTCAACCATATCAACGCCGAATGGACGACTGGGCGA
AAGCGTGCATTCCATCGCTAG