Ggra1568.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1568.t1
Unique NameGgra1568.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length326
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:490408..491964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1568Ggra1568Gracilaria gracilis GNS1m malegenetig00000844_pilon 490408..491964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1Ggra1568.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 490408..491964 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1.stop1Ggra1568.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 490408..490410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1.CDS1Ggra1568.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 490408..491280 -
Ggra1568.t1.CDS2Ggra1568.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 491860..491964 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1.exon1Ggra1568.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 490408..491280 -
Ggra1568.t1.exon2Ggra1568.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 491860..491964 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1.intron1Ggra1568.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 491281..491859 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1568.t1.start1Ggra1568.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 491962..491964 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1568.t1 ID=Ggra1568.t1|Name=Ggra1568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MKRSRASDDDGAPSLASVQPLDLHQLADDLELSETLSPSSTPLSTPPKSP
TLSSASGVSAASSVGGAFVARRALCKPPSPSSSFASKLTASPERLVSMRA
ARAPQPSPSQLHEQLSQLSLADPPPPPLHAPLEDFFDADIDDSAVAHNAF
PTDDDISTLRLLRDRSQSTPEPRRPTPQSPTTPERQPSLRRLHSSRTVRR
VAKSAVQDVERLASLRRRITGDMRVDRRLAHLRLLQSQLRARRARLPSAE
DAKQRLTGALDKLREKKRQALIEQQRRLSSSFRVPKLGDVPRNVKLPPLR
RPSRRTKDQRITSSPTDIRRTSFAT*
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spliced messenger RNA

>Ggra1568.t1 ID=Ggra1568.t1|Name=Ggra1568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000844_pilon:490408..491964- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACGTAGCCGCGCATCCGACGACGACGGCGCGCCGTCGCTGGCCAG
CGTGCAGCCGCTCGATCTGCACCAACTCGCCGACGACCTCGAGCTCTCCG
AGACGCTCTCGCCGTCCAGCACGCCGCTGTCCACGCCGCCCAAGTCGCCC
ACGCTCAGCAGTGCGTCTGGCGTGTCGGCTGCCTCGTCTGTCGGCGGCGC
GTTTGTCGCTCGCCGCGCGCTGTGCAAGCCGCCGTCGCCGTCGTCGTCGT
TCGCATCGAAGCTCACGGCGTCGCCAGAGCGCCTTGTATCCATGCGTGCC
GCGCGTGCGCCGCAGCCGTCGCCGAGTCAGCTGCATGAGCAGCTTTCACA
GCTTTCTCTGGCCGATCCGCCGCCGCCGCCGCTGCACGCGCCCTTGGAGG
ACTTTTTCGATGCCGATATCGATGACAGTGCGGTTGCGCACAACGCGTTT
CCGACCGATGATGATATTTCCACCTTGCGCTTGCTGCGAGACCGCTCGCA
ATCTACGCCGGAGCCGCGCCGTCCGACGCCGCAGTCGCCCACCACGCCGG
AGCGCCAGCCTTCTTTGAGACGCTTGCATTCGTCGCGCACCGTCAGGCGC
GTGGCCAAGTCGGCCGTGCAGGACGTGGAACGGCTTGCGTCGCTGCGACG
TCGAATCACCGGTGATATGCGCGTGGACAGGCGTCTTGCGCATTTACGAC
TTTTGCAATCGCAACTTCGAGCGAGAAGGGCTCGTTTGCCTTCTGCGGAG
GATGCGAAGCAACGTTTGACCGGCGCTTTGGACAAACTGCGAGAGAAAAA
GAGACAGGCTTTGATAGAACAACAGAGACGGCTTTCAAGCTCGTTTAGGG
TCCCCAAGCTTGGTGATGTTCCGAGGAATGTCAAGCTACCACCGCTGCGA
AGACCTTCGAGAAGGACAAAGGACCAGAGGATCACTTCGAGTCCTACGGA
TATACGTCGCACTAGTTTTGCTACTTGA
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protein sequence of Ggra1568.t1

>Ggra1568.t1 ID=Ggra1568.t1|Name=Ggra1568.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MKRSRASDDDGAPSLASVQPLDLHQLADDLELSETLSPSSTPLSTPPKSP
TLSSASGVSAASSVGGAFVARRALCKPPSPSSSFASKLTASPERLVSMRA
ARAPQPSPSQLHEQLSQLSLADPPPPPLHAPLEDFFDADIDDSAVAHNAF
PTDDDISTLRLLRDRSQSTPEPRRPTPQSPTTPERQPSLRRLHSSRTVRR
VAKSAVQDVERLASLRRRITGDMRVDRRLAHLRLLQSQLRARRARLPSAE
DAKQRLTGALDKLREKKRQALIEQQRRLSSSFRVPKLGDVPRNVKLPPLR
RPSRRTKDQRITSSPTDIRRTSFAT*
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mRNA from alignment at tig00000844_pilon:490408..491964-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1568.t1 ID=Ggra1568.t1|Name=Ggra1568.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000844_pilon:490408..491964- (Gracilaria gracilis GNS1m male)
ATGAAACGTAGCCGCGCATCCGACGACGACGGCGCGCCGTCGCTGGCCAG
CGTGCAGCCGCTCGATCTGCACCAACTCGCCGACGACCTCGAGCTCTCCG
AGACGGTGCGCCACTCCGTGCAGCAGATCGTCGACGAGTGGGACGACGCC
CCCGCCGCGCCCGAGCGCTCGCCCGCCCGCGCCTCGCTCGCGTCGCACCC
CATGAAGCTCTGGGCCTCCATCCGTCGCCTGTGGAGCGCCGTCATCCCCG
CCGACCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGTCGCCGCCGTCG
CAACCACACCCGCCCGCCGTCGCTGGCGCTACACGCAGCCTGCTTTCGTC
GCGCCCCGGCCTGGCCGCGCGCCCGCACGCCGCCTCCGTGGCGTCGGCGC
GCGCGCGCCGCTTCCTCACCGCCGCCGACAAGGCGCGCGCCGCGCTCAAG
CCGCCCGCGTCGGCCGCCGCCGTGCCGCCGGACGCCGCCGTCGACCCGTT
CTTCACGCCGCCGCGCCAGCCATCGCAGCCAGCGGCGCCGCTGCGCGTGG
CGCGTCGACTGCCGCCGCCGCCGCGCCAGCCGCGCCGCGCCGCGCGTCCG
CGCGCGCGCCCGCTCGCGCACACTGCCGCCGCGCGCGATCGCCGCGTGCC
GCCCGCGTGCCCGCCGTGCTCGCCGCTCAGCCAGCTCTCGCCGTCCAGCA
CGCCGCTGTCCACGCCGCCCAAGTCGCCCACGCTCAGCAGTGCGTCTGGC
GTGTCGGCTGCCTCGTCTGTCGGCGGCGCGTTTGTCGCTCGCCGCGCGCT
GTGCAAGCCGCCGTCGCCGTCGTCGTCGTTCGCATCGAAGCTCACGGCGT
CGCCAGAGCGCCTTGTATCCATGCGTGCCGCGCGTGCGCCGCAGCCGTCG
CCGAGTCAGCTGCATGAGCAGCTTTCACAGCTTTCTCTGGCCGATCCGCC
GCCGCCGCCGCTGCACGCGCCCTTGGAGGACTTTTTCGATGCCGATATCG
ATGACAGTGCGGTTGCGCACAACGCGTTTCCGACCGATGATGATATTTCC
ACCTTGCGCTTGCTGCGAGACCGCTCGCAATCTACGCCGGAGCCGCGCCG
TCCGACGCCGCAGTCGCCCACCACGCCGGAGCGCCAGCCTTCTTTGAGAC
GCTTGCATTCGTCGCGCACCGTCAGGCGCGTGGCCAAGTCGGCCGTGCAG
GACGTGGAACGGCTTGCGTCGCTGCGACGTCGAATCACCGGTGATATGCG
CGTGGACAGGCGTCTTGCGCATTTACGACTTTTGCAATCGCAACTTCGAG
CGAGAAGGGCTCGTTTGCCTTCTGCGGAGGATGCGAAGCAACGTTTGACC
GGCGCTTTGGACAAACTGCGAGAGAAAAAGAGACAGGCTTTGATAGAACA
ACAGAGACGGCTTTCAAGCTCGTTTAGGGTCCCCAAGCTTGGTGATGTTC
CGAGGAATGTCAAGCTACCACCGCTGCGAAGACCTTCGAGAAGGACAAAG
GACCAGAGGATCACTTCGAGTCCTACGGATATACGTCGCACTAGTTTTGC
TACTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:490408..491964-

>Ggra1568.t1 ID=Ggra1568.t1|Name=Ggra1568.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000844_pilon:490408..491964- (Gracilaria gracilis GNS1m male)
ATGAAACGTAGCCGCGCATCCGACGACGACGGCGCGCCGTCGCTGGCCAG
CGTGCAGCCGCTCGATCTGCACCAACTCGCCGACGACCTCGAGCTCTCCG
AGACGCTCTCGCCGTCCAGCACGCCGCTGTCCACGCCGCCCAAGTCGCCC
ACGCTCAGCAGTGCGTCTGGCGTGTCGGCTGCCTCGTCTGTCGGCGGCGC
GTTTGTCGCTCGCCGCGCGCTGTGCAAGCCGCCGTCGCCGTCGTCGTCGT
TCGCATCGAAGCTCACGGCGTCGCCAGAGCGCCTTGTATCCATGCGTGCC
GCGCGTGCGCCGCAGCCGTCGCCGAGTCAGCTGCATGAGCAGCTTTCACA
GCTTTCTCTGGCCGATCCGCCGCCGCCGCCGCTGCACGCGCCCTTGGAGG
ACTTTTTCGATGCCGATATCGATGACAGTGCGGTTGCGCACAACGCGTTT
CCGACCGATGATGATATTTCCACCTTGCGCTTGCTGCGAGACCGCTCGCA
ATCTACGCCGGAGCCGCGCCGTCCGACGCCGCAGTCGCCCACCACGCCGG
AGCGCCAGCCTTCTTTGAGACGCTTGCATTCGTCGCGCACCGTCAGGCGC
GTGGCCAAGTCGGCCGTGCAGGACGTGGAACGGCTTGCGTCGCTGCGACG
TCGAATCACCGGTGATATGCGCGTGGACAGGCGTCTTGCGCATTTACGAC
TTTTGCAATCGCAACTTCGAGCGAGAAGGGCTCGTTTGCCTTCTGCGGAG
GATGCGAAGCAACGTTTGACCGGCGCTTTGGACAAACTGCGAGAGAAAAA
GAGACAGGCTTTGATAGAACAACAGAGACGGCTTTCAAGCTCGTTTAGGG
TCCCCAAGCTTGGTGATGTTCCGAGGAATGTCAAGCTACCACCGCTGCGA
AGACCTTCGAGAAGGACAAAGGACCAGAGGATCACTTCGAGTCCTACGGA
TATACGTCGCACTAGTTTTGCTACTTGA
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