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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 7668.SPU_003095-tr |
| PFAMs | RVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2 |
| Max annot lvl | 33208|Metazoa |
| Evalue | 2.43e-118 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria |
| Description | K02A2.6-like |
| COG category | E |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1565.t1.stop1 | Ggra1565.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000844_pilon 473866..473868 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1565.t1.start1 | Ggra1565.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000844_pilon 476593..476595 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1565.t1 ID=Ggra1565.t1|Name=Ggra1565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=910bp MPFGLRNAPATFQRALDIILSKVKWRTALVYIDDVIIYSRTVEEHFHHVR EVLNLLRESGVTLKLRKCEFFTKEVEYLGHIISPGRLEVTPRNIRAVQEA KPPTSQTEIRSFIGLCNVYRRFIKGFAKIAAPLNRKLLKGQPTRFECLTN EEMDAFEALKHALLTPPILALPKAGLRYTLDTDASDAQIGCCLMQEQENG DKLPIGYWSRALHAAEKNYTTTEKECLAVVWSMLMLRPYLYGERFTLRTD HDALRWILGLADASGRLARWRLRLSEFEYDVQYRPGIKHNVADAMSRITT DGLDTEPVEDDIPCFTISTNPDGDTLEGYWTLPEEDTWFSDAIAREILAL EETDVMPITREEFLREQANDVYCRSLMDQVGMKDSNFDVDRNGFLVRRAP IDGSLQKVVPKVLRPRVLYLAHYPRLSGHPGGTRMYYTLRQGYYWPHMAN DIYTFVGQCESCVRTRGGLRKHRKYLKLFPAAGPLEFVAIDLLGPLPKTT RGYQYIIVITDRFSKLTRAIPLKDTKSTTLAVAFLNNWIYPYGAPLYLLT DNGSNLASKFFEAVCNLLGIKHYFTTAYHPQTNGQVERFNRTLVSRLRHY TEEHQTGWDELVQPLTYAYNLQVHRATQTTPFDLILSRHPPGIVVEGDPL GQEAAGALTPSQVKRNTLLRLRRALKYAESKLTASQKRYKEDYDRKVTQV VTATPGQYVFIDHPPKGAKPRPGDEADDEAIDRDINSKLLPKSSGPFKVV RSTDHTVTVNQDGVENTISIDRITVAPQTVQSRKERGESARDPQAVALRT QPREDGTPIEVNDDAQGDDPDYVPPAGITVAPSEETPTPSGTDAHLNQSG ETIPAQVSNEFPVERLVGHRRTQEGLKYTVRWYGWGADGDTAEPPSAIPH HFRVSYWNR* back to topspliced messenger RNA >Ggra1565.t1 ID=Ggra1565.t1|Name=Ggra1565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2730bp|location=Sequence derived from alignment at tig00000844_pilon:473866..476595- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCTTTGGGTTGCGAAATGCCCCGGCTACCTTTCAGAGGGCGTTAGA TATAATCCTTTCGAAGGTGAAGTGGAGAACCGCTCTAGTATACATCGATG ATGTAATCATATATTCCAGAACGGTAGAGGAACATTTCCACCATGTTAGG GAAGTTTTGAACCTTTTGAGGGAATCTGGAGTAACGTTGAAGCTCCGCAA GTGCGAATTCTTCACCAAAGAGGTAGAATACCTTGGTCATATCATCAGCC CTGGGAGGTTAGAAGTGACGCCGCGGAATATCCGGGCCGTGCAGGAGGCG AAGCCACCCACGTCCCAGACGGAAATCCGATCCTTTATAGGTTTGTGCAA TGTGTACCGCCGGTTTATCAAGGGATTTGCCAAGATAGCGGCTCCCCTCA ACAGGAAGCTGCTGAAAGGTCAACCTACAAGGTTTGAATGTCTTACCAAT GAGGAAATGGATGCGTTCGAGGCGCTGAAACATGCGCTCTTGACACCTCC CATCTTGGCATTACCCAAAGCTGGTTTACGATACACGTTGGATACTGACG CTTCGGACGCCCAAATTGGTTGTTGTCTTATGCAGGAGCAAGAAAACGGC GACAAACTACCTATAGGGTACTGGAGCCGTGCTTTGCACGCTGCAGAAAA GAACTACACAACAACCGAAAAGGAATGTCTGGCAGTAGTCTGGAGCATGT TGATGCTCCGTCCCTACCTATATGGTGAAAGGTTCACGCTTCGAACCGAC CATGATGCCCTACGGTGGATACTGGGTCTGGCCGACGCATCAGGCAGACT TGCCCGATGGCGGTTACGACTTTCAGAGTTCGAGTATGACGTACAGTACC GTCCAGGTATCAAGCACAATGTCGCAGACGCGATGTCTCGCATTACCACA GATGGTTTGGACACCGAGCCGGTAGAGGATGATATCCCATGCTTTACCAT CTCTACCAACCCTGATGGTGATACCTTAGAAGGTTACTGGACTCTACCCG AAGAGGATACGTGGTTTAGTGATGCCATCGCTCGGGAAATACTCGCCCTC GAGGAAACAGACGTCATGCCAATTACCCGCGAGGAATTCCTGAGAGAGCA AGCAAACGATGTTTATTGCCGCTCTCTCATGGACCAAGTAGGTATGAAAG ACTCGAACTTTGACGTCGACCGAAATGGTTTCCTGGTGAGGCGAGCTCCT ATTGATGGTTCCCTTCAGAAGGTAGTGCCCAAGGTGCTGCGCCCTCGGGT GCTGTACCTAGCCCACTACCCAAGGCTATCAGGACACCCTGGAGGTACGA GAATGTACTACACCTTGAGGCAAGGGTACTACTGGCCTCATATGGCTAAT GATATATATACCTTTGTAGGTCAATGTGAATCTTGCGTACGTACCCGTGG AGGTCTCCGGAAGCACAGGAAATACTTGAAGTTATTCCCTGCAGCGGGTC CTCTCGAGTTCGTCGCAATAGACCTTCTGGGTCCATTACCAAAAACCACA AGGGGATATCAGTACATCATCGTAATCACCGACAGGTTCTCGAAGCTCAC GCGAGCGATACCCTTGAAGGACACGAAATCGACGACCCTCGCGGTGGCGT TCTTGAACAATTGGATCTACCCGTATGGTGCACCGCTTTATCTACTTACC GACAATGGTTCGAACTTAGCTTCGAAGTTCTTTGAAGCTGTTTGTAACCT CTTGGGTATTAAGCACTACTTCACTACTGCCTACCATCCGCAAACGAATG GGCAAGTGGAGCGCTTTAACCGAACACTGGTATCTAGGCTGCGACATTAT ACGGAAGAACACCAAACTGGTTGGGACGAGCTCGTGCAGCCCTTGACATA TGCATATAACCTTCAGGTTCATCGAGCGACGCAAACTACGCCGTTCGATC TAATACTGTCAAGACACCCACCAGGTATTGTTGTTGAAGGGGACCCATTA GGACAAGAAGCCGCCGGAGCGCTCACACCGTCACAGGTCAAACGGAATAC CCTTTTGAGGTTGAGACGTGCTCTCAAGTATGCTGAGAGCAAGCTCACAG CATCCCAGAAGAGGTACAAGGAGGACTACGACCGTAAGGTAACCCAAGTG GTAACGGCTACGCCGGGTCAATATGTCTTTATTGACCACCCTCCGAAAGG AGCTAAACCACGACCGGGTGATGAAGCTGATGATGAAGCTATTGATAGAG ATATCAATTCTAAGCTTCTTCCGAAATCATCGGGACCTTTCAAGGTAGTT CGGTCGACCGACCACACGGTAACGGTGAACCAAGATGGTGTAGAGAATAC AATCTCTATTGACCGAATCACGGTTGCACCTCAGACGGTTCAGTCCAGGA AGGAACGCGGAGAATCCGCGCGTGACCCACAAGCGGTTGCCCTGAGGACT CAGCCCCGGGAAGACGGGACACCCATCGAGGTTAATGATGACGCACAGGG TGACGACCCAGACTACGTACCACCTGCGGGGATTACGGTTGCTCCTTCAG AGGAAACACCTACCCCTAGTGGTACCGATGCTCATCTAAACCAAAGTGGT GAAACGATACCAGCCCAGGTCTCTAATGAGTTCCCAGTGGAACGCCTTGT AGGTCACCGCCGTACCCAAGAAGGTCTGAAGTACACAGTACGCTGGTATG GCTGGGGGGCTGACGGTGATACCGCCGAGCCGCCCTCAGCCATACCACAC CATTTCAGGGTAAGCTACTGGAACCGCTAA back to topprotein sequence of Ggra1565.t1 >Ggra1565.t1 ID=Ggra1565.t1|Name=Ggra1565.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=910bp
MPFGLRNAPATFQRALDIILSKVKWRTALVYIDDVIIYSRTVEEHFHHVR EVLNLLRESGVTLKLRKCEFFTKEVEYLGHIISPGRLEVTPRNIRAVQEA KPPTSQTEIRSFIGLCNVYRRFIKGFAKIAAPLNRKLLKGQPTRFECLTN EEMDAFEALKHALLTPPILALPKAGLRYTLDTDASDAQIGCCLMQEQENG DKLPIGYWSRALHAAEKNYTTTEKECLAVVWSMLMLRPYLYGERFTLRTD HDALRWILGLADASGRLARWRLRLSEFEYDVQYRPGIKHNVADAMSRITT DGLDTEPVEDDIPCFTISTNPDGDTLEGYWTLPEEDTWFSDAIAREILAL EETDVMPITREEFLREQANDVYCRSLMDQVGMKDSNFDVDRNGFLVRRAP IDGSLQKVVPKVLRPRVLYLAHYPRLSGHPGGTRMYYTLRQGYYWPHMAN DIYTFVGQCESCVRTRGGLRKHRKYLKLFPAAGPLEFVAIDLLGPLPKTT RGYQYIIVITDRFSKLTRAIPLKDTKSTTLAVAFLNNWIYPYGAPLYLLT DNGSNLASKFFEAVCNLLGIKHYFTTAYHPQTNGQVERFNRTLVSRLRHY TEEHQTGWDELVQPLTYAYNLQVHRATQTTPFDLILSRHPPGIVVEGDPL GQEAAGALTPSQVKRNTLLRLRRALKYAESKLTASQKRYKEDYDRKVTQV VTATPGQYVFIDHPPKGAKPRPGDEADDEAIDRDINSKLLPKSSGPFKVV RSTDHTVTVNQDGVENTISIDRITVAPQTVQSRKERGESARDPQAVALRT QPREDGTPIEVNDDAQGDDPDYVPPAGITVAPSEETPTPSGTDAHLNQSG ETIPAQVSNEFPVERLVGHRRTQEGLKYTVRWYGWGADGDTAEPPSAIPH HFRVSYWNR* back to topmRNA from alignment at tig00000844_pilon:473866..476595- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1565.t1 ID=Ggra1565.t1|Name=Ggra1565.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2730bp|location=Sequence derived from alignment at tig00000844_pilon:473866..476595- (Gracilaria gracilis GNS1m male) ATGCCCTTTGGGTTGCGAAATGCCCCGGCTACCTTTCAGAGGGCGTTAGA
TATAATCCTTTCGAAGGTGAAGTGGAGAACCGCTCTAGTATACATCGATG
ATGTAATCATATATTCCAGAACGGTAGAGGAACATTTCCACCATGTTAGG
GAAGTTTTGAACCTTTTGAGGGAATCTGGAGTAACGTTGAAGCTCCGCAA
GTGCGAATTCTTCACCAAAGAGGTAGAATACCTTGGTCATATCATCAGCC
CTGGGAGGTTAGAAGTGACGCCGCGGAATATCCGGGCCGTGCAGGAGGCG
AAGCCACCCACGTCCCAGACGGAAATCCGATCCTTTATAGGTTTGTGCAA
TGTGTACCGCCGGTTTATCAAGGGATTTGCCAAGATAGCGGCTCCCCTCA
ACAGGAAGCTGCTGAAAGGTCAACCTACAAGGTTTGAATGTCTTACCAAT
GAGGAAATGGATGCGTTCGAGGCGCTGAAACATGCGCTCTTGACACCTCC
CATCTTGGCATTACCCAAAGCTGGTTTACGATACACGTTGGATACTGACG
CTTCGGACGCCCAAATTGGTTGTTGTCTTATGCAGGAGCAAGAAAACGGC
GACAAACTACCTATAGGGTACTGGAGCCGTGCTTTGCACGCTGCAGAAAA
GAACTACACAACAACCGAAAAGGAATGTCTGGCAGTAGTCTGGAGCATGT
TGATGCTCCGTCCCTACCTATATGGTGAAAGGTTCACGCTTCGAACCGAC
CATGATGCCCTACGGTGGATACTGGGTCTGGCCGACGCATCAGGCAGACT
TGCCCGATGGCGGTTACGACTTTCAGAGTTCGAGTATGACGTACAGTACC
GTCCAGGTATCAAGCACAATGTCGCAGACGCGATGTCTCGCATTACCACA
GATGGTTTGGACACCGAGCCGGTAGAGGATGATATCCCATGCTTTACCAT
CTCTACCAACCCTGATGGTGATACCTTAGAAGGTTACTGGACTCTACCCG
AAGAGGATACGTGGTTTAGTGATGCCATCGCTCGGGAAATACTCGCCCTC
GAGGAAACAGACGTCATGCCAATTACCCGCGAGGAATTCCTGAGAGAGCA
AGCAAACGATGTTTATTGCCGCTCTCTCATGGACCAAGTAGGTATGAAAG
ACTCGAACTTTGACGTCGACCGAAATGGTTTCCTGGTGAGGCGAGCTCCT
ATTGATGGTTCCCTTCAGAAGGTAGTGCCCAAGGTGCTGCGCCCTCGGGT
GCTGTACCTAGCCCACTACCCAAGGCTATCAGGACACCCTGGAGGTACGA
GAATGTACTACACCTTGAGGCAAGGGTACTACTGGCCTCATATGGCTAAT
GATATATATACCTTTGTAGGTCAATGTGAATCTTGCGTACGTACCCGTGG
AGGTCTCCGGAAGCACAGGAAATACTTGAAGTTATTCCCTGCAGCGGGTC
CTCTCGAGTTCGTCGCAATAGACCTTCTGGGTCCATTACCAAAAACCACA
AGGGGATATCAGTACATCATCGTAATCACCGACAGGTTCTCGAAGCTCAC
GCGAGCGATACCCTTGAAGGACACGAAATCGACGACCCTCGCGGTGGCGT
TCTTGAACAATTGGATCTACCCGTATGGTGCACCGCTTTATCTACTTACC
GACAATGGTTCGAACTTAGCTTCGAAGTTCTTTGAAGCTGTTTGTAACCT
CTTGGGTATTAAGCACTACTTCACTACTGCCTACCATCCGCAAACGAATG
GGCAAGTGGAGCGCTTTAACCGAACACTGGTATCTAGGCTGCGACATTAT
ACGGAAGAACACCAAACTGGTTGGGACGAGCTCGTGCAGCCCTTGACATA
TGCATATAACCTTCAGGTTCATCGAGCGACGCAAACTACGCCGTTCGATC
TAATACTGTCAAGACACCCACCAGGTATTGTTGTTGAAGGGGACCCATTA
GGACAAGAAGCCGCCGGAGCGCTCACACCGTCACAGGTCAAACGGAATAC
CCTTTTGAGGTTGAGACGTGCTCTCAAGTATGCTGAGAGCAAGCTCACAG
CATCCCAGAAGAGGTACAAGGAGGACTACGACCGTAAGGTAACCCAAGTG
GTAACGGCTACGCCGGGTCAATATGTCTTTATTGACCACCCTCCGAAAGG
AGCTAAACCACGACCGGGTGATGAAGCTGATGATGAAGCTATTGATAGAG
ATATCAATTCTAAGCTTCTTCCGAAATCATCGGGACCTTTCAAGGTAGTT
CGGTCGACCGACCACACGGTAACGGTGAACCAAGATGGTGTAGAGAATAC
AATCTCTATTGACCGAATCACGGTTGCACCTCAGACGGTTCAGTCCAGGA
AGGAACGCGGAGAATCCGCGCGTGACCCACAAGCGGTTGCCCTGAGGACT
CAGCCCCGGGAAGACGGGACACCCATCGAGGTTAATGATGACGCACAGGG
TGACGACCCAGACTACGTACCACCTGCGGGGATTACGGTTGCTCCTTCAG
AGGAAACACCTACCCCTAGTGGTACCGATGCTCATCTAAACCAAAGTGGT
GAAACGATACCAGCCCAGGTCTCTAATGAGTTCCCAGTGGAACGCCTTGT
AGGTCACCGCCGTACCCAAGAAGGTCTGAAGTACACAGTACGCTGGTATG
GCTGGGGGGCTGACGGTGATACCGCCGAGCCGCCCTCAGCCATACCACAC
CATTTCAGGGTAAGCTACTGGAACCGCTAA back to topCoding sequence (CDS) from alignment at tig00000844_pilon:473866..476595- >Ggra1565.t1 ID=Ggra1565.t1|Name=Ggra1565.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2730bp|location=Sequence derived from alignment at tig00000844_pilon:473866..476595- (Gracilaria gracilis GNS1m male) ATGCCCTTTGGGTTGCGAAATGCCCCGGCTACCTTTCAGAGGGCGTTAGA TATAATCCTTTCGAAGGTGAAGTGGAGAACCGCTCTAGTATACATCGATG ATGTAATCATATATTCCAGAACGGTAGAGGAACATTTCCACCATGTTAGG GAAGTTTTGAACCTTTTGAGGGAATCTGGAGTAACGTTGAAGCTCCGCAA GTGCGAATTCTTCACCAAAGAGGTAGAATACCTTGGTCATATCATCAGCC CTGGGAGGTTAGAAGTGACGCCGCGGAATATCCGGGCCGTGCAGGAGGCG AAGCCACCCACGTCCCAGACGGAAATCCGATCCTTTATAGGTTTGTGCAA TGTGTACCGCCGGTTTATCAAGGGATTTGCCAAGATAGCGGCTCCCCTCA ACAGGAAGCTGCTGAAAGGTCAACCTACAAGGTTTGAATGTCTTACCAAT GAGGAAATGGATGCGTTCGAGGCGCTGAAACATGCGCTCTTGACACCTCC CATCTTGGCATTACCCAAAGCTGGTTTACGATACACGTTGGATACTGACG CTTCGGACGCCCAAATTGGTTGTTGTCTTATGCAGGAGCAAGAAAACGGC GACAAACTACCTATAGGGTACTGGAGCCGTGCTTTGCACGCTGCAGAAAA GAACTACACAACAACCGAAAAGGAATGTCTGGCAGTAGTCTGGAGCATGT TGATGCTCCGTCCCTACCTATATGGTGAAAGGTTCACGCTTCGAACCGAC CATGATGCCCTACGGTGGATACTGGGTCTGGCCGACGCATCAGGCAGACT TGCCCGATGGCGGTTACGACTTTCAGAGTTCGAGTATGACGTACAGTACC GTCCAGGTATCAAGCACAATGTCGCAGACGCGATGTCTCGCATTACCACA GATGGTTTGGACACCGAGCCGGTAGAGGATGATATCCCATGCTTTACCAT CTCTACCAACCCTGATGGTGATACCTTAGAAGGTTACTGGACTCTACCCG AAGAGGATACGTGGTTTAGTGATGCCATCGCTCGGGAAATACTCGCCCTC GAGGAAACAGACGTCATGCCAATTACCCGCGAGGAATTCCTGAGAGAGCA AGCAAACGATGTTTATTGCCGCTCTCTCATGGACCAAGTAGGTATGAAAG ACTCGAACTTTGACGTCGACCGAAATGGTTTCCTGGTGAGGCGAGCTCCT ATTGATGGTTCCCTTCAGAAGGTAGTGCCCAAGGTGCTGCGCCCTCGGGT GCTGTACCTAGCCCACTACCCAAGGCTATCAGGACACCCTGGAGGTACGA GAATGTACTACACCTTGAGGCAAGGGTACTACTGGCCTCATATGGCTAAT GATATATATACCTTTGTAGGTCAATGTGAATCTTGCGTACGTACCCGTGG AGGTCTCCGGAAGCACAGGAAATACTTGAAGTTATTCCCTGCAGCGGGTC CTCTCGAGTTCGTCGCAATAGACCTTCTGGGTCCATTACCAAAAACCACA AGGGGATATCAGTACATCATCGTAATCACCGACAGGTTCTCGAAGCTCAC GCGAGCGATACCCTTGAAGGACACGAAATCGACGACCCTCGCGGTGGCGT TCTTGAACAATTGGATCTACCCGTATGGTGCACCGCTTTATCTACTTACC GACAATGGTTCGAACTTAGCTTCGAAGTTCTTTGAAGCTGTTTGTAACCT CTTGGGTATTAAGCACTACTTCACTACTGCCTACCATCCGCAAACGAATG GGCAAGTGGAGCGCTTTAACCGAACACTGGTATCTAGGCTGCGACATTAT ACGGAAGAACACCAAACTGGTTGGGACGAGCTCGTGCAGCCCTTGACATA TGCATATAACCTTCAGGTTCATCGAGCGACGCAAACTACGCCGTTCGATC TAATACTGTCAAGACACCCACCAGGTATTGTTGTTGAAGGGGACCCATTA GGACAAGAAGCCGCCGGAGCGCTCACACCGTCACAGGTCAAACGGAATAC CCTTTTGAGGTTGAGACGTGCTCTCAAGTATGCTGAGAGCAAGCTCACAG CATCCCAGAAGAGGTACAAGGAGGACTACGACCGTAAGGTAACCCAAGTG GTAACGGCTACGCCGGGTCAATATGTCTTTATTGACCACCCTCCGAAAGG AGCTAAACCACGACCGGGTGATGAAGCTGATGATGAAGCTATTGATAGAG ATATCAATTCTAAGCTTCTTCCGAAATCATCGGGACCTTTCAAGGTAGTT CGGTCGACCGACCACACGGTAACGGTGAACCAAGATGGTGTAGAGAATAC AATCTCTATTGACCGAATCACGGTTGCACCTCAGACGGTTCAGTCCAGGA AGGAACGCGGAGAATCCGCGCGTGACCCACAAGCGGTTGCCCTGAGGACT CAGCCCCGGGAAGACGGGACACCCATCGAGGTTAATGATGACGCACAGGG TGACGACCCAGACTACGTACCACCTGCGGGGATTACGGTTGCTCCTTCAG AGGAAACACCTACCCCTAGTGGTACCGATGCTCATCTAAACCAAAGTGGT GAAACGATACCAGCCCAGGTCTCTAATGAGTTCCCAGTGGAACGCCTTGT AGGTCACCGCCGTACCCAAGAAGGTCTGAAGTACACAGTACGCTGGTATG GCTGGGGGGCTGACGGTGATACCGCCGAGCCGCCCTCAGCCATACCACAC CATTTCAGGGTAAGCTACTGGAACCGCTAA back to top
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