Ggra1562.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1562.t1
Unique NameGgra1562.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:466813..467838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog273371.XP_003867070.1
PFAMsMethyltransf_16
Max annot lvl4751|Fungi
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018023,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032259,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112,GO:2000765
Evalue4.9e-11
EggNOG OGsKOG2497@1|root,KOG2497@2759|Eukaryota,39S3Q@33154|Opisthokonta,3NXXF@4751|Fungi,3QN5G@4890|Ascomycota,3RTTU@4891|Saccharomycetes,47BCQ@766764|Debaryomycetaceae
DescriptionLysine methyltransferase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1562Ggra1562Gracilaria gracilis GNS1m malegenetig00000844_pilon 466813..467838 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1562.t1.stop1Ggra1562.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 466813..466815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1562.t1.CDS1Ggra1562.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 466813..467838 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1562.t1.exon1Ggra1562.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 466813..467838 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1562.t1.start1Ggra1562.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 467836..467838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1562.t1Ggra1562.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 466813..467838 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1562.t1 ID=Ggra1562.t1|Name=Ggra1562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MVTEMRETTDRDRQEVLKKATSHFGKGFRAGVPLRRIFDQTQALFGDVAW
KTAIAQRLLLQETVLYQSQLTRSISEFCFGHSRCARFFRLLMDEVDRCSM
GDVHESVVELAAQYCIRKDFPHTDVHTIHHMPPDDQEVVLLVSERFSDLG
ARVWEAGLSLCHQLFDVHSAIRNDVKGATVLELGAGTGLSAPAYVNAGAK
TALLTDYKQKTIDRIRENLRNNNISDVVQTALLDASDLPKLRNVIRDFEV
DVIIAADVTYDMDLVEIMVRAFSDSISGPRVGYLLATDRNPKTTFFLEQQ
LLKTGVTVTEMMVDDAENSFPRLLGSFKCRISTLKLTSSHC*
back to top

spliced messenger RNA

>Ggra1562.t1 ID=Ggra1562.t1|Name=Ggra1562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000844_pilon:466813..467838- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACAGAAATGCGGGAAACCACCGATCGAGACCGACAGGAAGTATT
GAAGAAAGCTACGTCTCACTTTGGAAAGGGATTTAGAGCTGGCGTCCCTC
TTCGAAGGATCTTCGATCAAACGCAGGCCTTGTTTGGTGACGTGGCGTGG
AAGACTGCCATCGCACAGAGACTATTACTGCAAGAAACTGTTCTGTACCA
AAGCCAACTTACGCGCAGTATCTCCGAGTTCTGCTTCGGACACTCAAGAT
GTGCTCGGTTTTTCAGACTACTCATGGATGAAGTGGATCGATGCAGTATG
GGAGACGTACACGAATCTGTAGTGGAGTTGGCTGCCCAATATTGTATACG
GAAGGACTTTCCGCACACAGACGTTCATACCATACACCATATGCCACCAG
ATGATCAAGAAGTTGTTCTTCTTGTGTCTGAACGCTTCAGCGATCTGGGG
GCACGGGTCTGGGAGGCTGGTCTTAGTCTATGTCATCAACTCTTCGATGT
CCACAGCGCCATACGGAATGATGTAAAGGGGGCGACAGTACTCGAGCTTG
GAGCCGGTACCGGTTTATCAGCCCCAGCATATGTGAACGCCGGAGCGAAG
ACTGCTTTGCTCACAGACTACAAACAGAAGACGATTGATAGAATTCGGGA
GAACCTTCGAAACAACAACATTTCAGATGTAGTTCAGACCGCGTTGCTCG
ATGCAAGTGACTTGCCGAAGCTGCGAAACGTGATCCGCGATTTTGAAGTA
GACGTCATCATAGCAGCTGATGTTACCTACGATATGGACTTGGTGGAGAT
TATGGTGAGGGCGTTTTCTGATTCGATTAGCGGACCCCGAGTAGGGTATC
TTCTCGCTACAGATCGAAACCCGAAGACTACGTTTTTCTTGGAACAACAA
CTTTTGAAGACGGGAGTAACGGTTACAGAGATGATGGTTGACGATGCAGA
GAATTCCTTTCCTCGCTTACTTGGTTCCTTCAAGTGCAGAATCTCGACTC
TAAAACTCACCAGCAGTCACTGCTAA
back to top

protein sequence of Ggra1562.t1

>Ggra1562.t1 ID=Ggra1562.t1|Name=Ggra1562.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MVTEMRETTDRDRQEVLKKATSHFGKGFRAGVPLRRIFDQTQALFGDVAW
KTAIAQRLLLQETVLYQSQLTRSISEFCFGHSRCARFFRLLMDEVDRCSM
GDVHESVVELAAQYCIRKDFPHTDVHTIHHMPPDDQEVVLLVSERFSDLG
ARVWEAGLSLCHQLFDVHSAIRNDVKGATVLELGAGTGLSAPAYVNAGAK
TALLTDYKQKTIDRIRENLRNNNISDVVQTALLDASDLPKLRNVIRDFEV
DVIIAADVTYDMDLVEIMVRAFSDSISGPRVGYLLATDRNPKTTFFLEQQ
LLKTGVTVTEMMVDDAENSFPRLLGSFKCRISTLKLTSSHC*
back to top

mRNA from alignment at tig00000844_pilon:466813..467838-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1562.t1 ID=Ggra1562.t1|Name=Ggra1562.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000844_pilon:466813..467838- (Gracilaria gracilis GNS1m male)
ATGGTTACAGAAATGCGGGAAACCACCGATCGAGACCGACAGGAAGTATT
GAAGAAAGCTACGTCTCACTTTGGAAAGGGATTTAGAGCTGGCGTCCCTC
TTCGAAGGATCTTCGATCAAACGCAGGCCTTGTTTGGTGACGTGGCGTGG
AAGACTGCCATCGCACAGAGACTATTACTGCAAGAAACTGTTCTGTACCA
AAGCCAACTTACGCGCAGTATCTCCGAGTTCTGCTTCGGACACTCAAGAT
GTGCTCGGTTTTTCAGACTACTCATGGATGAAGTGGATCGATGCAGTATG
GGAGACGTACACGAATCTGTAGTGGAGTTGGCTGCCCAATATTGTATACG
GAAGGACTTTCCGCACACAGACGTTCATACCATACACCATATGCCACCAG
ATGATCAAGAAGTTGTTCTTCTTGTGTCTGAACGCTTCAGCGATCTGGGG
GCACGGGTCTGGGAGGCTGGTCTTAGTCTATGTCATCAACTCTTCGATGT
CCACAGCGCCATACGGAATGATGTAAAGGGGGCGACAGTACTCGAGCTTG
GAGCCGGTACCGGTTTATCAGCCCCAGCATATGTGAACGCCGGAGCGAAG
ACTGCTTTGCTCACAGACTACAAACAGAAGACGATTGATAGAATTCGGGA
GAACCTTCGAAACAACAACATTTCAGATGTAGTTCAGACCGCGTTGCTCG
ATGCAAGTGACTTGCCGAAGCTGCGAAACGTGATCCGCGATTTTGAAGTA
GACGTCATCATAGCAGCTGATGTTACCTACGATATGGACTTGGTGGAGAT
TATGGTGAGGGCGTTTTCTGATTCGATTAGCGGACCCCGAGTAGGGTATC
TTCTCGCTACAGATCGAAACCCGAAGACTACGTTTTTCTTGGAACAACAA
CTTTTGAAGACGGGAGTAACGGTTACAGAGATGATGGTTGACGATGCAGA
GAATTCCTTTCCTCGCTTACTTGGTTCCTTCAAGTGCAGAATCTCGACTC
TAAAACTCACCAGCAGTCACTGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000844_pilon:466813..467838-

>Ggra1562.t1 ID=Ggra1562.t1|Name=Ggra1562.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000844_pilon:466813..467838- (Gracilaria gracilis GNS1m male)
ATGGTTACAGAAATGCGGGAAACCACCGATCGAGACCGACAGGAAGTATT
GAAGAAAGCTACGTCTCACTTTGGAAAGGGATTTAGAGCTGGCGTCCCTC
TTCGAAGGATCTTCGATCAAACGCAGGCCTTGTTTGGTGACGTGGCGTGG
AAGACTGCCATCGCACAGAGACTATTACTGCAAGAAACTGTTCTGTACCA
AAGCCAACTTACGCGCAGTATCTCCGAGTTCTGCTTCGGACACTCAAGAT
GTGCTCGGTTTTTCAGACTACTCATGGATGAAGTGGATCGATGCAGTATG
GGAGACGTACACGAATCTGTAGTGGAGTTGGCTGCCCAATATTGTATACG
GAAGGACTTTCCGCACACAGACGTTCATACCATACACCATATGCCACCAG
ATGATCAAGAAGTTGTTCTTCTTGTGTCTGAACGCTTCAGCGATCTGGGG
GCACGGGTCTGGGAGGCTGGTCTTAGTCTATGTCATCAACTCTTCGATGT
CCACAGCGCCATACGGAATGATGTAAAGGGGGCGACAGTACTCGAGCTTG
GAGCCGGTACCGGTTTATCAGCCCCAGCATATGTGAACGCCGGAGCGAAG
ACTGCTTTGCTCACAGACTACAAACAGAAGACGATTGATAGAATTCGGGA
GAACCTTCGAAACAACAACATTTCAGATGTAGTTCAGACCGCGTTGCTCG
ATGCAAGTGACTTGCCGAAGCTGCGAAACGTGATCCGCGATTTTGAAGTA
GACGTCATCATAGCAGCTGATGTTACCTACGATATGGACTTGGTGGAGAT
TATGGTGAGGGCGTTTTCTGATTCGATTAGCGGACCCCGAGTAGGGTATC
TTCTCGCTACAGATCGAAACCCGAAGACTACGTTTTTCTTGGAACAACAA
CTTTTGAAGACGGGAGTAACGGTTACAGAGATGATGGTTGACGATGCAGA
GAATTCCTTTCCTCGCTTACTTGGTTCCTTCAAGTGCAGAATCTCGACTC
TAAAACTCACCAGCAGTCACTGCTAA
back to top