Ggra1554.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1554.t1
Unique NameGgra1554.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:451516..452719 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4529.ORUFI03G42510.2
PFAMsPirin,Pirin_C
Max annot lvl35493|Streptophyta
KEGG koko:K06911
GOsGO:0001101,GO:0003674,GO:0004857,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0008150,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009637,GO:0009719,GO:0009725,GO:0009737,GO:0009738,GO:0009755,GO:0009785,GO:0009892,GO:0009987,GO:0010033,GO:0010466,GO:0010605,GO:0016020,GO:0019222,GO:0023052,GO:0030162,GO:0030234,GO:0030414,GO:0030522,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032870,GO:0033993,GO:0042221,GO:0042742,GO:0043086,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044424,GO:0044444,GO:0044464,GO:0045861,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051704,GO:0051707,GO:0051716,GO:0052547,GO:0060255,GO:0061134,GO:0065007,GO:0065009,GO:0070887,GO:0071214,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071478,GO:0071482,GO:0071483,GO:0071495,GO:0071944,GO:0080090,GO:0097305,GO:0097306,GO:0098542,GO:0098772,GO:0104004,GO:1901700,GO:1901701
Evalue3.61e-105
EggNOG OGsCOG1741@1|root,2QQ5A@2759|Eukaryota,37REZ@33090|Viridiplantae,3G8XY@35493|Streptophyta,3KXJ1@4447|Liliopsida,3I94H@38820|Poales
DescriptionBelongs to the pirin family
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1554Ggra1554Gracilaria gracilis GNS1m malegenetig00000844_pilon 451516..452719 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1Ggra1554.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 451516..452719 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1.stop1Ggra1554.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 451516..451518 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1.CDS1Ggra1554.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 451516..451943 -
Ggra1554.t1.CDS2Ggra1554.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 452040..452496 -
Ggra1554.t1.CDS3Ggra1554.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 452603..452719 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1.exon1Ggra1554.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 451516..451943 -
Ggra1554.t1.exon2Ggra1554.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 452040..452496 -
Ggra1554.t1.exon3Ggra1554.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 452603..452719 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1.intron1Ggra1554.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 451944..452039 -
Ggra1554.t1.intron2Ggra1554.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 452497..452602 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1554.t1.start1Ggra1554.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 452717..452719 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1554.t1 ID=Ggra1554.t1|Name=Ggra1554.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MCPRRRNTQQTIPKHSDHKRRTHRILYLLYLVPFSILILSLLRPSLLQTV
SKRFTHSTANMTAFRDVNKVVIAREQSEGVGARVRRSIGSTELPNLDPFL
LLDEFNVTKPAGFPDHPHRGMQTVTYMLEGAFRHEDNKGHAGTIGVGDLQ
WMTAGRGIVHSEMPATEGSNIGLQLWVNLAANDKMTKPQYQELLAEDVPL
AKSEDGSIEVKVIAGKCFDVESKVFTQTPTLYWDVRMLKGATFEERIPEQ
YNTFIYVLEGKVTTGRKKVEGEHGACMVFGPGEGVRVESEDEARFVVLAG
QPLDEPIVQHGPFVMNTREQIMQAFRDYSAGKF*
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spliced messenger RNA

>Ggra1554.t1 ID=Ggra1554.t1|Name=Ggra1554.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000844_pilon:451516..452719- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTCCTCGTCGAAGAAATACACAGCAGACCATACCGAAACACTCCGA
CCACAAGCGACGAACCCATCGCATCCTCTACCTGCTCTACCTCGTGCCGT
TTTCTATTCTGATATTGTCACTTTTGCGACCCAGTCTTTTGCAAACCGTA
TCGAAGCGATTCACGCATTCCACCGCCAACATGACTGCCTTTCGCGACGT
GAACAAAGTCGTCATTGCGCGCGAGCAATCAGAGGGTGTTGGTGCCCGCG
TAAGAAGAAGTATTGGATCAACCGAACTGCCCAATTTGGACCCTTTTCTG
CTGCTCGATGAATTCAATGTCACCAAACCGGCTGGCTTCCCAGACCATCC
CCATCGCGGAATGCAGACCGTCACCTACATGCTCGAGGGAGCCTTCCGTC
ATGAGGATAACAAGGGCCATGCCGGTACTATTGGAGTGGGTGATTTGCAG
TGGATGACCGCCGGTCGTGGCATTGTTCACAGTGAAATGCCTGCTACTGA
AGGTAGCAACATTGGATTGCAACTATGGGTGAATCTTGCCGCGAACGATA
AGATGACAAAGCCACAGTATCAAGAACTTTTGGCGGAGGATGTGCCCTTG
GCCAAGAGCGAAGACGGCTCGATCGAAGTGAAGGTCATTGCTGGTAAATG
CTTTGATGTTGAAAGCAAGGTGTTCACGCAAACACCAACCCTGTATTGGG
ATGTGAGAATGTTGAAGGGTGCTACTTTTGAGGAACGGATACCTGAACAA
TACAATACCTTCATCTACGTACTAGAGGGAAAAGTTACCACAGGGAGAAA
GAAGGTTGAGGGTGAGCATGGAGCTTGCATGGTATTCGGTCCCGGTGAAG
GCGTTCGGGTTGAATCTGAGGATGAAGCTAGATTTGTTGTCCTCGCAGGA
CAGCCCTTAGACGAGCCAATTGTACAACACGGTCCATTTGTCATGAACAC
CAGGGAGCAAATCATGCAAGCATTCCGGGACTATTCTGCTGGCAAGTTTT
AA
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protein sequence of Ggra1554.t1

>Ggra1554.t1 ID=Ggra1554.t1|Name=Ggra1554.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MCPRRRNTQQTIPKHSDHKRRTHRILYLLYLVPFSILILSLLRPSLLQTV
SKRFTHSTANMTAFRDVNKVVIAREQSEGVGARVRRSIGSTELPNLDPFL
LLDEFNVTKPAGFPDHPHRGMQTVTYMLEGAFRHEDNKGHAGTIGVGDLQ
WMTAGRGIVHSEMPATEGSNIGLQLWVNLAANDKMTKPQYQELLAEDVPL
AKSEDGSIEVKVIAGKCFDVESKVFTQTPTLYWDVRMLKGATFEERIPEQ
YNTFIYVLEGKVTTGRKKVEGEHGACMVFGPGEGVRVESEDEARFVVLAG
QPLDEPIVQHGPFVMNTREQIMQAFRDYSAGKF*
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mRNA from alignment at tig00000844_pilon:451516..452719-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1554.t1 ID=Ggra1554.t1|Name=Ggra1554.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1204bp|location=Sequence derived from alignment at tig00000844_pilon:451516..452719- (Gracilaria gracilis GNS1m male)
ATGTGTCCTCGTCGAAGAAATACACAGCAGACCATACCGAAACACTCCGA
CCACAAGCGACGAACCCATCGCATCCTCTACCTGCTCTACCTCGTGCCGT
TTTCTATTCTGATATTGGTAAGCATCCGCACAAAGTGTTTATAAAACACC
CATCTTGTCCTGCGTCTTTCATCACCTCATGTCCTCGGCATTCATTACTC
ATACAATTCCCTTTCATTCAAAGTCACTTTTGCGACCCAGTCTTTTGCAA
ACCGTATCGAAGCGATTCACGCATTCCACCGCCAACATGACTGCCTTTCG
CGACGTGAACAAAGTCGTCATTGCGCGCGAGCAATCAGAGGGTGTTGGTG
CCCGCGTAAGAAGAAGTATTGGATCAACCGAACTGCCCAATTTGGACCCT
TTTCTGCTGCTCGATGAATTCAATGTCACCAAACCGGCTGGCTTCCCAGA
CCATCCCCATCGCGGAATGCAGACCGTCACCTACATGCTCGAGGGAGCCT
TCCGTCATGAGGATAACAAGGGCCATGCCGGTACTATTGGAGTGGGTGAT
TTGCAGTGGATGACCGCCGGTCGTGGCATTGTTCACAGTGAAATGCCTGC
TACTGAAGGTAGCAACATTGGATTGCAACTATGGGTGAATCTTGCCGCGA
ACGATAAGATGACAAAGCCACAGTATCAAGGTAAGTTTTGTGATGCGTAT
ACCGATCACTTCGCGAGTTAGACGAGTGTTGCATTATTGATGCCTAACGT
TAATGCTTCTTGTTTCCATGTTGCAGAACTTTTGGCGGAGGATGTGCCCT
TGGCCAAGAGCGAAGACGGCTCGATCGAAGTGAAGGTCATTGCTGGTAAA
TGCTTTGATGTTGAAAGCAAGGTGTTCACGCAAACACCAACCCTGTATTG
GGATGTGAGAATGTTGAAGGGTGCTACTTTTGAGGAACGGATACCTGAAC
AATACAATACCTTCATCTACGTACTAGAGGGAAAAGTTACCACAGGGAGA
AAGAAGGTTGAGGGTGAGCATGGAGCTTGCATGGTATTCGGTCCCGGTGA
AGGCGTTCGGGTTGAATCTGAGGATGAAGCTAGATTTGTTGTCCTCGCAG
GACAGCCCTTAGACGAGCCAATTGTACAACACGGTCCATTTGTCATGAAC
ACCAGGGAGCAAATCATGCAAGCATTCCGGGACTATTCTGCTGGCAAGTT
TTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:451516..452719-

>Ggra1554.t1 ID=Ggra1554.t1|Name=Ggra1554.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000844_pilon:451516..452719- (Gracilaria gracilis GNS1m male)
ATGTGTCCTCGTCGAAGAAATACACAGCAGACCATACCGAAACACTCCGA
CCACAAGCGACGAACCCATCGCATCCTCTACCTGCTCTACCTCGTGCCGT
TTTCTATTCTGATATTGTCACTTTTGCGACCCAGTCTTTTGCAAACCGTA
TCGAAGCGATTCACGCATTCCACCGCCAACATGACTGCCTTTCGCGACGT
GAACAAAGTCGTCATTGCGCGCGAGCAATCAGAGGGTGTTGGTGCCCGCG
TAAGAAGAAGTATTGGATCAACCGAACTGCCCAATTTGGACCCTTTTCTG
CTGCTCGATGAATTCAATGTCACCAAACCGGCTGGCTTCCCAGACCATCC
CCATCGCGGAATGCAGACCGTCACCTACATGCTCGAGGGAGCCTTCCGTC
ATGAGGATAACAAGGGCCATGCCGGTACTATTGGAGTGGGTGATTTGCAG
TGGATGACCGCCGGTCGTGGCATTGTTCACAGTGAAATGCCTGCTACTGA
AGGTAGCAACATTGGATTGCAACTATGGGTGAATCTTGCCGCGAACGATA
AGATGACAAAGCCACAGTATCAAGAACTTTTGGCGGAGGATGTGCCCTTG
GCCAAGAGCGAAGACGGCTCGATCGAAGTGAAGGTCATTGCTGGTAAATG
CTTTGATGTTGAAAGCAAGGTGTTCACGCAAACACCAACCCTGTATTGGG
ATGTGAGAATGTTGAAGGGTGCTACTTTTGAGGAACGGATACCTGAACAA
TACAATACCTTCATCTACGTACTAGAGGGAAAAGTTACCACAGGGAGAAA
GAAGGTTGAGGGTGAGCATGGAGCTTGCATGGTATTCGGTCCCGGTGAAG
GCGTTCGGGTTGAATCTGAGGATGAAGCTAGATTTGTTGTCCTCGCAGGA
CAGCCCTTAGACGAGCCAATTGTACAACACGGTCCATTTGTCATGAACAC
CAGGGAGCAAATCATGCAAGCATTCCGGGACTATTCTGCTGGCAAGTTTT
AA
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