Ggra1552.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1552.t1
Unique NameGgra1552.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length72
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:436165..436517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1552Ggra1552Gracilaria gracilis GNS1m malegenetig00000844_pilon 436165..436517 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1Ggra1552.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 436165..436517 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1.start1Ggra1552.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 436165..436167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1.CDS1Ggra1552.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 436165..436213 +
Ggra1552.t1.CDS2Ggra1552.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 436282..436416 +
Ggra1552.t1.CDS3Ggra1552.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 436486..436517 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1.exon1Ggra1552.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 436165..436213 +
Ggra1552.t1.exon2Ggra1552.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 436282..436416 +
Ggra1552.t1.exon3Ggra1552.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 436486..436517 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1.intron1Ggra1552.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 436214..436281 +
Ggra1552.t1.intron2Ggra1552.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 436417..436485 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1552.t1.stop1Ggra1552.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 436515..436517 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1552.t1 ID=Ggra1552.t1|Name=Ggra1552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=72bp
MNHTPKTEASVPLQGTVRTRSAIRGTKSRSVQADVESFMPLREVVWEQHS
SIATLGSATYKPNHISCKQTP*
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spliced messenger RNA

>Ggra1552.t1 ID=Ggra1552.t1|Name=Ggra1552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=216bp|location=Sequence derived from alignment at tig00000844_pilon:436165..436517+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATCACACGCCCAAGACAGAAGCCTCGGTACCATTGCAAGGCACAGT
TCGTACCCGTTCAGCCATACGAGGCACAAAAAGCAGATCCGTTCAAGCTG
ATGTCGAATCCTTCATGCCCCTTCGAGAAGTAGTTTGGGAACAACATTCA
TCGATTGCAACTCTTGGATCAGCAACTTACAAGCCAAACCACATTTCTTG
CAAGCAAACACCGTAA
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protein sequence of Ggra1552.t1

>Ggra1552.t1 ID=Ggra1552.t1|Name=Ggra1552.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=72bp
MNHTPKTEASVPLQGTVRTRSAIRGTKSRSVQADVESFMPLREVVWEQHS
SIATLGSATYKPNHISCKQTP*
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mRNA from alignment at tig00000844_pilon:436165..436517+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1552.t1 ID=Ggra1552.t1|Name=Ggra1552.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=353bp|location=Sequence derived from alignment at tig00000844_pilon:436165..436517+ (Gracilaria gracilis GNS1m male)
ATGAATCACACGCCCAAGACAGAAGCCTCGGTACCATTGCAAGGCACAGG
TAAGTTTGCCGCTCTTCACCGCGCACCCGCAAAGCAATTCTGAGAGCAAA
CACAACATGTGGAGTAGTTCGTACCCGTTCAGCCATACGAGGCACAAAAA
GCAGATCCGTTCAAGCTGATGTCGAATCCTTCATGCCCCTTCGAGAAGTA
GTTTGGGAACAACATTCATCGATTGCAACTCTTGGATCAGCAACTTACAA
GCGTATGGGATCTTCAGCTGTCCAATTTTTTCTCCACTCTCACAAGTCTG
ACACCATTCCCTGTACCCTAGCAAACCACATTTCTTGCAAGCAAACACCG
TAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:436165..436517+

>Ggra1552.t1 ID=Ggra1552.t1|Name=Ggra1552.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=216bp|location=Sequence derived from alignment at tig00000844_pilon:436165..436517+ (Gracilaria gracilis GNS1m male)
ATGAATCACACGCCCAAGACAGAAGCCTCGGTACCATTGCAAGGCACAGT
TCGTACCCGTTCAGCCATACGAGGCACAAAAAGCAGATCCGTTCAAGCTG
ATGTCGAATCCTTCATGCCCCTTCGAGAAGTAGTTTGGGAACAACATTCA
TCGATTGCAACTCTTGGATCAGCAACTTACAAGCCAAACCACATTTCTTG
CAAGCAAACACCGTAA
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