Ggra1549.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1549.t1
Unique NameGgra1549.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length292
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:430322..431501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708326.1
PFAMsPkinase,Pkinase_Tyr
Max annot lvl2759|Eukaryota
KEGG koko:K00870
Evalue1.38e-91
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota
EC2.7.1.37
Descriptionprotein kinase activity
COG categoryKLT
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1549Ggra1549Gracilaria gracilis GNS1m malegenetig00000844_pilon 430322..431501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1Ggra1549.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 430322..431501 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1.stop1Ggra1549.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 430322..430324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1.CDS1Ggra1549.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 430322..430326 -
Ggra1549.t1.CDS2Ggra1549.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 430631..431501 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1.exon1Ggra1549.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 430322..430326 -
Ggra1549.t1.exon2Ggra1549.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 430631..431501 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1.intron1Ggra1549.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 430327..430630 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1549.t1.start1Ggra1549.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 431499..431501 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1549.t1 ID=Ggra1549.t1|Name=Ggra1549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=292bp
MQKFLELCKQFENTDYVIEEDSIKFDHKLGDGASGTTYLGHYQGEKVAIK
VYSASILKNDFNSVKNELEIMSKMRHKNIVQFKGMYLTKDPPGAALVTRF
AEKGELGHALYNSRLVRKKGLPMRFNIVLGLAEGLKYLHSNDVIHRDIKP
ANILLDDDYEPMLTDFGFSRFIDHDQNRHMTGETGSYRYMAPEVTSHSRY
TEKADTYSFALICNEIFMDERPFEYQISLVVARDVVVKNLRPSQKKIKNE
RLKDIIARCWDANPELRPDWDEVISELQAARKEIELKKSRA*
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spliced messenger RNA

>Ggra1549.t1 ID=Ggra1549.t1|Name=Ggra1549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=876bp|location=Sequence derived from alignment at tig00000844_pilon:430322..431501- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGTTCTTGGAGCTGTGCAAGCAGTTTGAGAATACCGACTATGT
GATTGAGGAGGACAGCATCAAGTTTGACCACAAGCTCGGCGATGGCGCCT
CTGGCACCACCTACCTGGGGCACTATCAGGGCGAGAAGGTTGCCATCAAG
GTGTACTCCGCCTCCATCCTCAAGAACGACTTCAACTCCGTCAAGAACGA
GCTGGAAATCATGTCCAAGATGCGCCACAAAAACATTGTGCAGTTCAAGG
GCATGTACTTGACAAAGGACCCGCCGGGCGCCGCCTTGGTCACCCGCTTC
GCCGAGAAGGGCGAGCTTGGTCACGCGCTTTATAACTCGCGGCTGGTGCG
CAAGAAAGGGCTGCCCATGCGCTTCAACATTGTGCTGGGGCTGGCTGAGG
GGCTCAAGTACTTGCACTCCAACGACGTCATTCACCGCGATATCAAGCCG
GCTAACATTCTTTTGGATGATGATTATGAACCCATGTTAACCGACTTTGG
ATTCAGCCGCTTTATCGACCATGACCAGAACAGGCACATGACCGGCGAGA
CCGGCTCGTACCGCTACATGGCCCCAGAGGTTACCAGTCACAGTCGCTAC
ACCGAGAAGGCCGATACGTACAGCTTCGCTCTCATTTGCAACGAGATTTT
CATGGATGAGCGCCCGTTTGAGTATCAAATCTCCTTGGTTGTAGCCCGCG
ACGTCGTCGTCAAGAATCTCAGGCCCTCTCAAAAGAAGATTAAGAACGAG
CGCCTCAAGGACATTATCGCACGTTGCTGGGATGCCAACCCAGAGTTACG
ACCAGACTGGGATGAGGTCATTTCCGAGTTACAAGCCGCCAGGAAAGAAA
TTGAACTCAAGAAGTCCAGAGCTTAA
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protein sequence of Ggra1549.t1

>Ggra1549.t1 ID=Ggra1549.t1|Name=Ggra1549.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=292bp
MQKFLELCKQFENTDYVIEEDSIKFDHKLGDGASGTTYLGHYQGEKVAIK
VYSASILKNDFNSVKNELEIMSKMRHKNIVQFKGMYLTKDPPGAALVTRF
AEKGELGHALYNSRLVRKKGLPMRFNIVLGLAEGLKYLHSNDVIHRDIKP
ANILLDDDYEPMLTDFGFSRFIDHDQNRHMTGETGSYRYMAPEVTSHSRY
TEKADTYSFALICNEIFMDERPFEYQISLVVARDVVVKNLRPSQKKIKNE
RLKDIIARCWDANPELRPDWDEVISELQAARKEIELKKSRA*
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mRNA from alignment at tig00000844_pilon:430322..431501-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1549.t1 ID=Ggra1549.t1|Name=Ggra1549.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1180bp|location=Sequence derived from alignment at tig00000844_pilon:430322..431501- (Gracilaria gracilis GNS1m male)
ATGCAGAAGTTCTTGGAGCTGTGCAAGCAGTTTGAGAATACCGACTATGT
GATTGAGGAGGACAGCATCAAGTTTGACCACAAGCTCGGCGATGGCGCCT
CTGGCACCACCTACCTGGGGCACTATCAGGGCGAGAAGGTTGCCATCAAG
GTGTACTCCGCCTCCATCCTCAAGAACGACTTCAACTCCGTCAAGAACGA
GCTGGAAATCATGTCCAAGATGCGCCACAAAAACATTGTGCAGTTCAAGG
GCATGTACTTGACAAAGGACCCGCCGGGCGCCGCCTTGGTCACCCGCTTC
GCCGAGAAGGGCGAGCTTGGTCACGCGCTTTATAACTCGCGGCTGGTGCG
CAAGAAAGGGCTGCCCATGCGCTTCAACATTGTGCTGGGGCTGGCTGAGG
GGCTCAAGTACTTGCACTCCAACGACGTCATTCACCGCGATATCAAGCCG
GCTAACATTCTTTTGGATGATGATTATGAACCCATGTTAACCGACTTTGG
ATTCAGCCGCTTTATCGACCATGACCAGAACAGGCACATGACCGGCGAGA
CCGGCTCGTACCGCTACATGGCCCCAGAGGTTACCAGTCACAGTCGCTAC
ACCGAGAAGGCCGATACGTACAGCTTCGCTCTCATTTGCAACGAGATTTT
CATGGATGAGCGCCCGTTTGAGTATCAAATCTCCTTGGTTGTAGCCCGCG
ACGTCGTCGTCAAGAATCTCAGGCCCTCTCAAAAGAAGATTAAGAACGAG
CGCCTCAAGGACATTATCGCACGTTGCTGGGATGCCAACCCAGAGTTACG
ACCAGACTGGGATGAGGTCATTTCCGAGTTACAAGCCGCCAGGAAAGAAA
TTGAACTCAAGAAGTCCAGAGGTACGTTCTCCTCTTTGTTTAAAAAGAAA
CATGGTGCTGCTAGTTCTTCTACTAGTGGTCAGTTGTGATTAGCGTGCAC
TTGAAACGCCGTACCTTGCGTTTGCGCACCCACGCTCTTTGTTTGAGTTC
ATGGTTGCCACAGGGCTGAATCATGTTTTGCATATCTGCAATCGGGTTTA
TATCGCTGTAGGCTGGTTGGACAACTATTAGTTTCATTTTGTCGCCTGCA
TAGTGTTTGTATTGCTTATATCTAATCGGCTCGCCACCGGCGGCACTTTC
TCGGCTGCTCTTACCGCCTTTGAAGCTTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:430322..431501-

>Ggra1549.t1 ID=Ggra1549.t1|Name=Ggra1549.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=876bp|location=Sequence derived from alignment at tig00000844_pilon:430322..431501- (Gracilaria gracilis GNS1m male)
ATGCAGAAGTTCTTGGAGCTGTGCAAGCAGTTTGAGAATACCGACTATGT
GATTGAGGAGGACAGCATCAAGTTTGACCACAAGCTCGGCGATGGCGCCT
CTGGCACCACCTACCTGGGGCACTATCAGGGCGAGAAGGTTGCCATCAAG
GTGTACTCCGCCTCCATCCTCAAGAACGACTTCAACTCCGTCAAGAACGA
GCTGGAAATCATGTCCAAGATGCGCCACAAAAACATTGTGCAGTTCAAGG
GCATGTACTTGACAAAGGACCCGCCGGGCGCCGCCTTGGTCACCCGCTTC
GCCGAGAAGGGCGAGCTTGGTCACGCGCTTTATAACTCGCGGCTGGTGCG
CAAGAAAGGGCTGCCCATGCGCTTCAACATTGTGCTGGGGCTGGCTGAGG
GGCTCAAGTACTTGCACTCCAACGACGTCATTCACCGCGATATCAAGCCG
GCTAACATTCTTTTGGATGATGATTATGAACCCATGTTAACCGACTTTGG
ATTCAGCCGCTTTATCGACCATGACCAGAACAGGCACATGACCGGCGAGA
CCGGCTCGTACCGCTACATGGCCCCAGAGGTTACCAGTCACAGTCGCTAC
ACCGAGAAGGCCGATACGTACAGCTTCGCTCTCATTTGCAACGAGATTTT
CATGGATGAGCGCCCGTTTGAGTATCAAATCTCCTTGGTTGTAGCCCGCG
ACGTCGTCGTCAAGAATCTCAGGCCCTCTCAAAAGAAGATTAAGAACGAG
CGCCTCAAGGACATTATCGCACGTTGCTGGGATGCCAACCCAGAGTTACG
ACCAGACTGGGATGAGGTCATTTCCGAGTTACAAGCCGCCAGGAAAGAAA
TTGAACTCAAGAAGTCCAGAGCTTAA
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