Ggra1545.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1545.t1
Unique NameGgra1545.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:419950..421086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1545Ggra1545Gracilaria gracilis GNS1m malegenetig00000844_pilon 419950..421086 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1545.t1.stop1Ggra1545.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 419950..419952 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1545.t1.CDS1Ggra1545.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 419950..421086 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1545.t1.exon1Ggra1545.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 419950..421086 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1545.t1.start1Ggra1545.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 421084..421086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1545.t1Ggra1545.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 419950..421086 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1545.t1 ID=Ggra1545.t1|Name=Ggra1545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MSVATKGVQKRPKSSRGAHSIQSASRTPPKHATPSAKRRPARNTNKSPPT
TPMTPEDADVRDPKDLRDDVRLTTYAPPQKGTLPSVSPVLTGSYGTLASA
PPPAPNRTIPELMTTSYSRHKPQPGFTAPQRPSSYGAHNDGFAPAPANAQ
QPPALPTPSSIAAIPPPYSAGGMPLSTTPSHLMSSQLGKNQSTAPGAIPL
PYGSPDGHTLPAPSTLLGDKRLQSGGGRPPVIPGSLPKHFLGYQAPKEPA
SGPKAPFDLCVPSSPVTSGSKSLMFGNKMPKIPITMELDDSDDEGPSKII
GAQDAFVRTGNPFGGFAPPARCSPLPVSSPIVCPGISPMPLSPLAPFSPL
PHDSPANHAPNPVHPPVHTPTVRPNTNW*
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spliced messenger RNA

>Ggra1545.t1 ID=Ggra1545.t1|Name=Ggra1545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000844_pilon:419950..421086- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTTGCCACAAAGGGCGTGCAAAAGAGACCGAAGAGCAGTCGCGG
TGCTCACTCCATTCAAAGCGCCTCGCGCACCCCTCCAAAGCATGCCACAC
CTTCTGCGAAGCGTCGCCCCGCACGTAATACCAACAAGAGCCCTCCGACA
ACGCCTATGACACCCGAGGACGCCGACGTCAGGGACCCAAAAGATTTGCG
TGATGACGTGCGACTGACCACGTACGCACCTCCCCAAAAGGGAACGCTTC
CGTCTGTGTCACCGGTGTTGACAGGTTCTTACGGTACTCTCGCTAGTGCG
CCACCACCCGCACCGAACCGCACCATTCCGGAACTGATGACTACCTCTTA
TTCGCGCCATAAGCCTCAACCCGGCTTCACAGCGCCACAGCGACCGAGCT
CCTACGGGGCACATAATGACGGCTTTGCGCCTGCGCCTGCAAACGCGCAA
CAACCACCAGCCCTTCCGACCCCGTCGTCAATCGCTGCAATTCCACCACC
GTATAGCGCGGGCGGTATGCCACTCTCGACAACGCCCTCGCATCTAATGT
CGTCTCAGCTTGGCAAAAATCAGTCAACGGCTCCTGGTGCAATCCCCCTT
CCGTACGGGAGTCCTGACGGTCACACGCTTCCGGCACCTTCTACATTACT
AGGTGACAAGCGTCTGCAGAGTGGAGGTGGACGTCCGCCTGTTATTCCTG
GCTCTTTGCCCAAGCACTTCCTTGGATATCAAGCACCAAAGGAGCCTGCG
TCCGGGCCGAAAGCGCCGTTTGATCTTTGCGTGCCGTCATCTCCCGTGAC
TTCTGGCTCAAAGTCATTGATGTTTGGTAACAAGATGCCAAAGATTCCAA
TCACCATGGAGCTGGACGACAGTGATGACGAGGGACCGTCGAAGATCATT
GGGGCTCAAGACGCGTTTGTAAGAACTGGCAACCCGTTTGGTGGGTTTGC
ACCACCGGCAAGATGTTCGCCTCTACCTGTGAGCTCGCCCATTGTGTGTC
CTGGGATTTCTCCAATGCCTTTGAGCCCGTTGGCTCCTTTCTCTCCGCTA
CCTCACGACTCTCCTGCAAACCATGCTCCCAATCCTGTACATCCTCCCGT
ACACACCCCTACTGTTAGACCGAATACGAATTGGTAG
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protein sequence of Ggra1545.t1

>Ggra1545.t1 ID=Ggra1545.t1|Name=Ggra1545.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MSVATKGVQKRPKSSRGAHSIQSASRTPPKHATPSAKRRPARNTNKSPPT
TPMTPEDADVRDPKDLRDDVRLTTYAPPQKGTLPSVSPVLTGSYGTLASA
PPPAPNRTIPELMTTSYSRHKPQPGFTAPQRPSSYGAHNDGFAPAPANAQ
QPPALPTPSSIAAIPPPYSAGGMPLSTTPSHLMSSQLGKNQSTAPGAIPL
PYGSPDGHTLPAPSTLLGDKRLQSGGGRPPVIPGSLPKHFLGYQAPKEPA
SGPKAPFDLCVPSSPVTSGSKSLMFGNKMPKIPITMELDDSDDEGPSKII
GAQDAFVRTGNPFGGFAPPARCSPLPVSSPIVCPGISPMPLSPLAPFSPL
PHDSPANHAPNPVHPPVHTPTVRPNTNW*
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mRNA from alignment at tig00000844_pilon:419950..421086-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1545.t1 ID=Ggra1545.t1|Name=Ggra1545.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000844_pilon:419950..421086- (Gracilaria gracilis GNS1m male)
ATGTCCGTTGCCACAAAGGGCGTGCAAAAGAGACCGAAGAGCAGTCGCGG
TGCTCACTCCATTCAAAGCGCCTCGCGCACCCCTCCAAAGCATGCCACAC
CTTCTGCGAAGCGTCGCCCCGCACGTAATACCAACAAGAGCCCTCCGACA
ACGCCTATGACACCCGAGGACGCCGACGTCAGGGACCCAAAAGATTTGCG
TGATGACGTGCGACTGACCACGTACGCACCTCCCCAAAAGGGAACGCTTC
CGTCTGTGTCACCGGTGTTGACAGGTTCTTACGGTACTCTCGCTAGTGCG
CCACCACCCGCACCGAACCGCACCATTCCGGAACTGATGACTACCTCTTA
TTCGCGCCATAAGCCTCAACCCGGCTTCACAGCGCCACAGCGACCGAGCT
CCTACGGGGCACATAATGACGGCTTTGCGCCTGCGCCTGCAAACGCGCAA
CAACCACCAGCCCTTCCGACCCCGTCGTCAATCGCTGCAATTCCACCACC
GTATAGCGCGGGCGGTATGCCACTCTCGACAACGCCCTCGCATCTAATGT
CGTCTCAGCTTGGCAAAAATCAGTCAACGGCTCCTGGTGCAATCCCCCTT
CCGTACGGGAGTCCTGACGGTCACACGCTTCCGGCACCTTCTACATTACT
AGGTGACAAGCGTCTGCAGAGTGGAGGTGGACGTCCGCCTGTTATTCCTG
GCTCTTTGCCCAAGCACTTCCTTGGATATCAAGCACCAAAGGAGCCTGCG
TCCGGGCCGAAAGCGCCGTTTGATCTTTGCGTGCCGTCATCTCCCGTGAC
TTCTGGCTCAAAGTCATTGATGTTTGGTAACAAGATGCCAAAGATTCCAA
TCACCATGGAGCTGGACGACAGTGATGACGAGGGACCGTCGAAGATCATT
GGGGCTCAAGACGCGTTTGTAAGAACTGGCAACCCGTTTGGTGGGTTTGC
ACCACCGGCAAGATGTTCGCCTCTACCTGTGAGCTCGCCCATTGTGTGTC
CTGGGATTTCTCCAATGCCTTTGAGCCCGTTGGCTCCTTTCTCTCCGCTA
CCTCACGACTCTCCTGCAAACCATGCTCCCAATCCTGTACATCCTCCCGT
ACACACCCCTACTGTTAGACCGAATACGAATTGGTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:419950..421086-

>Ggra1545.t1 ID=Ggra1545.t1|Name=Ggra1545.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000844_pilon:419950..421086- (Gracilaria gracilis GNS1m male)
ATGTCCGTTGCCACAAAGGGCGTGCAAAAGAGACCGAAGAGCAGTCGCGG
TGCTCACTCCATTCAAAGCGCCTCGCGCACCCCTCCAAAGCATGCCACAC
CTTCTGCGAAGCGTCGCCCCGCACGTAATACCAACAAGAGCCCTCCGACA
ACGCCTATGACACCCGAGGACGCCGACGTCAGGGACCCAAAAGATTTGCG
TGATGACGTGCGACTGACCACGTACGCACCTCCCCAAAAGGGAACGCTTC
CGTCTGTGTCACCGGTGTTGACAGGTTCTTACGGTACTCTCGCTAGTGCG
CCACCACCCGCACCGAACCGCACCATTCCGGAACTGATGACTACCTCTTA
TTCGCGCCATAAGCCTCAACCCGGCTTCACAGCGCCACAGCGACCGAGCT
CCTACGGGGCACATAATGACGGCTTTGCGCCTGCGCCTGCAAACGCGCAA
CAACCACCAGCCCTTCCGACCCCGTCGTCAATCGCTGCAATTCCACCACC
GTATAGCGCGGGCGGTATGCCACTCTCGACAACGCCCTCGCATCTAATGT
CGTCTCAGCTTGGCAAAAATCAGTCAACGGCTCCTGGTGCAATCCCCCTT
CCGTACGGGAGTCCTGACGGTCACACGCTTCCGGCACCTTCTACATTACT
AGGTGACAAGCGTCTGCAGAGTGGAGGTGGACGTCCGCCTGTTATTCCTG
GCTCTTTGCCCAAGCACTTCCTTGGATATCAAGCACCAAAGGAGCCTGCG
TCCGGGCCGAAAGCGCCGTTTGATCTTTGCGTGCCGTCATCTCCCGTGAC
TTCTGGCTCAAAGTCATTGATGTTTGGTAACAAGATGCCAAAGATTCCAA
TCACCATGGAGCTGGACGACAGTGATGACGAGGGACCGTCGAAGATCATT
GGGGCTCAAGACGCGTTTGTAAGAACTGGCAACCCGTTTGGTGGGTTTGC
ACCACCGGCAAGATGTTCGCCTCTACCTGTGAGCTCGCCCATTGTGTGTC
CTGGGATTTCTCCAATGCCTTTGAGCCCGTTGGCTCCTTTCTCTCCGCTA
CCTCACGACTCTCCTGCAAACCATGCTCCCAATCCTGTACATCCTCCCGT
ACACACCCCTACTGTTAGACCGAATACGAATTGGTAG
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