Ggra1543.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1543.t1
Unique NameGgra1543.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length108
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:414903..415226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1543Ggra1543Gracilaria gracilis GNS1m malegenetig00000844_pilon 414903..415226 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1543.t1.start1Ggra1543.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 414903..414905 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1543.t1.CDS1Ggra1543.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 414903..415226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1543.t1.exon1Ggra1543.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 414903..415226 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1543.t1.stop1Ggra1543.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 415224..415226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1543.t1Ggra1543.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 414903..415226 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1543.t1 ID=Ggra1543.t1|Name=Ggra1543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=108bp
MDNDQEFEPTGMANFFQRYHEARASKSPPTTPTASAPKPPSSPPTPSKPK
TAQSTWTKVFMPLGRPATSANRYDLSPGQTSKPGHSVSELHAKGSGISLD
AKNDDDM*
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spliced messenger RNA

>Ggra1543.t1 ID=Ggra1543.t1|Name=Ggra1543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000844_pilon:414903..415226+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGATCAGGAGTTCGAGCCCACGGGCATGGCAAACTTCTTCCA
GCGCTACCACGAAGCGCGTGCGTCGAAATCGCCACCAACCACCCCGACCG
CATCGGCGCCCAAGCCGCCGTCCTCCCCTCCGACACCGTCAAAGCCGAAG
ACGGCGCAGTCCACCTGGACTAAGGTGTTCATGCCGCTGGGTCGCCCGGC
CACCTCTGCCAACCGCTACGATCTGTCGCCCGGTCAGACCTCCAAGCCGG
GGCACAGCGTCAGTGAGCTGCACGCAAAGGGCAGTGGAATCTCTCTGGAC
GCCAAGAACGACGACGACATGTAA
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protein sequence of Ggra1543.t1

>Ggra1543.t1 ID=Ggra1543.t1|Name=Ggra1543.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=108bp
MDNDQEFEPTGMANFFQRYHEARASKSPPTTPTASAPKPPSSPPTPSKPK
TAQSTWTKVFMPLGRPATSANRYDLSPGQTSKPGHSVSELHAKGSGISLD
AKNDDDM*
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mRNA from alignment at tig00000844_pilon:414903..415226+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1543.t1 ID=Ggra1543.t1|Name=Ggra1543.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=324bp|location=Sequence derived from alignment at tig00000844_pilon:414903..415226+ (Gracilaria gracilis GNS1m male)
ATGGACAACGATCAGGAGTTCGAGCCCACGGGCATGGCAAACTTCTTCCA
GCGCTACCACGAAGCGCGTGCGTCGAAATCGCCACCAACCACCCCGACCG
CATCGGCGCCCAAGCCGCCGTCCTCCCCTCCGACACCGTCAAAGCCGAAG
ACGGCGCAGTCCACCTGGACTAAGGTGTTCATGCCGCTGGGTCGCCCGGC
CACCTCTGCCAACCGCTACGATCTGTCGCCCGGTCAGACCTCCAAGCCGG
GGCACAGCGTCAGTGAGCTGCACGCAAAGGGCAGTGGAATCTCTCTGGAC
GCCAAGAACGACGACGACATGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:414903..415226+

>Ggra1543.t1 ID=Ggra1543.t1|Name=Ggra1543.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=324bp|location=Sequence derived from alignment at tig00000844_pilon:414903..415226+ (Gracilaria gracilis GNS1m male)
ATGGACAACGATCAGGAGTTCGAGCCCACGGGCATGGCAAACTTCTTCCA
GCGCTACCACGAAGCGCGTGCGTCGAAATCGCCACCAACCACCCCGACCG
CATCGGCGCCCAAGCCGCCGTCCTCCCCTCCGACACCGTCAAAGCCGAAG
ACGGCGCAGTCCACCTGGACTAAGGTGTTCATGCCGCTGGGTCGCCCGGC
CACCTCTGCCAACCGCTACGATCTGTCGCCCGGTCAGACCTCCAAGCCGG
GGCACAGCGTCAGTGAGCTGCACGCAAAGGGCAGTGGAATCTCTCTGGAC
GCCAAGAACGACGACGACATGTAA
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