Ggra1542.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1542.t1
Unique NameGgra1542.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:413364..414047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1128427.KB904821_gene2143
PFAMsHis_Phos_1
Max annot lvl1117|Cyanobacteria
Evalue3.41e-30
EggNOG OGsCOG0406@1|root,COG0406@2|Bacteria,1G0NK@1117|Cyanobacteria,1H7MJ@1150|Oscillatoriales
Descriptionphosphoglycerate mutase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1542Ggra1542Gracilaria gracilis GNS1m malegenetig00000844_pilon 413364..414047 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1542.t1.stop1Ggra1542.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 413364..413366 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1542.t1.CDS1Ggra1542.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 413364..414047 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1542.t1.exon1Ggra1542.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 413364..414047 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1542.t1.start1Ggra1542.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 414045..414047 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1542.t1Ggra1542.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 413364..414047 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1542.t1 ID=Ggra1542.t1|Name=Ggra1542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MAPLIYLARHGERQDFVDPNWRKTADRPDDAPLTATGQLQATKLGRLLRD
KNITSLYTSSFLRCIQTATAVQSQLSDAPPTLNVEPGLCEWLNAWWYSAS
EKGPVWLQPDAVFERFPRVNRQYDPLFGYDWNFRGFPEDQAHLSHRCLQT
VERVVSNHGDKEGNILLVGHGSSIECLRQTLVANITGPPLHYCALTECIP
VQASSQPHRYTLGAHNNDIGFYKPGGR*
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spliced messenger RNA

>Ggra1542.t1 ID=Ggra1542.t1|Name=Ggra1542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000844_pilon:413364..414047- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCTCTCATCTACCTCGCGCGCCATGGCGAGCGTCAAGATTTTGT
GGACCCAAACTGGAGAAAAACCGCCGACCGACCCGACGATGCGCCGCTCA
CCGCAACAGGGCAGCTGCAAGCCACCAAACTCGGCCGACTGCTGCGCGAC
AAGAACATCACCTCTCTGTACACCAGCTCGTTTTTACGTTGCATTCAGAC
CGCAACCGCCGTACAAAGCCAGCTTTCGGACGCGCCGCCGACGCTCAACG
TGGAACCAGGTCTGTGTGAGTGGCTCAACGCGTGGTGGTATTCTGCGTCG
GAAAAGGGGCCCGTCTGGTTACAGCCTGACGCCGTGTTCGAACGATTCCC
GCGCGTCAACCGTCAGTATGACCCCTTGTTCGGCTATGATTGGAATTTTC
GAGGCTTTCCGGAGGATCAGGCTCATTTGAGTCACCGTTGTTTGCAGACC
GTTGAGCGCGTTGTATCGAATCACGGCGACAAAGAAGGCAACATTCTTTT
GGTGGGACACGGGTCCAGCATCGAATGTCTTAGACAGACGCTTGTTGCCA
ATATTACGGGCCCGCCGTTGCACTACTGCGCGCTGACGGAGTGCATACCG
GTGCAAGCTTCATCACAACCGCATCGTTACACTCTGGGCGCTCATAACAA
CGACATCGGCTTCTACAAGCCGGGCGGCAGATAA
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protein sequence of Ggra1542.t1

>Ggra1542.t1 ID=Ggra1542.t1|Name=Ggra1542.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MAPLIYLARHGERQDFVDPNWRKTADRPDDAPLTATGQLQATKLGRLLRD
KNITSLYTSSFLRCIQTATAVQSQLSDAPPTLNVEPGLCEWLNAWWYSAS
EKGPVWLQPDAVFERFPRVNRQYDPLFGYDWNFRGFPEDQAHLSHRCLQT
VERVVSNHGDKEGNILLVGHGSSIECLRQTLVANITGPPLHYCALTECIP
VQASSQPHRYTLGAHNNDIGFYKPGGR*
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mRNA from alignment at tig00000844_pilon:413364..414047-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1542.t1 ID=Ggra1542.t1|Name=Ggra1542.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000844_pilon:413364..414047- (Gracilaria gracilis GNS1m male)
ATGGCGCCTCTCATCTACCTCGCGCGCCATGGCGAGCGTCAAGATTTTGT
GGACCCAAACTGGAGAAAAACCGCCGACCGACCCGACGATGCGCCGCTCA
CCGCAACAGGGCAGCTGCAAGCCACCAAACTCGGCCGACTGCTGCGCGAC
AAGAACATCACCTCTCTGTACACCAGCTCGTTTTTACGTTGCATTCAGAC
CGCAACCGCCGTACAAAGCCAGCTTTCGGACGCGCCGCCGACGCTCAACG
TGGAACCAGGTCTGTGTGAGTGGCTCAACGCGTGGTGGTATTCTGCGTCG
GAAAAGGGGCCCGTCTGGTTACAGCCTGACGCCGTGTTCGAACGATTCCC
GCGCGTCAACCGTCAGTATGACCCCTTGTTCGGCTATGATTGGAATTTTC
GAGGCTTTCCGGAGGATCAGGCTCATTTGAGTCACCGTTGTTTGCAGACC
GTTGAGCGCGTTGTATCGAATCACGGCGACAAAGAAGGCAACATTCTTTT
GGTGGGACACGGGTCCAGCATCGAATGTCTTAGACAGACGCTTGTTGCCA
ATATTACGGGCCCGCCGTTGCACTACTGCGCGCTGACGGAGTGCATACCG
GTGCAAGCTTCATCACAACCGCATCGTTACACTCTGGGCGCTCATAACAA
CGACATCGGCTTCTACAAGCCGGGCGGCAGATAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:413364..414047-

>Ggra1542.t1 ID=Ggra1542.t1|Name=Ggra1542.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000844_pilon:413364..414047- (Gracilaria gracilis GNS1m male)
ATGGCGCCTCTCATCTACCTCGCGCGCCATGGCGAGCGTCAAGATTTTGT
GGACCCAAACTGGAGAAAAACCGCCGACCGACCCGACGATGCGCCGCTCA
CCGCAACAGGGCAGCTGCAAGCCACCAAACTCGGCCGACTGCTGCGCGAC
AAGAACATCACCTCTCTGTACACCAGCTCGTTTTTACGTTGCATTCAGAC
CGCAACCGCCGTACAAAGCCAGCTTTCGGACGCGCCGCCGACGCTCAACG
TGGAACCAGGTCTGTGTGAGTGGCTCAACGCGTGGTGGTATTCTGCGTCG
GAAAAGGGGCCCGTCTGGTTACAGCCTGACGCCGTGTTCGAACGATTCCC
GCGCGTCAACCGTCAGTATGACCCCTTGTTCGGCTATGATTGGAATTTTC
GAGGCTTTCCGGAGGATCAGGCTCATTTGAGTCACCGTTGTTTGCAGACC
GTTGAGCGCGTTGTATCGAATCACGGCGACAAAGAAGGCAACATTCTTTT
GGTGGGACACGGGTCCAGCATCGAATGTCTTAGACAGACGCTTGTTGCCA
ATATTACGGGCCCGCCGTTGCACTACTGCGCGCTGACGGAGTGCATACCG
GTGCAAGCTTCATCACAACCGCATCGTTACACTCTGGGCGCTCATAACAA
CGACATCGGCTTCTACAAGCCGGGCGGCAGATAA
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