Ggra1541.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1541.t1
Unique NameGgra1541.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length527
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:411343..412923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704295.1
Preferred nameMCX1
PFAMsAAA_2,ClpB_D2-small
Max annot lvl2759|Eukaryota
KEGG koko:K03544,ko:K03667,ko:K19852
KEGG Pathwayko04112,map04112
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004176,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006457,GO:0006508,GO:0006605,GO:0006626,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009893,GO:0009987,GO:0010604,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017038,GO:0017076,GO:0017111,GO:0019222,GO:0019538,GO:0030150,GO:0030163,GO:0030554,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0042026,GO:0042623,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0055085,GO:0060255,GO:0065002,GO:0065007,GO:0070011,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0097159,GO:0097367,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1904285,GO:1904287,GO:1990542
Evalue1.26e-141
EggNOG OGsCOG1219@1|root,KOG0745@2759|Eukaryota
EC2.7.11.1
Descriptionunfolded protein binding
COG categoryO
BRITEko00000,ko00001,ko01000,ko01001,ko03110,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1541Ggra1541Gracilaria gracilis GNS1m malegenetig00000844_pilon 411343..412923 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1541.t1.stop1Ggra1541.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 411343..411345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1541.t1.CDS1Ggra1541.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 411343..412923 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1541.t1.exon1Ggra1541.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 411343..412923 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1541.t1.start1Ggra1541.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 412921..412923 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1541.t1Ggra1541.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 411343..412923 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1541.t1 ID=Ggra1541.t1|Name=Ggra1541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=527bp
MSPRYARTLSTFSRNGPPSTTATLGTILSATSHRPSTPKHPPSLEKVVRA
IPRPSAIHAGLNEYVIGQQSAKKVLSVAVYNHYKRVAAKEAMTAAAMLRA
SQDAEQDAVAAARHAVVRTEEHKDDKWYGPPKDRIESDILAVTATRADGQ
LPTQLLSRDTPTTLPEIFQPTRNALAVDTTANAADQVELEKSNILLIGNT
GVGKTHLAKTLARRINVPFVIADATSLTQSGYVGDDVESILYKLLMAANF
NVSLAERGVVFIDEIDKCAKKSESVSITRDVSGVGVQQALLKILEGSVVG
VPERGGGRKNPRGDVIHVDTTNILFICGGAFPGLDRIVADRMAASSIGFG
AHVRAEGKEGPIDSSILDHIESEDLSSFGLIGELIGRLPIVVNLHPLDLE
QLIQILTQPKNAIVRQFRELLKMNNAQLHISDPALGIIARKALEKGTGAR
GLRSLMERTLNEAMYEVPDLEGEHAAIVIEEDPNKVGDVYTFVLRGKGAL
DRYLAESRESSDMDPALKQADAAFSS*
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spliced messenger RNA

>Ggra1541.t1 ID=Ggra1541.t1|Name=Ggra1541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000844_pilon:411343..412923- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCGCGATATGCTCGAACTCTGTCCACCTTCTCGCGCAATGGGCC
TCCTTCTACCACCGCTACACTGGGTACCATTCTGTCTGCCACCTCGCATC
GTCCCTCCACGCCAAAGCATCCGCCCAGTTTAGAGAAGGTTGTGCGCGCC
ATTCCGCGTCCGTCCGCAATTCACGCCGGTTTGAACGAGTATGTCATTGG
TCAACAGAGTGCCAAAAAGGTCTTGTCCGTAGCCGTTTACAATCATTACA
AGCGCGTCGCAGCAAAGGAAGCAATGACTGCTGCTGCCATGTTACGCGCC
TCACAAGATGCCGAACAGGATGCCGTCGCAGCCGCTCGTCATGCCGTCGT
CAGAACAGAGGAACACAAGGATGACAAGTGGTATGGTCCACCAAAGGACC
GCATTGAGTCTGACATTCTTGCTGTCACCGCTACCAGGGCTGATGGTCAA
CTTCCCACCCAACTCTTGTCCAGAGATACGCCAACCACACTGCCCGAAAT
CTTCCAGCCCACCAGAAATGCTCTGGCTGTTGATACCACTGCCAATGCTG
CCGACCAGGTTGAACTGGAGAAGAGCAATATTCTACTCATCGGAAACACC
GGTGTGGGAAAAACACATCTTGCCAAGACGCTTGCGCGCCGAATTAATGT
TCCGTTCGTTATAGCTGATGCCACGTCGCTCACGCAAAGCGGTTACGTTG
GTGATGACGTGGAGTCAATTTTGTACAAGTTACTCATGGCCGCCAATTTC
AACGTGTCTCTCGCTGAAAGAGGCGTTGTCTTCATCGATGAAATCGACAA
GTGTGCCAAGAAAAGCGAGAGTGTCAGCATAACGCGCGATGTATCCGGTG
TAGGCGTACAGCAGGCTCTGCTCAAAATCTTGGAAGGGAGCGTGGTGGGA
GTGCCGGAACGCGGTGGTGGCAGGAAGAATCCTCGAGGTGATGTCATTCA
TGTCGATACTACTAACATCCTCTTCATTTGCGGCGGTGCTTTTCCGGGCT
TGGATCGAATTGTCGCCGACCGCATGGCCGCCTCTAGCATTGGGTTTGGG
GCACATGTTCGGGCCGAGGGGAAAGAGGGTCCGATTGACTCATCCATTCT
GGACCATATTGAAAGTGAAGATCTTTCCAGCTTCGGGTTGATTGGCGAGC
TCATTGGTCGACTACCCATCGTCGTCAATCTTCACCCGCTCGATTTGGAG
CAATTAATCCAGATTTTGACGCAGCCGAAGAATGCAATTGTTCGACAGTT
CCGAGAGTTGCTCAAGATGAACAATGCCCAGCTTCATATATCCGACCCCG
CCTTAGGCATTATAGCTCGTAAGGCACTTGAGAAAGGAACAGGAGCACGC
GGACTGAGATCGCTTATGGAGCGCACACTCAATGAGGCCATGTACGAAGT
TCCAGACTTGGAAGGCGAGCATGCTGCCATTGTAATCGAAGAAGACCCTA
ACAAGGTCGGGGATGTGTACACCTTTGTGCTGCGTGGGAAAGGTGCGCTT
GATCGCTACCTGGCCGAATCTAGAGAGTCGAGCGACATGGATCCTGCTCT
CAAGCAAGCTGATGCTGCCTTCAGCAGCTAA
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protein sequence of Ggra1541.t1

>Ggra1541.t1 ID=Ggra1541.t1|Name=Ggra1541.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=527bp
MSPRYARTLSTFSRNGPPSTTATLGTILSATSHRPSTPKHPPSLEKVVRA
IPRPSAIHAGLNEYVIGQQSAKKVLSVAVYNHYKRVAAKEAMTAAAMLRA
SQDAEQDAVAAARHAVVRTEEHKDDKWYGPPKDRIESDILAVTATRADGQ
LPTQLLSRDTPTTLPEIFQPTRNALAVDTTANAADQVELEKSNILLIGNT
GVGKTHLAKTLARRINVPFVIADATSLTQSGYVGDDVESILYKLLMAANF
NVSLAERGVVFIDEIDKCAKKSESVSITRDVSGVGVQQALLKILEGSVVG
VPERGGGRKNPRGDVIHVDTTNILFICGGAFPGLDRIVADRMAASSIGFG
AHVRAEGKEGPIDSSILDHIESEDLSSFGLIGELIGRLPIVVNLHPLDLE
QLIQILTQPKNAIVRQFRELLKMNNAQLHISDPALGIIARKALEKGTGAR
GLRSLMERTLNEAMYEVPDLEGEHAAIVIEEDPNKVGDVYTFVLRGKGAL
DRYLAESRESSDMDPALKQADAAFSS*
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mRNA from alignment at tig00000844_pilon:411343..412923-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1541.t1 ID=Ggra1541.t1|Name=Ggra1541.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000844_pilon:411343..412923- (Gracilaria gracilis GNS1m male)
ATGTCTCCGCGATATGCTCGAACTCTGTCCACCTTCTCGCGCAATGGGCC
TCCTTCTACCACCGCTACACTGGGTACCATTCTGTCTGCCACCTCGCATC
GTCCCTCCACGCCAAAGCATCCGCCCAGTTTAGAGAAGGTTGTGCGCGCC
ATTCCGCGTCCGTCCGCAATTCACGCCGGTTTGAACGAGTATGTCATTGG
TCAACAGAGTGCCAAAAAGGTCTTGTCCGTAGCCGTTTACAATCATTACA
AGCGCGTCGCAGCAAAGGAAGCAATGACTGCTGCTGCCATGTTACGCGCC
TCACAAGATGCCGAACAGGATGCCGTCGCAGCCGCTCGTCATGCCGTCGT
CAGAACAGAGGAACACAAGGATGACAAGTGGTATGGTCCACCAAAGGACC
GCATTGAGTCTGACATTCTTGCTGTCACCGCTACCAGGGCTGATGGTCAA
CTTCCCACCCAACTCTTGTCCAGAGATACGCCAACCACACTGCCCGAAAT
CTTCCAGCCCACCAGAAATGCTCTGGCTGTTGATACCACTGCCAATGCTG
CCGACCAGGTTGAACTGGAGAAGAGCAATATTCTACTCATCGGAAACACC
GGTGTGGGAAAAACACATCTTGCCAAGACGCTTGCGCGCCGAATTAATGT
TCCGTTCGTTATAGCTGATGCCACGTCGCTCACGCAAAGCGGTTACGTTG
GTGATGACGTGGAGTCAATTTTGTACAAGTTACTCATGGCCGCCAATTTC
AACGTGTCTCTCGCTGAAAGAGGCGTTGTCTTCATCGATGAAATCGACAA
GTGTGCCAAGAAAAGCGAGAGTGTCAGCATAACGCGCGATGTATCCGGTG
TAGGCGTACAGCAGGCTCTGCTCAAAATCTTGGAAGGGAGCGTGGTGGGA
GTGCCGGAACGCGGTGGTGGCAGGAAGAATCCTCGAGGTGATGTCATTCA
TGTCGATACTACTAACATCCTCTTCATTTGCGGCGGTGCTTTTCCGGGCT
TGGATCGAATTGTCGCCGACCGCATGGCCGCCTCTAGCATTGGGTTTGGG
GCACATGTTCGGGCCGAGGGGAAAGAGGGTCCGATTGACTCATCCATTCT
GGACCATATTGAAAGTGAAGATCTTTCCAGCTTCGGGTTGATTGGCGAGC
TCATTGGTCGACTACCCATCGTCGTCAATCTTCACCCGCTCGATTTGGAG
CAATTAATCCAGATTTTGACGCAGCCGAAGAATGCAATTGTTCGACAGTT
CCGAGAGTTGCTCAAGATGAACAATGCCCAGCTTCATATATCCGACCCCG
CCTTAGGCATTATAGCTCGTAAGGCACTTGAGAAAGGAACAGGAGCACGC
GGACTGAGATCGCTTATGGAGCGCACACTCAATGAGGCCATGTACGAAGT
TCCAGACTTGGAAGGCGAGCATGCTGCCATTGTAATCGAAGAAGACCCTA
ACAAGGTCGGGGATGTGTACACCTTTGTGCTGCGTGGGAAAGGTGCGCTT
GATCGCTACCTGGCCGAATCTAGAGAGTCGAGCGACATGGATCCTGCTCT
CAAGCAAGCTGATGCTGCCTTCAGCAGCTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:411343..412923-

>Ggra1541.t1 ID=Ggra1541.t1|Name=Ggra1541.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1581bp|location=Sequence derived from alignment at tig00000844_pilon:411343..412923- (Gracilaria gracilis GNS1m male)
ATGTCTCCGCGATATGCTCGAACTCTGTCCACCTTCTCGCGCAATGGGCC
TCCTTCTACCACCGCTACACTGGGTACCATTCTGTCTGCCACCTCGCATC
GTCCCTCCACGCCAAAGCATCCGCCCAGTTTAGAGAAGGTTGTGCGCGCC
ATTCCGCGTCCGTCCGCAATTCACGCCGGTTTGAACGAGTATGTCATTGG
TCAACAGAGTGCCAAAAAGGTCTTGTCCGTAGCCGTTTACAATCATTACA
AGCGCGTCGCAGCAAAGGAAGCAATGACTGCTGCTGCCATGTTACGCGCC
TCACAAGATGCCGAACAGGATGCCGTCGCAGCCGCTCGTCATGCCGTCGT
CAGAACAGAGGAACACAAGGATGACAAGTGGTATGGTCCACCAAAGGACC
GCATTGAGTCTGACATTCTTGCTGTCACCGCTACCAGGGCTGATGGTCAA
CTTCCCACCCAACTCTTGTCCAGAGATACGCCAACCACACTGCCCGAAAT
CTTCCAGCCCACCAGAAATGCTCTGGCTGTTGATACCACTGCCAATGCTG
CCGACCAGGTTGAACTGGAGAAGAGCAATATTCTACTCATCGGAAACACC
GGTGTGGGAAAAACACATCTTGCCAAGACGCTTGCGCGCCGAATTAATGT
TCCGTTCGTTATAGCTGATGCCACGTCGCTCACGCAAAGCGGTTACGTTG
GTGATGACGTGGAGTCAATTTTGTACAAGTTACTCATGGCCGCCAATTTC
AACGTGTCTCTCGCTGAAAGAGGCGTTGTCTTCATCGATGAAATCGACAA
GTGTGCCAAGAAAAGCGAGAGTGTCAGCATAACGCGCGATGTATCCGGTG
TAGGCGTACAGCAGGCTCTGCTCAAAATCTTGGAAGGGAGCGTGGTGGGA
GTGCCGGAACGCGGTGGTGGCAGGAAGAATCCTCGAGGTGATGTCATTCA
TGTCGATACTACTAACATCCTCTTCATTTGCGGCGGTGCTTTTCCGGGCT
TGGATCGAATTGTCGCCGACCGCATGGCCGCCTCTAGCATTGGGTTTGGG
GCACATGTTCGGGCCGAGGGGAAAGAGGGTCCGATTGACTCATCCATTCT
GGACCATATTGAAAGTGAAGATCTTTCCAGCTTCGGGTTGATTGGCGAGC
TCATTGGTCGACTACCCATCGTCGTCAATCTTCACCCGCTCGATTTGGAG
CAATTAATCCAGATTTTGACGCAGCCGAAGAATGCAATTGTTCGACAGTT
CCGAGAGTTGCTCAAGATGAACAATGCCCAGCTTCATATATCCGACCCCG
CCTTAGGCATTATAGCTCGTAAGGCACTTGAGAAAGGAACAGGAGCACGC
GGACTGAGATCGCTTATGGAGCGCACACTCAATGAGGCCATGTACGAAGT
TCCAGACTTGGAAGGCGAGCATGCTGCCATTGTAATCGAAGAAGACCCTA
ACAAGGTCGGGGATGTGTACACCTTTGTGCTGCGTGGGAAAGGTGCGCTT
GATCGCTACCTGGCCGAATCTAGAGAGTCGAGCGACATGGATCCTGCTCT
CAAGCAAGCTGATGCTGCCTTCAGCAGCTAA
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