Ggra1540.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1540.t1
Unique Name	Ggra1540.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	658

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:408926..410899 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703245.1
PFAMs	Peptidase_M14
Max annot lvl	2759\|Eukaryota
Evalue	3.34e-94
EggNOG OGs	KOG2649@1\|root,KOG2649@2759\|Eukaryota
Description	metallocarboxypeptidase activity
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1540	Ggra1540	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 408926..410899 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1540.t1.start1	Ggra1540.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 408926..408928 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1540.t1.CDS1	Ggra1540.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 408926..410899 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1540.t1.exon1	Ggra1540.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 408926..410899 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1540.t1.stop1	Ggra1540.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 410897..410899 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1540.t1	Ggra1540.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 408926..410899 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:408926..410899+
coding sequence from alignment at tig00000844_pilon:408926..410899+

mRNA sequence

>Ggra1540.t1 ID=Ggra1540.t1|Name=Ggra1540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=658bp
MRLLHLRVFIFVLLKLLIISSGSAEKFKYLSYNELHRCLVKLADEYPALI
RLYSAQDRFALPYVGNCTDRQAASAANEELCTVWVVELSNFETLASDPER
PEMLISGELHGNEVIGPHVTLAFLQYMTENYEKNSFVRRMVDTRLVTVVP
MANAIGFYSNEREEHQNDTGKFYDPNRDFGFNQDPKACMLTVAARALNEL
FRIHLFRVLITFHGGTNVIGYEWGDNSHCNGRECKPAPDTKVMAALAERM
KDNAGPAGLYEQPYITGDMGKTVYPVNGGLEDWAYGASWAREATQCTPST
LGGYPADKTRIDDITKRCVTYLVETARDKHPPEESLGDSANMMRKGAPGD
GHVPRNVRLLVTAVDSIEPYIFVSEIEPILGGGPEVSWLISGAFQVDGTM
LQWSSQDGQVTGFSTVQRGVAGAPIVGGRGTRFSHELPESVFNVTTPIFV
RVVSVVDRNFTKQPEDSSPNVSPQSHLMGSRASTEWSYTVGKRHVRGRIV
FFSSTHMIERNATGSIHSAEYTNIAWGSGPGELKSVSDMEMCHTIMEQSA
MDGTDSCGALLVAPGRGRGSTAGTGSILAAVGGVVAILAVAFALLIFIRL
RRGRAPKIGNSAFMIVDEEEEEERRALSAAEENGEGYIAPEEVITSSAVR
PHGSDFL*

spliced messenger RNA

>Ggra1540.t1 ID=Ggra1540.t1|Name=Ggra1540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1974bp|location=Sequence derived from alignment at tig00000844_pilon:408926..410899+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCTTCTCCATCTACGCGTCTTTATCTTCGTTCTCCTAAAGCTTCT
TATTATTTCATCAGGCTCCGCTGAAAAATTCAAGTATCTTTCGTACAATG
AATTGCACCGGTGTCTCGTCAAACTCGCTGACGAGTATCCCGCTCTAATC
CGTCTATACTCAGCTCAAGATCGTTTTGCTCTTCCCTACGTGGGGAACTG
TACTGATCGCCAAGCTGCAAGTGCTGCAAATGAAGAACTGTGCACTGTTT
GGGTTGTGGAGCTCTCTAACTTCGAGACTTTGGCTAGTGATCCCGAGCGG
CCTGAGATGCTTATTAGTGGCGAGCTTCACGGTAATGAAGTAATAGGACC
GCACGTCACGCTTGCATTTTTGCAGTATATGACCGAGAACTACGAGAAGA
ACAGCTTTGTACGCCGAATGGTCGATACAAGGCTTGTAACAGTTGTACCG
ATGGCGAATGCCATTGGCTTCTACAGCAATGAAAGGGAGGAACATCAGAA
TGACACCGGCAAGTTCTACGATCCCAACAGAGACTTTGGTTTCAACCAAG
ACCCCAAGGCATGCATGCTTACCGTTGCAGCTCGTGCGCTCAATGAACTA
TTTCGCATTCATCTGTTCCGCGTCCTTATAACATTCCACGGCGGAACAAA
CGTTATCGGCTACGAATGGGGAGACAACTCTCACTGCAATGGAAGAGAAT
GCAAGCCTGCTCCAGACACCAAGGTCATGGCAGCGCTGGCCGAGAGAATG
AAAGATAATGCCGGTCCAGCTGGACTGTATGAACAGCCCTATATCACAGG
CGATATGGGCAAGACCGTGTATCCTGTAAATGGTGGTCTAGAGGATTGGG
CATATGGAGCTTCTTGGGCACGCGAAGCAACCCAATGCACACCGTCCACA
CTTGGCGGTTATCCTGCAGACAAGACAAGAATCGACGACATTACGAAGCG
ATGCGTCACATATTTAGTAGAGACTGCCAGAGATAAGCATCCACCTGAGG
AAAGTCTTGGCGACTCTGCGAATATGATGCGAAAGGGAGCTCCGGGCGAC
GGCCATGTACCGCGCAATGTGCGCTTACTCGTGACCGCCGTCGATTCTAT
TGAGCCCTATATTTTCGTTTCTGAAATAGAACCGATTCTTGGAGGAGGTC
CTGAGGTCTCGTGGCTCATCAGCGGAGCGTTCCAGGTCGATGGCACGATG
TTGCAGTGGAGTAGTCAAGATGGACAGGTGACGGGCTTTAGTACTGTGCA
AAGAGGAGTCGCCGGAGCGCCCATCGTTGGGGGACGTGGCACCCGATTCT
CTCATGAGCTTCCTGAGTCTGTGTTCAATGTCACGACACCTATCTTTGTT
CGCGTCGTTTCGGTGGTTGATCGGAACTTCACTAAGCAGCCTGAAGACAG
TTCTCCAAATGTATCGCCCCAAAGTCATTTGATGGGGTCTCGAGCAAGTA
CGGAATGGTCTTATACAGTAGGGAAACGTCATGTGCGCGGTAGAATTGTC
TTCTTTTCTTCTACTCATATGATTGAACGAAATGCTACGGGTTCGATTCA
TAGCGCGGAGTACACAAACATCGCATGGGGTTCTGGCCCGGGCGAGCTAA
AGAGTGTTTCGGATATGGAGATGTGTCACACAATCATGGAACAATCTGCA
ATGGATGGCACTGACAGCTGTGGAGCGCTACTGGTGGCCCCTGGACGAGG
CAGGGGAAGCACCGCCGGAACTGGATCGATTCTAGCCGCAGTGGGTGGGG
TTGTTGCAATACTTGCAGTTGCGTTTGCATTGTTAATATTCATTCGCTTG
AGACGAGGACGAGCGCCCAAAATCGGAAACTCTGCGTTCATGATCGTAGA
TGAAGAGGAAGAGGAAGAACGCAGAGCGCTGTCAGCTGCAGAGGAAAACG
GTGAAGGTTACATTGCTCCGGAAGAAGTAATTACTTCTTCGGCCGTAAGA
CCTCATGGAAGCGATTTTTTGTGA

protein sequence of Ggra1540.t1

>Ggra1540.t1 ID=Ggra1540.t1|Name=Ggra1540.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=658bp
MRLLHLRVFIFVLLKLLIISSGSAEKFKYLSYNELHRCLVKLADEYPALI
RLYSAQDRFALPYVGNCTDRQAASAANEELCTVWVVELSNFETLASDPER
PEMLISGELHGNEVIGPHVTLAFLQYMTENYEKNSFVRRMVDTRLVTVVP
MANAIGFYSNEREEHQNDTGKFYDPNRDFGFNQDPKACMLTVAARALNEL
FRIHLFRVLITFHGGTNVIGYEWGDNSHCNGRECKPAPDTKVMAALAERM
KDNAGPAGLYEQPYITGDMGKTVYPVNGGLEDWAYGASWAREATQCTPST
LGGYPADKTRIDDITKRCVTYLVETARDKHPPEESLGDSANMMRKGAPGD
GHVPRNVRLLVTAVDSIEPYIFVSEIEPILGGGPEVSWLISGAFQVDGTM
LQWSSQDGQVTGFSTVQRGVAGAPIVGGRGTRFSHELPESVFNVTTPIFV
RVVSVVDRNFTKQPEDSSPNVSPQSHLMGSRASTEWSYTVGKRHVRGRIV
FFSSTHMIERNATGSIHSAEYTNIAWGSGPGELKSVSDMEMCHTIMEQSA
MDGTDSCGALLVAPGRGRGSTAGTGSILAAVGGVVAILAVAFALLIFIRL
RRGRAPKIGNSAFMIVDEEEEEERRALSAAEENGEGYIAPEEVITSSAVR
PHGSDFL*

mRNA from alignment at tig00000844_pilon:408926..410899+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1540.t1 ID=Ggra1540.t1|Name=Ggra1540.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1974bp|location=Sequence derived from alignment at tig00000844_pilon:408926..410899+ (Gracilaria gracilis GNS1m male)
ATGCGTCTTCTCCATCTACGCGTCTTTATCTTCGTTCTCCTAAAGCTTCT
TATTATTTCATCAGGCTCCGCTGAAAAATTCAAGTATCTTTCGTACAATG
AATTGCACCGGTGTCTCGTCAAACTCGCTGACGAGTATCCCGCTCTAATC
CGTCTATACTCAGCTCAAGATCGTTTTGCTCTTCCCTACGTGGGGAACTG
TACTGATCGCCAAGCTGCAAGTGCTGCAAATGAAGAACTGTGCACTGTTT
GGGTTGTGGAGCTCTCTAACTTCGAGACTTTGGCTAGTGATCCCGAGCGG
CCTGAGATGCTTATTAGTGGCGAGCTTCACGGTAATGAAGTAATAGGACC
GCACGTCACGCTTGCATTTTTGCAGTATATGACCGAGAACTACGAGAAGA
ACAGCTTTGTACGCCGAATGGTCGATACAAGGCTTGTAACAGTTGTACCG
ATGGCGAATGCCATTGGCTTCTACAGCAATGAAAGGGAGGAACATCAGAA
TGACACCGGCAAGTTCTACGATCCCAACAGAGACTTTGGTTTCAACCAAG
ACCCCAAGGCATGCATGCTTACCGTTGCAGCTCGTGCGCTCAATGAACTA
TTTCGCATTCATCTGTTCCGCGTCCTTATAACATTCCACGGCGGAACAAA
CGTTATCGGCTACGAATGGGGAGACAACTCTCACTGCAATGGAAGAGAAT
GCAAGCCTGCTCCAGACACCAAGGTCATGGCAGCGCTGGCCGAGAGAATG
AAAGATAATGCCGGTCCAGCTGGACTGTATGAACAGCCCTATATCACAGG
CGATATGGGCAAGACCGTGTATCCTGTAAATGGTGGTCTAGAGGATTGGG
CATATGGAGCTTCTTGGGCACGCGAAGCAACCCAATGCACACCGTCCACA
CTTGGCGGTTATCCTGCAGACAAGACAAGAATCGACGACATTACGAAGCG
ATGCGTCACATATTTAGTAGAGACTGCCAGAGATAAGCATCCACCTGAGG
AAAGTCTTGGCGACTCTGCGAATATGATGCGAAAGGGAGCTCCGGGCGAC
GGCCATGTACCGCGCAATGTGCGCTTACTCGTGACCGCCGTCGATTCTAT
TGAGCCCTATATTTTCGTTTCTGAAATAGAACCGATTCTTGGAGGAGGTC
CTGAGGTCTCGTGGCTCATCAGCGGAGCGTTCCAGGTCGATGGCACGATG
TTGCAGTGGAGTAGTCAAGATGGACAGGTGACGGGCTTTAGTACTGTGCA
AAGAGGAGTCGCCGGAGCGCCCATCGTTGGGGGACGTGGCACCCGATTCT
CTCATGAGCTTCCTGAGTCTGTGTTCAATGTCACGACACCTATCTTTGTT
CGCGTCGTTTCGGTGGTTGATCGGAACTTCACTAAGCAGCCTGAAGACAG
TTCTCCAAATGTATCGCCCCAAAGTCATTTGATGGGGTCTCGAGCAAGTA
CGGAATGGTCTTATACAGTAGGGAAACGTCATGTGCGCGGTAGAATTGTC
TTCTTTTCTTCTACTCATATGATTGAACGAAATGCTACGGGTTCGATTCA
TAGCGCGGAGTACACAAACATCGCATGGGGTTCTGGCCCGGGCGAGCTAA
AGAGTGTTTCGGATATGGAGATGTGTCACACAATCATGGAACAATCTGCA
ATGGATGGCACTGACAGCTGTGGAGCGCTACTGGTGGCCCCTGGACGAGG
CAGGGGAAGCACCGCCGGAACTGGATCGATTCTAGCCGCAGTGGGTGGGG
TTGTTGCAATACTTGCAGTTGCGTTTGCATTGTTAATATTCATTCGCTTG
AGACGAGGACGAGCGCCCAAAATCGGAAACTCTGCGTTCATGATCGTAGA
TGAAGAGGAAGAGGAAGAACGCAGAGCGCTGTCAGCTGCAGAGGAAAACG
GTGAAGGTTACATTGCTCCGGAAGAAGTAATTACTTCTTCGGCCGTAAGA
CCTCATGGAAGCGATTTTTTGTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:408926..410899+

>Ggra1540.t1 ID=Ggra1540.t1|Name=Ggra1540.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1974bp|location=Sequence derived from alignment at tig00000844_pilon:408926..410899+ (Gracilaria gracilis GNS1m male)
ATGCGTCTTCTCCATCTACGCGTCTTTATCTTCGTTCTCCTAAAGCTTCT
TATTATTTCATCAGGCTCCGCTGAAAAATTCAAGTATCTTTCGTACAATG
AATTGCACCGGTGTCTCGTCAAACTCGCTGACGAGTATCCCGCTCTAATC
CGTCTATACTCAGCTCAAGATCGTTTTGCTCTTCCCTACGTGGGGAACTG
TACTGATCGCCAAGCTGCAAGTGCTGCAAATGAAGAACTGTGCACTGTTT
GGGTTGTGGAGCTCTCTAACTTCGAGACTTTGGCTAGTGATCCCGAGCGG
CCTGAGATGCTTATTAGTGGCGAGCTTCACGGTAATGAAGTAATAGGACC
GCACGTCACGCTTGCATTTTTGCAGTATATGACCGAGAACTACGAGAAGA
ACAGCTTTGTACGCCGAATGGTCGATACAAGGCTTGTAACAGTTGTACCG
ATGGCGAATGCCATTGGCTTCTACAGCAATGAAAGGGAGGAACATCAGAA
TGACACCGGCAAGTTCTACGATCCCAACAGAGACTTTGGTTTCAACCAAG
ACCCCAAGGCATGCATGCTTACCGTTGCAGCTCGTGCGCTCAATGAACTA
TTTCGCATTCATCTGTTCCGCGTCCTTATAACATTCCACGGCGGAACAAA
CGTTATCGGCTACGAATGGGGAGACAACTCTCACTGCAATGGAAGAGAAT
GCAAGCCTGCTCCAGACACCAAGGTCATGGCAGCGCTGGCCGAGAGAATG
AAAGATAATGCCGGTCCAGCTGGACTGTATGAACAGCCCTATATCACAGG
CGATATGGGCAAGACCGTGTATCCTGTAAATGGTGGTCTAGAGGATTGGG
CATATGGAGCTTCTTGGGCACGCGAAGCAACCCAATGCACACCGTCCACA
CTTGGCGGTTATCCTGCAGACAAGACAAGAATCGACGACATTACGAAGCG
ATGCGTCACATATTTAGTAGAGACTGCCAGAGATAAGCATCCACCTGAGG
AAAGTCTTGGCGACTCTGCGAATATGATGCGAAAGGGAGCTCCGGGCGAC
GGCCATGTACCGCGCAATGTGCGCTTACTCGTGACCGCCGTCGATTCTAT
TGAGCCCTATATTTTCGTTTCTGAAATAGAACCGATTCTTGGAGGAGGTC
CTGAGGTCTCGTGGCTCATCAGCGGAGCGTTCCAGGTCGATGGCACGATG
TTGCAGTGGAGTAGTCAAGATGGACAGGTGACGGGCTTTAGTACTGTGCA
AAGAGGAGTCGCCGGAGCGCCCATCGTTGGGGGACGTGGCACCCGATTCT
CTCATGAGCTTCCTGAGTCTGTGTTCAATGTCACGACACCTATCTTTGTT
CGCGTCGTTTCGGTGGTTGATCGGAACTTCACTAAGCAGCCTGAAGACAG
TTCTCCAAATGTATCGCCCCAAAGTCATTTGATGGGGTCTCGAGCAAGTA
CGGAATGGTCTTATACAGTAGGGAAACGTCATGTGCGCGGTAGAATTGTC
TTCTTTTCTTCTACTCATATGATTGAACGAAATGCTACGGGTTCGATTCA
TAGCGCGGAGTACACAAACATCGCATGGGGTTCTGGCCCGGGCGAGCTAA
AGAGTGTTTCGGATATGGAGATGTGTCACACAATCATGGAACAATCTGCA
ATGGATGGCACTGACAGCTGTGGAGCGCTACTGGTGGCCCCTGGACGAGG
CAGGGGAAGCACCGCCGGAACTGGATCGATTCTAGCCGCAGTGGGTGGGG
TTGTTGCAATACTTGCAGTTGCGTTTGCATTGTTAATATTCATTCGCTTG
AGACGAGGACGAGCGCCCAAAATCGGAAACTCTGCGTTCATGATCGTAGA
TGAAGAGGAAGAGGAAGAACGCAGAGCGCTGTCAGCTGCAGAGGAAAACG
GTGAAGGTTACATTGCTCCGGAAGAAGTAATTACTTCTTCGGCCGTAAGA
CCTCATGGAAGCGATTTTTTGTGA