Ggra1539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1539.t1
Unique NameGgra1539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length277
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:406813..407643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1539Ggra1539Gracilaria gracilis GNS1m malegenetig00000844_pilon 406813..407643 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1539.t1.stop1Ggra1539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 406813..406815 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1539.t1.CDS1Ggra1539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 406813..407643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1539.t1.exon1Ggra1539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 406813..407643 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1539.t1.start1Ggra1539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 407641..407643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1539.t1Ggra1539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 406813..407643 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1539.t1 ID=Ggra1539.t1|Name=Ggra1539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=277bp
MKADHDYFGFFSSNSRLMKRRIASLAKMVFQACLSPPWSDFLETFQIVLD
SYIFEQLADFKVFKTVSLNARDLLTMRLVPWYVLFFSVSVAIIFYFLKER
NSQGLGEGERLLEGHGQQHRRYQELLQEHHELREKVRGQEDRQLGTLKKS
IQSVDKFTVLFRERIRYLRKIHNVRINMSTRRKAPVKRRYAETKKKASNF
KAHYTKLRNVMDEMEKTLQRMEITRKTITKKLNSSKPSTEDVSRMLDIIS
IQMSASYEIESKLGEATKEVEFYRGS*
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spliced messenger RNA

>Ggra1539.t1 ID=Ggra1539.t1|Name=Ggra1539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000844_pilon:406813..407643- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGCTGATCATGACTACTTCGGCTTCTTTTCATCGAACTCCCGCCT
GATGAAGCGTCGTATCGCGTCTCTGGCAAAAATGGTGTTCCAAGCCTGTT
TATCCCCACCATGGTCAGATTTCCTGGAAACGTTTCAAATCGTTCTCGAT
TCGTACATCTTTGAACAGCTTGCTGATTTCAAGGTCTTCAAAACTGTCTC
CTTAAATGCTCGAGACCTACTCACTATGCGATTGGTTCCTTGGTATGTTC
TATTCTTTTCTGTATCAGTAGCGATCATATTTTACTTCCTAAAGGAAAGG
AACTCGCAAGGATTGGGAGAAGGGGAACGGCTGCTCGAAGGACATGGACA
ACAGCATCGTCGGTATCAGGAACTACTACAAGAACACCATGAATTACGTG
AAAAAGTTCGTGGCCAAGAAGATAGACAGTTAGGCACACTGAAGAAATCT
ATTCAGTCTGTCGATAAATTCACTGTACTGTTTCGTGAAAGGATACGTTA
CCTTCGCAAGATCCACAATGTTCGCATTAATATGTCGACCCGACGGAAGG
CTCCGGTTAAGAGAAGATATGCTGAAACGAAGAAGAAAGCATCCAACTTC
AAAGCTCACTACACTAAGCTCCGCAATGTAATGGATGAAATGGAAAAGAC
ATTGCAGCGCATGGAGATTACCCGCAAAACAATTACCAAGAAGCTGAACA
GTTCAAAACCTTCAACAGAAGACGTGTCCCGTATGTTAGATATTATTAGC
ATCCAGATGTCTGCTTCGTATGAGATAGAGAGCAAGCTTGGCGAAGCTAC
GAAAGAAGTAGAATTCTACCGCGGATCCTAG
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protein sequence of Ggra1539.t1

>Ggra1539.t1 ID=Ggra1539.t1|Name=Ggra1539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=277bp
MKADHDYFGFFSSNSRLMKRRIASLAKMVFQACLSPPWSDFLETFQIVLD
SYIFEQLADFKVFKTVSLNARDLLTMRLVPWYVLFFSVSVAIIFYFLKER
NSQGLGEGERLLEGHGQQHRRYQELLQEHHELREKVRGQEDRQLGTLKKS
IQSVDKFTVLFRERIRYLRKIHNVRINMSTRRKAPVKRRYAETKKKASNF
KAHYTKLRNVMDEMEKTLQRMEITRKTITKKLNSSKPSTEDVSRMLDIIS
IQMSASYEIESKLGEATKEVEFYRGS*
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mRNA from alignment at tig00000844_pilon:406813..407643-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1539.t1 ID=Ggra1539.t1|Name=Ggra1539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=831bp|location=Sequence derived from alignment at tig00000844_pilon:406813..407643- (Gracilaria gracilis GNS1m male)
ATGAAAGCTGATCATGACTACTTCGGCTTCTTTTCATCGAACTCCCGCCT
GATGAAGCGTCGTATCGCGTCTCTGGCAAAAATGGTGTTCCAAGCCTGTT
TATCCCCACCATGGTCAGATTTCCTGGAAACGTTTCAAATCGTTCTCGAT
TCGTACATCTTTGAACAGCTTGCTGATTTCAAGGTCTTCAAAACTGTCTC
CTTAAATGCTCGAGACCTACTCACTATGCGATTGGTTCCTTGGTATGTTC
TATTCTTTTCTGTATCAGTAGCGATCATATTTTACTTCCTAAAGGAAAGG
AACTCGCAAGGATTGGGAGAAGGGGAACGGCTGCTCGAAGGACATGGACA
ACAGCATCGTCGGTATCAGGAACTACTACAAGAACACCATGAATTACGTG
AAAAAGTTCGTGGCCAAGAAGATAGACAGTTAGGCACACTGAAGAAATCT
ATTCAGTCTGTCGATAAATTCACTGTACTGTTTCGTGAAAGGATACGTTA
CCTTCGCAAGATCCACAATGTTCGCATTAATATGTCGACCCGACGGAAGG
CTCCGGTTAAGAGAAGATATGCTGAAACGAAGAAGAAAGCATCCAACTTC
AAAGCTCACTACACTAAGCTCCGCAATGTAATGGATGAAATGGAAAAGAC
ATTGCAGCGCATGGAGATTACCCGCAAAACAATTACCAAGAAGCTGAACA
GTTCAAAACCTTCAACAGAAGACGTGTCCCGTATGTTAGATATTATTAGC
ATCCAGATGTCTGCTTCGTATGAGATAGAGAGCAAGCTTGGCGAAGCTAC
GAAAGAAGTAGAATTCTACCGCGGATCCTAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:406813..407643-

>Ggra1539.t1 ID=Ggra1539.t1|Name=Ggra1539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=831bp|location=Sequence derived from alignment at tig00000844_pilon:406813..407643- (Gracilaria gracilis GNS1m male)
ATGAAAGCTGATCATGACTACTTCGGCTTCTTTTCATCGAACTCCCGCCT
GATGAAGCGTCGTATCGCGTCTCTGGCAAAAATGGTGTTCCAAGCCTGTT
TATCCCCACCATGGTCAGATTTCCTGGAAACGTTTCAAATCGTTCTCGAT
TCGTACATCTTTGAACAGCTTGCTGATTTCAAGGTCTTCAAAACTGTCTC
CTTAAATGCTCGAGACCTACTCACTATGCGATTGGTTCCTTGGTATGTTC
TATTCTTTTCTGTATCAGTAGCGATCATATTTTACTTCCTAAAGGAAAGG
AACTCGCAAGGATTGGGAGAAGGGGAACGGCTGCTCGAAGGACATGGACA
ACAGCATCGTCGGTATCAGGAACTACTACAAGAACACCATGAATTACGTG
AAAAAGTTCGTGGCCAAGAAGATAGACAGTTAGGCACACTGAAGAAATCT
ATTCAGTCTGTCGATAAATTCACTGTACTGTTTCGTGAAAGGATACGTTA
CCTTCGCAAGATCCACAATGTTCGCATTAATATGTCGACCCGACGGAAGG
CTCCGGTTAAGAGAAGATATGCTGAAACGAAGAAGAAAGCATCCAACTTC
AAAGCTCACTACACTAAGCTCCGCAATGTAATGGATGAAATGGAAAAGAC
ATTGCAGCGCATGGAGATTACCCGCAAAACAATTACCAAGAAGCTGAACA
GTTCAAAACCTTCAACAGAAGACGTGTCCCGTATGTTAGATATTATTAGC
ATCCAGATGTCTGCTTCGTATGAGATAGAGAGCAAGCTTGGCGAAGCTAC
GAAAGAAGTAGAATTCTACCGCGGATCCTAG
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