Ggra1537.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1537.t1
Unique NameGgra1537.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:401960..403168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo131983
PFAMs2OG-FeII_Oxy,DIOX_N
Max annot lvl4776|Peronosporales
Evalue5.81e-57
EggNOG OGs28J4J@1|root,2QRGK@2759|Eukaryota,3Q7PY@4776|Peronosporales
Descriptionnon-haem dioxygenase in morphine synthesis N-terminal
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1537Ggra1537Gracilaria gracilis GNS1m malegenetig00000844_pilon 401960..403168 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1Ggra1537.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 401960..403168 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1.stop1Ggra1537.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 401960..401962 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1.CDS1Ggra1537.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 401960..402734 -
Ggra1537.t1.CDS2Ggra1537.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 402804..403168 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1.exon1Ggra1537.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 401960..402734 -
Ggra1537.t1.exon2Ggra1537.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 402804..403168 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1.intron1Ggra1537.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 402735..402803 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1537.t1.start1Ggra1537.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 403166..403168 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1537.t1 ID=Ggra1537.t1|Name=Ggra1537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=380bp
MLPPTLSTRQLFSHQSTDLEYVANVIKRAFAPGGPGILLISDLYEKFEHD
RIKLFQGARALANLPDEQLAQLELPQVDYAFGWSRGREILGGVVEESKGG
FFANTIYDHPSQGDAASDKKFKYFLHNNHWPSQPSCRTVEPYFKKIGRYI
NTIAIQIAHHCDRYLQSNLQSNLQSNLRNDRQLCSLEQLLRESIAAKGRL
LHYFPTDPAHSSSSPNNHQKLWSGFHNDLGIITGLVSGAYYENDNDTPMP
AAPDQTAGLYIVHGSNAQVQKYSFPADHLGFQIGETAQILSGGMLRATPH
AVKMPADMRGISRVSFVVFLQPSPQVKVSLPGLSDTESREALRTEDCIPA
LSDRYQEGNTFGEFAVGTIKPSLHFNDSE*
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spliced messenger RNA

>Ggra1537.t1 ID=Ggra1537.t1|Name=Ggra1537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1140bp|location=Sequence derived from alignment at tig00000844_pilon:401960..403168- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACCGCCAACACTTTCCACCCGTCAACTGTTTTCCCACCAGTCCAC
AGACCTTGAGTACGTGGCCAACGTCATAAAACGTGCATTTGCCCCTGGCG
GCCCGGGCATTCTACTCATCTCCGATCTGTATGAAAAGTTTGAGCACGAT
CGCATAAAGTTGTTCCAGGGAGCGCGCGCGTTGGCAAACCTTCCGGACGA
GCAGTTGGCCCAATTGGAACTGCCGCAAGTGGACTATGCATTTGGCTGGA
GTCGCGGCCGCGAGATACTTGGAGGTGTCGTGGAAGAAAGCAAGGGGGGC
TTTTTTGCCAACACCATTTATGACCATCCCTCGCAAGGCGACGCCGCCTC
TGACAAAAAATTTAAATATTTCCTGCACAACAACCATTGGCCGTCACAAC
CCTCATGCCGTACTGTCGAGCCGTATTTCAAGAAGATAGGACGCTACATA
AACACTATTGCCATTCAAATAGCCCACCACTGTGATCGATATTTGCAGAG
CAACCTGCAGAGCAACCTGCAGAGCAACCTGCGTAACGACCGCCAGCTTT
GCAGCTTGGAACAGCTCTTGCGCGAGTCAATCGCAGCCAAGGGAAGGTTG
CTACACTATTTCCCGACTGACCCCGCCCATTCATCGTCCTCGCCCAACAA
CCACCAGAAACTATGGAGTGGATTCCACAATGATCTTGGTATAATTACTG
GCTTGGTCAGCGGAGCGTATTACGAGAACGACAATGACACACCAATGCCT
GCCGCCCCAGATCAAACCGCGGGTCTCTATATCGTTCACGGATCCAATGC
ACAAGTGCAGAAATACAGCTTCCCGGCGGACCACCTCGGGTTTCAGATTG
GTGAGACTGCACAGATACTAAGTGGCGGCATGCTACGAGCAACACCACAT
GCGGTCAAAATGCCCGCCGACATGCGGGGGATATCCCGCGTAAGTTTTGT
CGTCTTCTTGCAACCCAGCCCACAAGTTAAAGTGTCTTTACCTGGCTTGA
GTGACACGGAGTCGCGAGAGGCATTAAGGACCGAAGATTGCATACCTGCG
CTTTCTGACAGGTATCAAGAGGGCAATACGTTTGGAGAATTTGCGGTGGG
AACGATAAAGCCGTCCCTCCACTTTAACGATTCGGAGTGA
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protein sequence of Ggra1537.t1

>Ggra1537.t1 ID=Ggra1537.t1|Name=Ggra1537.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=380bp
MLPPTLSTRQLFSHQSTDLEYVANVIKRAFAPGGPGILLISDLYEKFEHD
RIKLFQGARALANLPDEQLAQLELPQVDYAFGWSRGREILGGVVEESKGG
FFANTIYDHPSQGDAASDKKFKYFLHNNHWPSQPSCRTVEPYFKKIGRYI
NTIAIQIAHHCDRYLQSNLQSNLQSNLRNDRQLCSLEQLLRESIAAKGRL
LHYFPTDPAHSSSSPNNHQKLWSGFHNDLGIITGLVSGAYYENDNDTPMP
AAPDQTAGLYIVHGSNAQVQKYSFPADHLGFQIGETAQILSGGMLRATPH
AVKMPADMRGISRVSFVVFLQPSPQVKVSLPGLSDTESREALRTEDCIPA
LSDRYQEGNTFGEFAVGTIKPSLHFNDSE*
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mRNA from alignment at tig00000844_pilon:401960..403168-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1537.t1 ID=Ggra1537.t1|Name=Ggra1537.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1209bp|location=Sequence derived from alignment at tig00000844_pilon:401960..403168- (Gracilaria gracilis GNS1m male)
ATGTTACCGCCAACACTTTCCACCCGTCAACTGTTTTCCCACCAGTCCAC
AGACCTTGAGTACGTGGCCAACGTCATAAAACGTGCATTTGCCCCTGGCG
GCCCGGGCATTCTACTCATCTCCGATCTGTATGAAAAGTTTGAGCACGAT
CGCATAAAGTTGTTCCAGGGAGCGCGCGCGTTGGCAAACCTTCCGGACGA
GCAGTTGGCCCAATTGGAACTGCCGCAAGTGGACTATGCATTTGGCTGGA
GTCGCGGCCGCGAGATACTTGGAGGTGTCGTGGAAGAAAGCAAGGGGGGC
TTTTTTGCCAACACCATTTATGACCATCCCTCGCAAGGCGACGCCGCCTC
TGACAAAAAATTTAAGTATGTTCGTCCCTTTCACATATTGCACTTGTGAG
TCGCTTCTGACTTCTTTTCATGCCTTTCGTTTAGATATTTCCTGCACAAC
AACCATTGGCCGTCACAACCCTCATGCCGTACTGTCGAGCCGTATTTCAA
GAAGATAGGACGCTACATAAACACTATTGCCATTCAAATAGCCCACCACT
GTGATCGATATTTGCAGAGCAACCTGCAGAGCAACCTGCAGAGCAACCTG
CGTAACGACCGCCAGCTTTGCAGCTTGGAACAGCTCTTGCGCGAGTCAAT
CGCAGCCAAGGGAAGGTTGCTACACTATTTCCCGACTGACCCCGCCCATT
CATCGTCCTCGCCCAACAACCACCAGAAACTATGGAGTGGATTCCACAAT
GATCTTGGTATAATTACTGGCTTGGTCAGCGGAGCGTATTACGAGAACGA
CAATGACACACCAATGCCTGCCGCCCCAGATCAAACCGCGGGTCTCTATA
TCGTTCACGGATCCAATGCACAAGTGCAGAAATACAGCTTCCCGGCGGAC
CACCTCGGGTTTCAGATTGGTGAGACTGCACAGATACTAAGTGGCGGCAT
GCTACGAGCAACACCACATGCGGTCAAAATGCCCGCCGACATGCGGGGGA
TATCCCGCGTAAGTTTTGTCGTCTTCTTGCAACCCAGCCCACAAGTTAAA
GTGTCTTTACCTGGCTTGAGTGACACGGAGTCGCGAGAGGCATTAAGGAC
CGAAGATTGCATACCTGCGCTTTCTGACAGGTATCAAGAGGGCAATACGT
TTGGAGAATTTGCGGTGGGAACGATAAAGCCGTCCCTCCACTTTAACGAT
TCGGAGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:401960..403168-

>Ggra1537.t1 ID=Ggra1537.t1|Name=Ggra1537.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1140bp|location=Sequence derived from alignment at tig00000844_pilon:401960..403168- (Gracilaria gracilis GNS1m male)
ATGTTACCGCCAACACTTTCCACCCGTCAACTGTTTTCCCACCAGTCCAC
AGACCTTGAGTACGTGGCCAACGTCATAAAACGTGCATTTGCCCCTGGCG
GCCCGGGCATTCTACTCATCTCCGATCTGTATGAAAAGTTTGAGCACGAT
CGCATAAAGTTGTTCCAGGGAGCGCGCGCGTTGGCAAACCTTCCGGACGA
GCAGTTGGCCCAATTGGAACTGCCGCAAGTGGACTATGCATTTGGCTGGA
GTCGCGGCCGCGAGATACTTGGAGGTGTCGTGGAAGAAAGCAAGGGGGGC
TTTTTTGCCAACACCATTTATGACCATCCCTCGCAAGGCGACGCCGCCTC
TGACAAAAAATTTAAATATTTCCTGCACAACAACCATTGGCCGTCACAAC
CCTCATGCCGTACTGTCGAGCCGTATTTCAAGAAGATAGGACGCTACATA
AACACTATTGCCATTCAAATAGCCCACCACTGTGATCGATATTTGCAGAG
CAACCTGCAGAGCAACCTGCAGAGCAACCTGCGTAACGACCGCCAGCTTT
GCAGCTTGGAACAGCTCTTGCGCGAGTCAATCGCAGCCAAGGGAAGGTTG
CTACACTATTTCCCGACTGACCCCGCCCATTCATCGTCCTCGCCCAACAA
CCACCAGAAACTATGGAGTGGATTCCACAATGATCTTGGTATAATTACTG
GCTTGGTCAGCGGAGCGTATTACGAGAACGACAATGACACACCAATGCCT
GCCGCCCCAGATCAAACCGCGGGTCTCTATATCGTTCACGGATCCAATGC
ACAAGTGCAGAAATACAGCTTCCCGGCGGACCACCTCGGGTTTCAGATTG
GTGAGACTGCACAGATACTAAGTGGCGGCATGCTACGAGCAACACCACAT
GCGGTCAAAATGCCCGCCGACATGCGGGGGATATCCCGCGTAAGTTTTGT
CGTCTTCTTGCAACCCAGCCCACAAGTTAAAGTGTCTTTACCTGGCTTGA
GTGACACGGAGTCGCGAGAGGCATTAAGGACCGAAGATTGCATACCTGCG
CTTTCTGACAGGTATCAAGAGGGCAATACGTTTGGAGAATTTGCGGTGGG
AACGATAAAGCCGTCCCTCCACTTTAACGATTCGGAGTGA
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