Ggra1534.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1534.t1
Unique NameGgra1534.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length439
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:338268..339584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1121104.AQXH01000005_gene170
Max annot lvl976|Bacteroidetes
Evalue6.82e-09
EggNOG OGsCOG3914@1|root,COG3914@2|Bacteria,4P6AI@976|Bacteroidetes
DescriptionO-linked N-acetylglucosamine transferase SPINDLY family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1534Ggra1534Gracilaria gracilis GNS1m malegenetig00000844_pilon 338268..339584 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1534.t1.start1Ggra1534.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 338268..338270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1534.t1.CDS1Ggra1534.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 338268..339584 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1534.t1.exon1Ggra1534.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 338268..339584 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1534.t1.stop1Ggra1534.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 339582..339584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1534.t1Ggra1534.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 338268..339584 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1534.t1 ID=Ggra1534.t1|Name=Ggra1534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=439bp
MIFEKTATTVSLQATRQLSRQRPVTILFLYALVALLIAVISYNVTFSMVL
FPLASLAFSVLDRTPSYAPDALLIPFYKLSRAVGALPLNNVAARSAVSFA
SLPMRRPEAELMLSYLSPSDVYLEYGASGTTLAVPSLVHAAFSIEHDVQV
CKGIDAEMHRHHHLSKTLRAFCVPVAPGHAGWATVSPFEEGSYAAFQNYV
DLPRSNLSEQLFDRVLINGRARVACALRILPQLKSTSLVFFHDFFLRPAH
YAAILPFYHEVARVVAHAPVKGYTDEPMGLLVLRPRQEYINTDITVSRLN
AIYAHYSEEQPSEASTQIEIAYDHGLLQSDRGAFPYVSMSRQLSRQTTYV
RLLLDFVAVPFVILTYMVLRDVFRKVFLEALSAASPRGHRLLGGDMRAAT
TWSTGTSGGVLGVNAKSNSMPATSARTQLISSVGGKAE*
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spliced messenger RNA

>Ggra1534.t1 ID=Ggra1534.t1|Name=Ggra1534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000844_pilon:338268..339584+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTTCGAGAAGACCGCCACCACCGTGTCCCTGCAGGCCACGCGCCA
GCTCTCACGCCAGCGTCCCGTCACCATTTTGTTTTTGTACGCTCTTGTGG
CGCTTCTCATCGCTGTCATCTCGTACAACGTCACCTTCTCCATGGTCTTG
TTCCCGCTCGCGTCGCTGGCCTTTTCCGTTCTTGACCGCACCCCGTCCTA
CGCCCCCGACGCCCTTCTCATCCCTTTCTACAAGCTGTCGCGTGCTGTTG
GCGCCCTTCCGCTCAACAACGTTGCGGCGCGCTCAGCCGTCAGCTTCGCT
TCGTTGCCTATGAGACGCCCGGAGGCTGAGTTGATGCTCTCCTACCTGTC
TCCCAGCGACGTTTATCTGGAGTATGGCGCCAGTGGTACCACGCTTGCTG
TGCCTTCGCTCGTGCACGCCGCATTCTCCATCGAGCATGACGTGCAGGTT
TGCAAAGGCATCGATGCCGAAATGCATCGACACCACCACCTTTCAAAAAC
GCTGCGCGCGTTCTGCGTGCCGGTAGCACCTGGCCACGCTGGCTGGGCAA
CAGTCTCTCCCTTTGAAGAGGGCTCCTACGCTGCGTTTCAGAACTACGTT
GATTTACCTCGCTCAAATCTGTCGGAGCAGCTCTTCGACAGGGTGCTTAT
CAATGGTCGGGCGCGCGTTGCATGCGCGTTGCGAATATTACCACAACTCA
AGTCTACCAGCCTAGTGTTCTTTCATGACTTCTTCTTGCGACCTGCTCAT
TACGCTGCCATACTTCCGTTCTATCACGAGGTTGCGCGAGTGGTGGCACA
TGCGCCTGTCAAGGGATATACGGACGAGCCTATGGGACTGCTAGTACTAC
GCCCCCGCCAAGAATACATCAATACTGACATTACTGTTTCCCGCCTCAAT
GCCATCTACGCGCATTACTCTGAGGAACAGCCCAGCGAAGCGTCTACGCA
AATTGAAATCGCGTACGATCACGGTCTCTTGCAGAGCGACCGCGGAGCTT
TTCCATACGTCAGCATGAGTCGACAATTGTCTCGCCAAACCACATATGTG
CGATTACTACTTGATTTTGTTGCTGTTCCGTTTGTCATCCTCACCTATAT
GGTGCTTCGTGACGTGTTCCGAAAGGTGTTCCTGGAGGCGCTGTCCGCGG
CGAGTCCGCGTGGACATCGGTTGCTGGGTGGTGATATGCGAGCCGCCACG
ACCTGGTCCACAGGGACCTCTGGCGGTGTGCTCGGTGTGAATGCCAAGTC
AAATTCAATGCCGGCCACTAGTGCTAGAACACAACTCATTTCTTCTGTAG
GTGGTAAGGCCGAGTAA
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protein sequence of Ggra1534.t1

>Ggra1534.t1 ID=Ggra1534.t1|Name=Ggra1534.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=439bp
MIFEKTATTVSLQATRQLSRQRPVTILFLYALVALLIAVISYNVTFSMVL
FPLASLAFSVLDRTPSYAPDALLIPFYKLSRAVGALPLNNVAARSAVSFA
SLPMRRPEAELMLSYLSPSDVYLEYGASGTTLAVPSLVHAAFSIEHDVQV
CKGIDAEMHRHHHLSKTLRAFCVPVAPGHAGWATVSPFEEGSYAAFQNYV
DLPRSNLSEQLFDRVLINGRARVACALRILPQLKSTSLVFFHDFFLRPAH
YAAILPFYHEVARVVAHAPVKGYTDEPMGLLVLRPRQEYINTDITVSRLN
AIYAHYSEEQPSEASTQIEIAYDHGLLQSDRGAFPYVSMSRQLSRQTTYV
RLLLDFVAVPFVILTYMVLRDVFRKVFLEALSAASPRGHRLLGGDMRAAT
TWSTGTSGGVLGVNAKSNSMPATSARTQLISSVGGKAE*
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mRNA from alignment at tig00000844_pilon:338268..339584+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1534.t1 ID=Ggra1534.t1|Name=Ggra1534.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1317bp|location=Sequence derived from alignment at tig00000844_pilon:338268..339584+ (Gracilaria gracilis GNS1m male)
ATGATCTTCGAGAAGACCGCCACCACCGTGTCCCTGCAGGCCACGCGCCA
GCTCTCACGCCAGCGTCCCGTCACCATTTTGTTTTTGTACGCTCTTGTGG
CGCTTCTCATCGCTGTCATCTCGTACAACGTCACCTTCTCCATGGTCTTG
TTCCCGCTCGCGTCGCTGGCCTTTTCCGTTCTTGACCGCACCCCGTCCTA
CGCCCCCGACGCCCTTCTCATCCCTTTCTACAAGCTGTCGCGTGCTGTTG
GCGCCCTTCCGCTCAACAACGTTGCGGCGCGCTCAGCCGTCAGCTTCGCT
TCGTTGCCTATGAGACGCCCGGAGGCTGAGTTGATGCTCTCCTACCTGTC
TCCCAGCGACGTTTATCTGGAGTATGGCGCCAGTGGTACCACGCTTGCTG
TGCCTTCGCTCGTGCACGCCGCATTCTCCATCGAGCATGACGTGCAGGTT
TGCAAAGGCATCGATGCCGAAATGCATCGACACCACCACCTTTCAAAAAC
GCTGCGCGCGTTCTGCGTGCCGGTAGCACCTGGCCACGCTGGCTGGGCAA
CAGTCTCTCCCTTTGAAGAGGGCTCCTACGCTGCGTTTCAGAACTACGTT
GATTTACCTCGCTCAAATCTGTCGGAGCAGCTCTTCGACAGGGTGCTTAT
CAATGGTCGGGCGCGCGTTGCATGCGCGTTGCGAATATTACCACAACTCA
AGTCTACCAGCCTAGTGTTCTTTCATGACTTCTTCTTGCGACCTGCTCAT
TACGCTGCCATACTTCCGTTCTATCACGAGGTTGCGCGAGTGGTGGCACA
TGCGCCTGTCAAGGGATATACGGACGAGCCTATGGGACTGCTAGTACTAC
GCCCCCGCCAAGAATACATCAATACTGACATTACTGTTTCCCGCCTCAAT
GCCATCTACGCGCATTACTCTGAGGAACAGCCCAGCGAAGCGTCTACGCA
AATTGAAATCGCGTACGATCACGGTCTCTTGCAGAGCGACCGCGGAGCTT
TTCCATACGTCAGCATGAGTCGACAATTGTCTCGCCAAACCACATATGTG
CGATTACTACTTGATTTTGTTGCTGTTCCGTTTGTCATCCTCACCTATAT
GGTGCTTCGTGACGTGTTCCGAAAGGTGTTCCTGGAGGCGCTGTCCGCGG
CGAGTCCGCGTGGACATCGGTTGCTGGGTGGTGATATGCGAGCCGCCACG
ACCTGGTCCACAGGGACCTCTGGCGGTGTGCTCGGTGTGAATGCCAAGTC
AAATTCAATGCCGGCCACTAGTGCTAGAACACAACTCATTTCTTCTGTAG
GTGGTAAGGCCGAGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:338268..339584+

>Ggra1534.t1 ID=Ggra1534.t1|Name=Ggra1534.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1317bp|location=Sequence derived from alignment at tig00000844_pilon:338268..339584+ (Gracilaria gracilis GNS1m male)
ATGATCTTCGAGAAGACCGCCACCACCGTGTCCCTGCAGGCCACGCGCCA
GCTCTCACGCCAGCGTCCCGTCACCATTTTGTTTTTGTACGCTCTTGTGG
CGCTTCTCATCGCTGTCATCTCGTACAACGTCACCTTCTCCATGGTCTTG
TTCCCGCTCGCGTCGCTGGCCTTTTCCGTTCTTGACCGCACCCCGTCCTA
CGCCCCCGACGCCCTTCTCATCCCTTTCTACAAGCTGTCGCGTGCTGTTG
GCGCCCTTCCGCTCAACAACGTTGCGGCGCGCTCAGCCGTCAGCTTCGCT
TCGTTGCCTATGAGACGCCCGGAGGCTGAGTTGATGCTCTCCTACCTGTC
TCCCAGCGACGTTTATCTGGAGTATGGCGCCAGTGGTACCACGCTTGCTG
TGCCTTCGCTCGTGCACGCCGCATTCTCCATCGAGCATGACGTGCAGGTT
TGCAAAGGCATCGATGCCGAAATGCATCGACACCACCACCTTTCAAAAAC
GCTGCGCGCGTTCTGCGTGCCGGTAGCACCTGGCCACGCTGGCTGGGCAA
CAGTCTCTCCCTTTGAAGAGGGCTCCTACGCTGCGTTTCAGAACTACGTT
GATTTACCTCGCTCAAATCTGTCGGAGCAGCTCTTCGACAGGGTGCTTAT
CAATGGTCGGGCGCGCGTTGCATGCGCGTTGCGAATATTACCACAACTCA
AGTCTACCAGCCTAGTGTTCTTTCATGACTTCTTCTTGCGACCTGCTCAT
TACGCTGCCATACTTCCGTTCTATCACGAGGTTGCGCGAGTGGTGGCACA
TGCGCCTGTCAAGGGATATACGGACGAGCCTATGGGACTGCTAGTACTAC
GCCCCCGCCAAGAATACATCAATACTGACATTACTGTTTCCCGCCTCAAT
GCCATCTACGCGCATTACTCTGAGGAACAGCCCAGCGAAGCGTCTACGCA
AATTGAAATCGCGTACGATCACGGTCTCTTGCAGAGCGACCGCGGAGCTT
TTCCATACGTCAGCATGAGTCGACAATTGTCTCGCCAAACCACATATGTG
CGATTACTACTTGATTTTGTTGCTGTTCCGTTTGTCATCCTCACCTATAT
GGTGCTTCGTGACGTGTTCCGAAAGGTGTTCCTGGAGGCGCTGTCCGCGG
CGAGTCCGCGTGGACATCGGTTGCTGGGTGGTGATATGCGAGCCGCCACG
ACCTGGTCCACAGGGACCTCTGGCGGTGTGCTCGGTGTGAATGCCAAGTC
AAATTCAATGCCGGCCACTAGTGCTAGAACACAACTCATTTCTTCTGTAG
GTGGTAAGGCCGAGTAA
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