Ggra153.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra153.t1
Unique NameGgra153.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length50
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000854_piloncontigtig00000854_pilon:46..530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Ib02045.1.p
PFAMsTim17
Max annot lvl35493|Streptophyta
KEGG koko:K17795
KEGG TC3.A.8.1
Evalue0.00028
EggNOG OGsCOG5596@1|root,KOG1652@2759|Eukaryota,37QQD@33090|Viridiplantae,3GAC1@35493|Streptophyta,3KN6X@4447|Liliopsida
DescriptionMitochondrial import inner membrane translocase subunit
COG categoryU
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra153Ggra153Gracilaria gracilis GNS1m malegenetig00000854_pilon 46..530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra153.t1Ggra153.t1Gracilaria gracilis GNS1m malepolypeptidetig00000854_pilon 46..530 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra153.t1.CDS1Ggra153.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000854_pilon 46..56 +
Ggra153.t1.CDS2Ggra153.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000854_pilon 213..248 +
Ggra153.t1.CDS3Ggra153.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000854_pilon 348..392 +
Ggra153.t1.CDS4Ggra153.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000854_pilon 475..530 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra153.t1.exon1Ggra153.t1.exon1Gracilaria gracilis GNS1m maleexontig00000854_pilon 46..56 +
Ggra153.t1.exon2Ggra153.t1.exon2Gracilaria gracilis GNS1m maleexontig00000854_pilon 213..248 +
Ggra153.t1.exon3Ggra153.t1.exon3Gracilaria gracilis GNS1m maleexontig00000854_pilon 348..392 +
Ggra153.t1.exon4Ggra153.t1.exon4Gracilaria gracilis GNS1m maleexontig00000854_pilon 475..530 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra153.t1.intron1Ggra153.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000854_pilon 57..212 +
Ggra153.t1.intron2Ggra153.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000854_pilon 249..347 +
Ggra153.t1.intron3Ggra153.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000854_pilon 393..474 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra153.t1.stop1Ggra153.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000854_pilon 528..530 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra153.t1 ID=Ggra153.t1|Name=Ggra153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=50bp
XIVDDFGGAFAMGAIGGGSFAVWGGLFSSFDFVLACALQERTLLWEGFS*
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spliced messenger RNA

>Ggra153.t1 ID=Ggra153.t1|Name=Ggra153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=148bp|location=Sequence derived from alignment at tig00000854_pilon:46..530+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
aatcgtggatgATTTCGGAGGTGCTTTTGCAATGGGTGCAATTGgcggtg
gaAGCTTTGCGGTCTGGGGCGGTCTTTTTTCTTCATTTGATTTCGTTCtg
gcttgcgcgctgcaggaaagaacgctgttgtgggaggggttctcctag
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protein sequence of Ggra153.t1

>Ggra153.t1 ID=Ggra153.t1|Name=Ggra153.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=50bp
XIVDDFGGAFAMGAIGGGSFAVWGGLFSSFDFVLACALQERTLLWEGFS*
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mRNA from alignment at tig00000854_pilon:46..530+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra153.t1 ID=Ggra153.t1|Name=Ggra153.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=485bp|location=Sequence derived from alignment at tig00000854_pilon:46..530+ (Gracilaria gracilis GNS1m male)
aatcgtggatggtaagttactttcgttgaatctgattaccagaaaacgcg
ttatagcatacgacactgcggtacaggaacggaactgtactaatgttgtt
tgggttcgcgaaggaacagttctaacatgggctaccTTTTTTGTTTTGGA
AACGCCTATCACCCTAGATTTCGGAGGTGCTTTTGCAATGGGTGCAATTG
gcggtacgatttggcacttcattcgaggggctcgaaactctccgaacggt
gctcgtctcataggtgccattgacgctgtcaaggtccgtgcgcctgcatt
aggtggaAGCTTTGCGGTCTGGGGCGGTCTTTTTTCTTCATTTGATTGTA
CGCTTCAAGCAATCCGAAAGAAAGAAGATCCTTGGAACACTATAACGTCT
GGAGCGCTGACTGGAGGATTATTGTCTAGTCGTTCtggcttgcgcgctgc
aggaaagaacgctgttgtgggaggggttctcctag
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Coding sequence (CDS) from alignment at tig00000854_pilon:46..530+

>Ggra153.t1 ID=Ggra153.t1|Name=Ggra153.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=148bp|location=Sequence derived from alignment at tig00000854_pilon:46..530+ (Gracilaria gracilis GNS1m male)
aatcgtggatgATTTCGGAGGTGCTTTTGCAATGGGTGCAATTGgcggtg
gaAGCTTTGCGGTCTGGGGCGGTCTTTTTTCTTCATTTGATTTCGTTCtg
gcttgcgcgctgcaggaaagaacgctgttgtgggaggggttctcctag
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