Ggra1529.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1529.t1
Unique NameGgra1529.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:325420..326472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN18655
Preferred nameCCR2
PFAMsEpimerase
Max annot lvl35493|Streptophyta
KEGG rclassRC00004,RC00566
KEGG koko:K09753
KEGG ReactionR01615,R01941,R02193,R02220,R02506,R06569
KEGG Pathwayko00940,ko01100,ko01110,map00940,map01100,map01110
KEGG ModuleM00039
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006725,GO:0006950,GO:0007623,GO:0008150,GO:0008152,GO:0009058,GO:0009266,GO:0009409,GO:0009628,GO:0009698,GO:0009699,GO:0009808,GO:0009809,GO:0009987,GO:0016491,GO:0016620,GO:0016621,GO:0016903,GO:0019438,GO:0019748,GO:0042752,GO:0042754,GO:0044237,GO:0044249,GO:0044424,GO:0044444,GO:0044464,GO:0044550,GO:0048511,GO:0048519,GO:0050789,GO:0050896,GO:0055114,GO:0065007,GO:0071704,GO:1901360,GO:1901362,GO:1901576
Evalue1.99e-43
EggNOG OGsCOG0451@1|root,KOG1502@2759|Eukaryota,37KK8@33090|Viridiplantae,3G7E0@35493|Streptophyta
EC1.2.1.44
DescriptionCinnamoyl-CoA reductase
COG categoryV
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1529Ggra1529Gracilaria gracilis GNS1m malegenetig00000844_pilon 325420..326472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1529.t1.stop1Ggra1529.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 325420..325422 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1529.t1.CDS1Ggra1529.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 325420..326472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1529.t1.exon1Ggra1529.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 325420..326472 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1529.t1.start1Ggra1529.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 326470..326472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1529.t1Ggra1529.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 325420..326472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1529.t1 ID=Ggra1529.t1|Name=Ggra1529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MESSTKQTILVTGATSFVGSHVIAALLARSFVVRGTEPSFPNDIREALKS
LPGSENLSLHHLDLSEPESFLQPLSGCRALIHVATPVLLPLDGSLPFKTE
DEAIQMQIKPAVQGTEALFTAAAKAGVKRIILTSSTASMLAQRTRPVVLD
ENCWGDEEFCNETLMTDPYGPYRLAKVLQEKLAWKVAKEMSLQLVCINPG
YILGPSLLPAVNGSVAMLLELLEGRGCGVARCKPGKIPDQYCDLIDVREV
AEAHVLALEQEKANVRIVALSQSPLYIDMYKKLCENDSFKQYPERSLEST
LPKRKQMYDNSKMRDLGVKEIPWQDTLKESASSLAIYGHVVRGIEKLSNT
*
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spliced messenger RNA

>Ggra1529.t1 ID=Ggra1529.t1|Name=Ggra1529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:325420..326472- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCTCGACGAAGCAAACAATTCTCGTAACTGGCGCAACGTCGTT
TGTTGGGTCACACGTGATTGCTGCTCTACTCGCTCGCAGTTTTGTCGTGC
GCGGCACTGAGCCCTCCTTTCCGAATGACATTCGAGAGGCTCTGAAGTCA
TTACCAGGTTCTGAAAACCTCTCACTCCACCATTTGGATCTCAGCGAACC
AGAGTCGTTTCTTCAACCACTGTCTGGTTGCCGTGCCCTCATTCATGTCG
CAACACCAGTTCTTCTGCCCCTTGATGGTAGTTTGCCATTCAAGACTGAA
GATGAAGCAATTCAGATGCAAATCAAGCCCGCAGTGCAAGGCACAGAAGC
GCTGTTCACTGCAGCAGCCAAAGCTGGCGTAAAGCGAATCATTTTGACTT
CATCGACAGCCTCGATGCTCGCCCAACGAACACGACCTGTTGTGTTGGAT
GAGAATTGCTGGGGCGACGAAGAATTCTGCAATGAGACATTGATGACGGA
TCCTTACGGGCCATACCGACTGGCAAAAGTATTGCAGGAGAAGCTTGCTT
GGAAAGTTGCGAAGGAAATGTCACTTCAACTTGTATGTATCAATCCCGGG
TATATACTCGGACCCTCTTTGCTTCCTGCTGTAAACGGTAGTGTTGCAAT
GCTGCTTGAGCTCCTCGAAGGACGTGGTTGCGGTGTAGCACGTTGCAAAC
CAGGAAAGATTCCCGATCAATACTGTGATTTGATTGATGTTCGCGAAGTA
GCGGAGGCACACGTCCTTGCTTTGGAGCAAGAGAAAGCGAATGTTCGTAT
CGTAGCGTTGTCACAATCACCCCTTTACATTGACATGTACAAGAAGCTAT
GTGAAAATGATTCTTTCAAACAGTACCCGGAACGTTCGTTAGAAAGCACT
CTACCAAAACGCAAACAGATGTACGATAACAGTAAGATGCGAGATTTGGG
TGTGAAGGAAATACCGTGGCAGGACACTCTTAAAGAGAGCGCATCATCCT
TAGCAATCTACGGTCACGTTGTAAGAGGTATAGAGAAGTTGAGTAATACA
TAG
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protein sequence of Ggra1529.t1

>Ggra1529.t1 ID=Ggra1529.t1|Name=Ggra1529.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MESSTKQTILVTGATSFVGSHVIAALLARSFVVRGTEPSFPNDIREALKS
LPGSENLSLHHLDLSEPESFLQPLSGCRALIHVATPVLLPLDGSLPFKTE
DEAIQMQIKPAVQGTEALFTAAAKAGVKRIILTSSTASMLAQRTRPVVLD
ENCWGDEEFCNETLMTDPYGPYRLAKVLQEKLAWKVAKEMSLQLVCINPG
YILGPSLLPAVNGSVAMLLELLEGRGCGVARCKPGKIPDQYCDLIDVREV
AEAHVLALEQEKANVRIVALSQSPLYIDMYKKLCENDSFKQYPERSLEST
LPKRKQMYDNSKMRDLGVKEIPWQDTLKESASSLAIYGHVVRGIEKLSNT
*
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mRNA from alignment at tig00000844_pilon:325420..326472-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1529.t1 ID=Ggra1529.t1|Name=Ggra1529.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:325420..326472- (Gracilaria gracilis GNS1m male)
ATGGAATCCTCGACGAAGCAAACAATTCTCGTAACTGGCGCAACGTCGTT
TGTTGGGTCACACGTGATTGCTGCTCTACTCGCTCGCAGTTTTGTCGTGC
GCGGCACTGAGCCCTCCTTTCCGAATGACATTCGAGAGGCTCTGAAGTCA
TTACCAGGTTCTGAAAACCTCTCACTCCACCATTTGGATCTCAGCGAACC
AGAGTCGTTTCTTCAACCACTGTCTGGTTGCCGTGCCCTCATTCATGTCG
CAACACCAGTTCTTCTGCCCCTTGATGGTAGTTTGCCATTCAAGACTGAA
GATGAAGCAATTCAGATGCAAATCAAGCCCGCAGTGCAAGGCACAGAAGC
GCTGTTCACTGCAGCAGCCAAAGCTGGCGTAAAGCGAATCATTTTGACTT
CATCGACAGCCTCGATGCTCGCCCAACGAACACGACCTGTTGTGTTGGAT
GAGAATTGCTGGGGCGACGAAGAATTCTGCAATGAGACATTGATGACGGA
TCCTTACGGGCCATACCGACTGGCAAAAGTATTGCAGGAGAAGCTTGCTT
GGAAAGTTGCGAAGGAAATGTCACTTCAACTTGTATGTATCAATCCCGGG
TATATACTCGGACCCTCTTTGCTTCCTGCTGTAAACGGTAGTGTTGCAAT
GCTGCTTGAGCTCCTCGAAGGACGTGGTTGCGGTGTAGCACGTTGCAAAC
CAGGAAAGATTCCCGATCAATACTGTGATTTGATTGATGTTCGCGAAGTA
GCGGAGGCACACGTCCTTGCTTTGGAGCAAGAGAAAGCGAATGTTCGTAT
CGTAGCGTTGTCACAATCACCCCTTTACATTGACATGTACAAGAAGCTAT
GTGAAAATGATTCTTTCAAACAGTACCCGGAACGTTCGTTAGAAAGCACT
CTACCAAAACGCAAACAGATGTACGATAACAGTAAGATGCGAGATTTGGG
TGTGAAGGAAATACCGTGGCAGGACACTCTTAAAGAGAGCGCATCATCCT
TAGCAATCTACGGTCACGTTGTAAGAGGTATAGAGAAGTTGAGTAATACA
TAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:325420..326472-

>Ggra1529.t1 ID=Ggra1529.t1|Name=Ggra1529.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:325420..326472- (Gracilaria gracilis GNS1m male)
ATGGAATCCTCGACGAAGCAAACAATTCTCGTAACTGGCGCAACGTCGTT
TGTTGGGTCACACGTGATTGCTGCTCTACTCGCTCGCAGTTTTGTCGTGC
GCGGCACTGAGCCCTCCTTTCCGAATGACATTCGAGAGGCTCTGAAGTCA
TTACCAGGTTCTGAAAACCTCTCACTCCACCATTTGGATCTCAGCGAACC
AGAGTCGTTTCTTCAACCACTGTCTGGTTGCCGTGCCCTCATTCATGTCG
CAACACCAGTTCTTCTGCCCCTTGATGGTAGTTTGCCATTCAAGACTGAA
GATGAAGCAATTCAGATGCAAATCAAGCCCGCAGTGCAAGGCACAGAAGC
GCTGTTCACTGCAGCAGCCAAAGCTGGCGTAAAGCGAATCATTTTGACTT
CATCGACAGCCTCGATGCTCGCCCAACGAACACGACCTGTTGTGTTGGAT
GAGAATTGCTGGGGCGACGAAGAATTCTGCAATGAGACATTGATGACGGA
TCCTTACGGGCCATACCGACTGGCAAAAGTATTGCAGGAGAAGCTTGCTT
GGAAAGTTGCGAAGGAAATGTCACTTCAACTTGTATGTATCAATCCCGGG
TATATACTCGGACCCTCTTTGCTTCCTGCTGTAAACGGTAGTGTTGCAAT
GCTGCTTGAGCTCCTCGAAGGACGTGGTTGCGGTGTAGCACGTTGCAAAC
CAGGAAAGATTCCCGATCAATACTGTGATTTGATTGATGTTCGCGAAGTA
GCGGAGGCACACGTCCTTGCTTTGGAGCAAGAGAAAGCGAATGTTCGTAT
CGTAGCGTTGTCACAATCACCCCTTTACATTGACATGTACAAGAAGCTAT
GTGAAAATGATTCTTTCAAACAGTACCCGGAACGTTCGTTAGAAAGCACT
CTACCAAAACGCAAACAGATGTACGATAACAGTAAGATGCGAGATTTGGG
TGTGAAGGAAATACCGTGGCAGGACACTCTTAAAGAGAGCGCATCATCCT
TAGCAATCTACGGTCACGTTGTAAGAGGTATAGAGAAGTTGAGTAATACA
TAG
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