Ggra1526.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1526.t1
Unique NameGgra1526.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:318689..320023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog65071.PYU1_T000510
PFAMsKA1,Pkinase
Max annot lvl121069|Pythiales
Evalue3.06e-58
EggNOG OGsKOG0583@1|root,KOG0583@2759|Eukaryota,1MFX1@121069|Pythiales
DescriptionOSK1. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1526Ggra1526Gracilaria gracilis GNS1m malegenetig00000844_pilon 318689..320023 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1526.t1.stop1Ggra1526.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 318689..318691 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1526.t1.CDS1Ggra1526.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 318689..320023 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1526.t1.exon1Ggra1526.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 318689..320023 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1526.t1.start1Ggra1526.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 320021..320023 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1526.t1Ggra1526.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 318689..320023 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1526.t1 ID=Ggra1526.t1|Name=Ggra1526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=445bp
MPTRTVGRYRLTKELGVGMFSKVMLAVDDDTAHLYAVKVMRKDSLEDMDM
ARYARREAAVLRKLSHPNIVAFVEAIQSDTKLFLVMEIAPGRELLDIVTN
GPLSESEARLYMTQLVDAVAYLHSNGVVHRDLKPDNVLVDVQNRSLKIID
FGLTGLIRRNSLMTTSCGSSYYSAPEVTYGNGVGYDGAKADAWTLGILAY
ILLTGAHPFVDNNGQLMTAMMRQGIVEYPQSLSRAAMHFTSRLLTLDPTK
RYSVAQVSLHPWLTGKPAPSPAQHAPPAKKDPQPNQDAADYGRTSARRMG
TFSVPHAHKSLFSRSHSDRHNQSSPSLASRRRSSHKSPNSTSFFWFRRQN
MNQQLQDDQHCALEDESNSSQNGSRKGSVERPRGLLEGFASRREGRLTFD
FITSRSHTDNTDSVPRARRQLSLTSRTKNLLMRTSLGSLDQQQQ*
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spliced messenger RNA

>Ggra1526.t1 ID=Ggra1526.t1|Name=Ggra1526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000844_pilon:318689..320023- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTACGCGCACGGTGGGTCGCTATCGACTCACCAAGGAGCTGGGCGT
CGGCATGTTCTCCAAGGTCATGCTGGCTGTCGATGACGATACTGCCCATC
TTTACGCCGTCAAGGTCATGAGGAAGGACAGCTTGGAGGACATGGACATG
GCTCGCTACGCCCGTCGAGAAGCCGCTGTGCTGCGCAAGCTGTCGCATCC
CAATATCGTCGCCTTCGTCGAAGCCATTCAGAGTGACACCAAGCTTTTCC
TCGTCATGGAGATTGCCCCTGGCCGCGAGTTGCTCGACATTGTCACCAAT
GGTCCCCTGTCTGAATCGGAAGCTAGGCTCTACATGACCCAACTAGTTGA
CGCTGTCGCATATCTTCACAGCAACGGTGTCGTCCATCGCGACCTCAAAC
CCGACAACGTGCTCGTCGACGTTCAGAACCGCTCGCTCAAGATCATCGAC
TTTGGTCTCACGGGCCTCATCCGTCGCAACTCCCTCATGACAACCTCGTG
TGGCTCCAGTTACTACTCCGCACCGGAGGTCACCTACGGAAACGGCGTCG
GTTACGACGGCGCAAAGGCTGATGCATGGACGCTTGGAATTCTCGCCTAC
ATCCTTCTCACCGGCGCACATCCGTTCGTCGACAACAATGGGCAGCTAAT
GACCGCCATGATGAGGCAGGGTATTGTCGAATATCCGCAATCTCTTTCGC
GCGCTGCCATGCATTTCACCTCCCGCTTACTCACTTTGGACCCTACCAAA
CGCTACTCCGTTGCGCAGGTTAGCTTGCATCCCTGGCTTACTGGAAAGCC
TGCTCCGTCGCCTGCACAACACGCCCCACCTGCGAAAAAGGACCCTCAAC
CGAACCAAGACGCTGCTGACTACGGTCGCACATCCGCTAGAAGAATGGGT
ACATTTTCGGTTCCACACGCCCACAAGTCACTGTTCAGTCGTTCACATTC
TGATCGCCATAATCAAAGTTCTCCTAGTTTAGCATCACGCCGACGTTCAA
GTCACAAGTCGCCAAACAGCACTTCATTCTTTTGGTTTCGTAGACAAAAT
ATGAATCAACAACTACAAGATGATCAACATTGCGCTCTTGAAGACGAGTC
TAATTCCTCTCAAAACGGCAGCAGAAAAGGTTCCGTAGAGCGACCAAGGG
GCTTGTTGGAAGGCTTTGCATCACGGCGAGAAGGACGTCTTACGTTTGAC
TTTATCACGTCGAGATCACATACTGACAACACCGATTCTGTGCCTCGAGC
ACGACGGCAACTCTCGCTCACCAGCCGTACAAAGAATTTACTTATGCGTA
CCTCTCTAGGATCCCTTGATCAGCAACAGCAATAG
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protein sequence of Ggra1526.t1

>Ggra1526.t1 ID=Ggra1526.t1|Name=Ggra1526.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=445bp
MPTRTVGRYRLTKELGVGMFSKVMLAVDDDTAHLYAVKVMRKDSLEDMDM
ARYARREAAVLRKLSHPNIVAFVEAIQSDTKLFLVMEIAPGRELLDIVTN
GPLSESEARLYMTQLVDAVAYLHSNGVVHRDLKPDNVLVDVQNRSLKIID
FGLTGLIRRNSLMTTSCGSSYYSAPEVTYGNGVGYDGAKADAWTLGILAY
ILLTGAHPFVDNNGQLMTAMMRQGIVEYPQSLSRAAMHFTSRLLTLDPTK
RYSVAQVSLHPWLTGKPAPSPAQHAPPAKKDPQPNQDAADYGRTSARRMG
TFSVPHAHKSLFSRSHSDRHNQSSPSLASRRRSSHKSPNSTSFFWFRRQN
MNQQLQDDQHCALEDESNSSQNGSRKGSVERPRGLLEGFASRREGRLTFD
FITSRSHTDNTDSVPRARRQLSLTSRTKNLLMRTSLGSLDQQQQ*
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mRNA from alignment at tig00000844_pilon:318689..320023-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1526.t1 ID=Ggra1526.t1|Name=Ggra1526.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000844_pilon:318689..320023- (Gracilaria gracilis GNS1m male)
ATGCCTACGCGCACGGTGGGTCGCTATCGACTCACCAAGGAGCTGGGCGT
CGGCATGTTCTCCAAGGTCATGCTGGCTGTCGATGACGATACTGCCCATC
TTTACGCCGTCAAGGTCATGAGGAAGGACAGCTTGGAGGACATGGACATG
GCTCGCTACGCCCGTCGAGAAGCCGCTGTGCTGCGCAAGCTGTCGCATCC
CAATATCGTCGCCTTCGTCGAAGCCATTCAGAGTGACACCAAGCTTTTCC
TCGTCATGGAGATTGCCCCTGGCCGCGAGTTGCTCGACATTGTCACCAAT
GGTCCCCTGTCTGAATCGGAAGCTAGGCTCTACATGACCCAACTAGTTGA
CGCTGTCGCATATCTTCACAGCAACGGTGTCGTCCATCGCGACCTCAAAC
CCGACAACGTGCTCGTCGACGTTCAGAACCGCTCGCTCAAGATCATCGAC
TTTGGTCTCACGGGCCTCATCCGTCGCAACTCCCTCATGACAACCTCGTG
TGGCTCCAGTTACTACTCCGCACCGGAGGTCACCTACGGAAACGGCGTCG
GTTACGACGGCGCAAAGGCTGATGCATGGACGCTTGGAATTCTCGCCTAC
ATCCTTCTCACCGGCGCACATCCGTTCGTCGACAACAATGGGCAGCTAAT
GACCGCCATGATGAGGCAGGGTATTGTCGAATATCCGCAATCTCTTTCGC
GCGCTGCCATGCATTTCACCTCCCGCTTACTCACTTTGGACCCTACCAAA
CGCTACTCCGTTGCGCAGGTTAGCTTGCATCCCTGGCTTACTGGAAAGCC
TGCTCCGTCGCCTGCACAACACGCCCCACCTGCGAAAAAGGACCCTCAAC
CGAACCAAGACGCTGCTGACTACGGTCGCACATCCGCTAGAAGAATGGGT
ACATTTTCGGTTCCACACGCCCACAAGTCACTGTTCAGTCGTTCACATTC
TGATCGCCATAATCAAAGTTCTCCTAGTTTAGCATCACGCCGACGTTCAA
GTCACAAGTCGCCAAACAGCACTTCATTCTTTTGGTTTCGTAGACAAAAT
ATGAATCAACAACTACAAGATGATCAACATTGCGCTCTTGAAGACGAGTC
TAATTCCTCTCAAAACGGCAGCAGAAAAGGTTCCGTAGAGCGACCAAGGG
GCTTGTTGGAAGGCTTTGCATCACGGCGAGAAGGACGTCTTACGTTTGAC
TTTATCACGTCGAGATCACATACTGACAACACCGATTCTGTGCCTCGAGC
ACGACGGCAACTCTCGCTCACCAGCCGTACAAAGAATTTACTTATGCGTA
CCTCTCTAGGATCCCTTGATCAGCAACAGCAATAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:318689..320023-

>Ggra1526.t1 ID=Ggra1526.t1|Name=Ggra1526.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000844_pilon:318689..320023- (Gracilaria gracilis GNS1m male)
ATGCCTACGCGCACGGTGGGTCGCTATCGACTCACCAAGGAGCTGGGCGT
CGGCATGTTCTCCAAGGTCATGCTGGCTGTCGATGACGATACTGCCCATC
TTTACGCCGTCAAGGTCATGAGGAAGGACAGCTTGGAGGACATGGACATG
GCTCGCTACGCCCGTCGAGAAGCCGCTGTGCTGCGCAAGCTGTCGCATCC
CAATATCGTCGCCTTCGTCGAAGCCATTCAGAGTGACACCAAGCTTTTCC
TCGTCATGGAGATTGCCCCTGGCCGCGAGTTGCTCGACATTGTCACCAAT
GGTCCCCTGTCTGAATCGGAAGCTAGGCTCTACATGACCCAACTAGTTGA
CGCTGTCGCATATCTTCACAGCAACGGTGTCGTCCATCGCGACCTCAAAC
CCGACAACGTGCTCGTCGACGTTCAGAACCGCTCGCTCAAGATCATCGAC
TTTGGTCTCACGGGCCTCATCCGTCGCAACTCCCTCATGACAACCTCGTG
TGGCTCCAGTTACTACTCCGCACCGGAGGTCACCTACGGAAACGGCGTCG
GTTACGACGGCGCAAAGGCTGATGCATGGACGCTTGGAATTCTCGCCTAC
ATCCTTCTCACCGGCGCACATCCGTTCGTCGACAACAATGGGCAGCTAAT
GACCGCCATGATGAGGCAGGGTATTGTCGAATATCCGCAATCTCTTTCGC
GCGCTGCCATGCATTTCACCTCCCGCTTACTCACTTTGGACCCTACCAAA
CGCTACTCCGTTGCGCAGGTTAGCTTGCATCCCTGGCTTACTGGAAAGCC
TGCTCCGTCGCCTGCACAACACGCCCCACCTGCGAAAAAGGACCCTCAAC
CGAACCAAGACGCTGCTGACTACGGTCGCACATCCGCTAGAAGAATGGGT
ACATTTTCGGTTCCACACGCCCACAAGTCACTGTTCAGTCGTTCACATTC
TGATCGCCATAATCAAAGTTCTCCTAGTTTAGCATCACGCCGACGTTCAA
GTCACAAGTCGCCAAACAGCACTTCATTCTTTTGGTTTCGTAGACAAAAT
ATGAATCAACAACTACAAGATGATCAACATTGCGCTCTTGAAGACGAGTC
TAATTCCTCTCAAAACGGCAGCAGAAAAGGTTCCGTAGAGCGACCAAGGG
GCTTGTTGGAAGGCTTTGCATCACGGCGAGAAGGACGTCTTACGTTTGAC
TTTATCACGTCGAGATCACATACTGACAACACCGATTCTGTGCCTCGAGC
ACGACGGCAACTCTCGCTCACCAGCCGTACAAAGAATTTACTTATGCGTA
CCTCTCTAGGATCCCTTGATCAGCAACAGCAATAG
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