Ggra1525.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1525.t1
Unique NameGgra1525.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:317361..318194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S169_108V6.1
PFAMsCwf_Cwc_15
Max annot lvl35493|Streptophyta
KEGG koko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071007,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
Evalue1.79e-23
EggNOG OGsKOG3228@1|root,KOG3228@2759|Eukaryota,37RUK@33090|Viridiplantae,3GA9C@35493|Streptophyta
DescriptionProtein CWC15 homolog
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1525Ggra1525Gracilaria gracilis GNS1m malegenetig00000844_pilon 317361..318194 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1525.t1.start1Ggra1525.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 317361..317363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1525.t1.CDS1Ggra1525.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 317361..318194 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1525.t1.exon1Ggra1525.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 317361..318194 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1525.t1.stop1Ggra1525.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 318192..318194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1525.t1Ggra1525.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 317361..318194 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1525.t1 ID=Ggra1525.t1|Name=Ggra1525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=278bp
MTTAHRATWKAARGGLQEEGSFRLHAPSAAVSGKDAPTERNLKKRHFTLD
DASRDEMRVQIEDGAEKLSKRPRRSRFGPTPEVDATANEGDGGGTPKLLP
PPRDAALDTGDGKENSKRERGAVDNPGVSATPEGEEPDHVREEKESEEPQ
DDSGDESDESDEDEAELLAELERIRKEREFERAKKQAEDQERLEREETTK
AASENPLLSNLANFNDEISETASIATGSVPAFAVRRRWDDDVVFRNQARG
ERKQRPRFLNDTIRNDFHRRFMRQYMR*
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spliced messenger RNA

>Ggra1525.t1 ID=Ggra1525.t1|Name=Ggra1525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000844_pilon:317361..318194+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACCGCACACCGCGCAACATGGAAGGCCGCAAGAGGCGGGCTGCA
GGAGGAAGGGAGCTTTCGGTTGCACGCTCCGTCGGCGGCGGTGTCCGGAA
AGGACGCGCCCACCGAGCGAAACTTGAAGAAACGGCACTTCACGCTCGAC
GATGCGTCGCGTGATGAAATGCGGGTACAAATTGAGGATGGTGCCGAAAA
GCTCAGTAAGAGGCCGCGCCGTTCGCGCTTCGGACCAACACCCGAAGTAG
ATGCTACGGCAAATGAGGGCGATGGCGGTGGGACACCGAAGCTCTTACCT
CCTCCTAGAGACGCTGCGTTGGACACAGGTGATGGGAAAGAAAATAGCAA
GCGTGAACGTGGCGCTGTTGATAATCCGGGCGTGTCTGCAACACCGGAGG
GTGAAGAACCCGATCACGTCCGCGAAGAGAAAGAATCCGAAGAACCTCAG
GACGATTCAGGAGACGAATCCGACGAATCCGACGAGGATGAAGCCGAGCT
CCTAGCGGAGCTTGAGCGCATTCGGAAAGAACGTGAATTTGAGAGAGCGA
AAAAACAAGCCGAGGACCAAGAGCGGTTAGAACGGGAGGAGACTACAAAG
GCGGCATCTGAGAACCCGTTGCTGTCGAATTTGGCCAACTTTAATGACGA
AATCAGCGAAACTGCTAGTATTGCGACGGGCAGTGTCCCGGCTTTCGCCG
TGAGAAGACGGTGGGACGATGATGTGGTGTTCCGTAATCAGGCAAGAGGT
GAACGCAAGCAAAGGCCAAGATTTCTGAACGATACAATCCGAAACGACTT
TCACAGGAGGTTCATGAGGCAATACATGCGATAG
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protein sequence of Ggra1525.t1

>Ggra1525.t1 ID=Ggra1525.t1|Name=Ggra1525.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=278bp
MTTAHRATWKAARGGLQEEGSFRLHAPSAAVSGKDAPTERNLKKRHFTLD
DASRDEMRVQIEDGAEKLSKRPRRSRFGPTPEVDATANEGDGGGTPKLLP
PPRDAALDTGDGKENSKRERGAVDNPGVSATPEGEEPDHVREEKESEEPQ
DDSGDESDESDEDEAELLAELERIRKEREFERAKKQAEDQERLEREETTK
AASENPLLSNLANFNDEISETASIATGSVPAFAVRRRWDDDVVFRNQARG
ERKQRPRFLNDTIRNDFHRRFMRQYMR*
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mRNA from alignment at tig00000844_pilon:317361..318194+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1525.t1 ID=Ggra1525.t1|Name=Ggra1525.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=834bp|location=Sequence derived from alignment at tig00000844_pilon:317361..318194+ (Gracilaria gracilis GNS1m male)
ATGACAACCGCACACCGCGCAACATGGAAGGCCGCAAGAGGCGGGCTGCA
GGAGGAAGGGAGCTTTCGGTTGCACGCTCCGTCGGCGGCGGTGTCCGGAA
AGGACGCGCCCACCGAGCGAAACTTGAAGAAACGGCACTTCACGCTCGAC
GATGCGTCGCGTGATGAAATGCGGGTACAAATTGAGGATGGTGCCGAAAA
GCTCAGTAAGAGGCCGCGCCGTTCGCGCTTCGGACCAACACCCGAAGTAG
ATGCTACGGCAAATGAGGGCGATGGCGGTGGGACACCGAAGCTCTTACCT
CCTCCTAGAGACGCTGCGTTGGACACAGGTGATGGGAAAGAAAATAGCAA
GCGTGAACGTGGCGCTGTTGATAATCCGGGCGTGTCTGCAACACCGGAGG
GTGAAGAACCCGATCACGTCCGCGAAGAGAAAGAATCCGAAGAACCTCAG
GACGATTCAGGAGACGAATCCGACGAATCCGACGAGGATGAAGCCGAGCT
CCTAGCGGAGCTTGAGCGCATTCGGAAAGAACGTGAATTTGAGAGAGCGA
AAAAACAAGCCGAGGACCAAGAGCGGTTAGAACGGGAGGAGACTACAAAG
GCGGCATCTGAGAACCCGTTGCTGTCGAATTTGGCCAACTTTAATGACGA
AATCAGCGAAACTGCTAGTATTGCGACGGGCAGTGTCCCGGCTTTCGCCG
TGAGAAGACGGTGGGACGATGATGTGGTGTTCCGTAATCAGGCAAGAGGT
GAACGCAAGCAAAGGCCAAGATTTCTGAACGATACAATCCGAAACGACTT
TCACAGGAGGTTCATGAGGCAATACATGCGATAG
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Coding sequence (CDS) from alignment at tig00000844_pilon:317361..318194+

>Ggra1525.t1 ID=Ggra1525.t1|Name=Ggra1525.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=834bp|location=Sequence derived from alignment at tig00000844_pilon:317361..318194+ (Gracilaria gracilis GNS1m male)
ATGACAACCGCACACCGCGCAACATGGAAGGCCGCAAGAGGCGGGCTGCA
GGAGGAAGGGAGCTTTCGGTTGCACGCTCCGTCGGCGGCGGTGTCCGGAA
AGGACGCGCCCACCGAGCGAAACTTGAAGAAACGGCACTTCACGCTCGAC
GATGCGTCGCGTGATGAAATGCGGGTACAAATTGAGGATGGTGCCGAAAA
GCTCAGTAAGAGGCCGCGCCGTTCGCGCTTCGGACCAACACCCGAAGTAG
ATGCTACGGCAAATGAGGGCGATGGCGGTGGGACACCGAAGCTCTTACCT
CCTCCTAGAGACGCTGCGTTGGACACAGGTGATGGGAAAGAAAATAGCAA
GCGTGAACGTGGCGCTGTTGATAATCCGGGCGTGTCTGCAACACCGGAGG
GTGAAGAACCCGATCACGTCCGCGAAGAGAAAGAATCCGAAGAACCTCAG
GACGATTCAGGAGACGAATCCGACGAATCCGACGAGGATGAAGCCGAGCT
CCTAGCGGAGCTTGAGCGCATTCGGAAAGAACGTGAATTTGAGAGAGCGA
AAAAACAAGCCGAGGACCAAGAGCGGTTAGAACGGGAGGAGACTACAAAG
GCGGCATCTGAGAACCCGTTGCTGTCGAATTTGGCCAACTTTAATGACGA
AATCAGCGAAACTGCTAGTATTGCGACGGGCAGTGTCCCGGCTTTCGCCG
TGAGAAGACGGTGGGACGATGATGTGGTGTTCCGTAATCAGGCAAGAGGT
GAACGCAAGCAAAGGCCAAGATTTCTGAACGATACAATCCGAAACGACTT
TCACAGGAGGTTCATGAGGCAATACATGCGATAG
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