Ggra1523.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1523.t1
Unique NameGgra1523.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length568
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:314082..315785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706059.1
Preferred namePOLR3C
PFAMsHTH_9,RNA_pol_Rpc82,TFIIE_alpha
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03023
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006355,GO:0006359,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0030880,GO:0031323,GO:0031326,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048518,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050794,GO:0051171,GO:0051239,GO:0051240,GO:0051252,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0080134,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Evalue1.14e-15
EggNOG OGsKOG2587@1|root,KOG2587@2759|Eukaryota
DescriptionDNA-directed 5'-3' RNA polymerase activity
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1523Ggra1523Gracilaria gracilis GNS1m malegenetig00000844_pilon 314082..315785 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1523.t1.start1Ggra1523.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 314082..314084 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1523.t1.CDS1Ggra1523.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 314082..315785 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1523.t1.exon1Ggra1523.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 314082..315785 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1523.t1.stop1Ggra1523.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 315783..315785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1523.t1Ggra1523.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 314082..315785 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1523.t1 ID=Ggra1523.t1|Name=Ggra1523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=568bp
MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLVALARLASPYFEAA
CARSQNQHRVVGDHQRLDFVRDSLAVLCQHGIVLHDELLNLQISKRNPLS
NGASPLFNPRTRIQYYCDVNVLLYRPRIPLYLGFARRRFGEFGHAVLSAL
LERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLIDMVQSGVVHWCGKRK
RRSSLRAKLQIQKEEATVESVGSKRPNPDVVHYDDDYDEDDYDDEDDNRE
RIQIGRGDNMRSVIVPDKDNDIDIWGVCYWHLNREFRNECCLMVVGTRVR
SELCVQILRVGLQIALSREDCQQPSDDMETAEVHTDDIKKGLEEFDLFVS
AQEFWNAALVLAKHDPPIVLAVPPHAPTHLKFVPGRLVAETRQKTAEEFI
MSRFGSTGRRIFRALALEGAMEEKMLAEKCMQPLKVVREHLFRMYQDRVI
VTQEVPRSNDQQRASNWFYLWKVNTFSIHRSLLEVMYKTLLNLFLQFEML
DKDSKTPEEQKKLRNRETLLVSSILRVDQSVMVMRDFGPITAVYFPSKYE
VLDGYIIHSKKRRRRVT*
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spliced messenger RNA

>Ggra1523.t1 ID=Ggra1523.t1|Name=Ggra1523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000844_pilon:314082..315785+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCCGACAGCATGAGGCGCTCGCGTGTGCCATAGCGCGTTATCACTT
CAAGCCCATTGTGGCCGAGGTTGTTCGCCTTCTTTGTCTTCATCCGGGCT
CCACGCTCGTCGCGCTCGCTCGTTTGGCGTCGCCGTACTTCGAGGCCGCT
TGCGCGCGCAGTCAGAATCAACACCGCGTTGTTGGAGATCACCAGCGACT
TGATTTCGTGCGTGATTCGCTCGCCGTGCTGTGTCAGCATGGTATTGTGC
TCCACGACGAGCTGCTTAACTTGCAGATTTCGAAGCGCAATCCGTTGAGC
AATGGCGCTTCACCTCTGTTCAATCCACGCACCCGCATTCAGTATTATTG
CGATGTGAACGTGCTGCTGTATAGACCTCGTATCCCGTTGTATCTTGGCT
TTGCTCGCCGGCGCTTTGGCGAGTTTGGTCATGCTGTTCTCTCTGCTTTG
CTGGAGAGAGGACGACTCACTTCCGCCCAGCTTTTTAAATGCACTTTGGC
CCCAAAGATGGCCGAGTTTGGTATTTCAGAAGCCGCCGTTCAGGCCTGTC
TCATCGACATGGTTCAATCCGGCGTTGTACATTGGTGCGGGAAGCGCAAA
AGACGCTCATCCTTACGGGCCAAACTCCAAATCCAAAAGGAAGAAGCAAC
CGTAGAGTCCGTTGGCTCAAAGCGGCCCAACCCGGATGTTGTGCactacg
acgacgattacgatgaagatgactacgacgatgaggatgacaatCGGGAG
CGTATTCAGATCGGTCGGGGTGATAATATGCGATCCGTCATCGTGCCGGA
CAAGGACAATGACATCGATATCTGGGGTGTGTGTTATTGGCATCTCAATC
GTGAGTTTCGGAATGAATGCTGTCTCATGGTGGTTGGAACTCGCGTTAGA
AGCGAACTATGTGTACAAATATTGCGAGTAGGCTTGCAAATTGCATTGTC
AAGAGAGGATTGTCAACAACCTTCGGATGATATGGAAACCGCTGAGGTCC
ATACGGATGATATCAAGAAGGGCTTAGAAGAGTTTGATTTGTTCGTTAGC
GCACAGGAGTTTTGGAATGCCGCGCTAGTCCTCGCGAAGCATGACCCGCC
GATAGTTCTGGCCGTTCCCCCACACGCGCCTACACACTTGAAGTTCGTCC
CAGGAAGACTAGTCGCAGAAACTCGTCAAAAAACTGCGGAAGAGTTCATC
ATGAGCAGATTTGGTAGTACGGGGAGGCGCATCTTCCGAGCATTGGCTTT
GGAAGGTGCTATGGAGGAGAAAATGCTTGCCGAGAAATGTATGCAACCGC
TTAAAGTTGTGCGAGAACATTTGTTTCGTATGTATCAGGATCGTGTCATA
GTCACTCAAGAGGTGCCCCGTTCGAATGACCAGCAACGAGCCAGCAACTG
GTTTTATCTGTGGAAGGTGAACACGTTTTCAATTCACCGCTCTTTACTCG
AGGTGATGTACAAAACTTTGCTAAACCTGTTTCTGCAGTTTGAGATGTTG
GACAAGGACAGCAAAACCCCCGAAGAGCAGAAGAAATTAAGGAATCGCGA
AACGCTTCTTGTTTCCAGTATTCTAAGAGTGGACCAATCCGTCATGGTTA
TGAGAGATTTCGGTCCCATTACTGCCGTGTACTTTCCCTCAAAGTATGAA
GTACTTGATGGGTACATAATACACAGTAAAAAGCGGCGGCGAAGGGTTAC
GTGA
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protein sequence of Ggra1523.t1

>Ggra1523.t1 ID=Ggra1523.t1|Name=Ggra1523.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=568bp
MVRQHEALACAIARYHFKPIVAEVVRLLCLHPGSTLVALARLASPYFEAA
CARSQNQHRVVGDHQRLDFVRDSLAVLCQHGIVLHDELLNLQISKRNPLS
NGASPLFNPRTRIQYYCDVNVLLYRPRIPLYLGFARRRFGEFGHAVLSAL
LERGRLTSAQLFKCTLAPKMAEFGISEAAVQACLIDMVQSGVVHWCGKRK
RRSSLRAKLQIQKEEATVESVGSKRPNPDVVHYDDDYDEDDYDDEDDNRE
RIQIGRGDNMRSVIVPDKDNDIDIWGVCYWHLNREFRNECCLMVVGTRVR
SELCVQILRVGLQIALSREDCQQPSDDMETAEVHTDDIKKGLEEFDLFVS
AQEFWNAALVLAKHDPPIVLAVPPHAPTHLKFVPGRLVAETRQKTAEEFI
MSRFGSTGRRIFRALALEGAMEEKMLAEKCMQPLKVVREHLFRMYQDRVI
VTQEVPRSNDQQRASNWFYLWKVNTFSIHRSLLEVMYKTLLNLFLQFEML
DKDSKTPEEQKKLRNRETLLVSSILRVDQSVMVMRDFGPITAVYFPSKYE
VLDGYIIHSKKRRRRVT*
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mRNA from alignment at tig00000844_pilon:314082..315785+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1523.t1 ID=Ggra1523.t1|Name=Ggra1523.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1704bp|location=Sequence derived from alignment at tig00000844_pilon:314082..315785+ (Gracilaria gracilis GNS1m male)
ATGGTCCGACAGCATGAGGCGCTCGCGTGTGCCATAGCGCGTTATCACTT
CAAGCCCATTGTGGCCGAGGTTGTTCGCCTTCTTTGTCTTCATCCGGGCT
CCACGCTCGTCGCGCTCGCTCGTTTGGCGTCGCCGTACTTCGAGGCCGCT
TGCGCGCGCAGTCAGAATCAACACCGCGTTGTTGGAGATCACCAGCGACT
TGATTTCGTGCGTGATTCGCTCGCCGTGCTGTGTCAGCATGGTATTGTGC
TCCACGACGAGCTGCTTAACTTGCAGATTTCGAAGCGCAATCCGTTGAGC
AATGGCGCTTCACCTCTGTTCAATCCACGCACCCGCATTCAGTATTATTG
CGATGTGAACGTGCTGCTGTATAGACCTCGTATCCCGTTGTATCTTGGCT
TTGCTCGCCGGCGCTTTGGCGAGTTTGGTCATGCTGTTCTCTCTGCTTTG
CTGGAGAGAGGACGACTCACTTCCGCCCAGCTTTTTAAATGCACTTTGGC
CCCAAAGATGGCCGAGTTTGGTATTTCAGAAGCCGCCGTTCAGGCCTGTC
TCATCGACATGGTTCAATCCGGCGTTGTACATTGGTGCGGGAAGCGCAAA
AGACGCTCATCCTTACGGGCCAAACTCCAAATCCAAAAGGAAGAAGCAAC
CGTAGAGTCCGTTGGCTCAAAGCGGCCCAACCCGGATGTTGTGCactacg
acgacgattacgatgaagatgactacgacgatgaggatgacaatCGGGAG
CGTATTCAGATCGGTCGGGGTGATAATATGCGATCCGTCATCGTGCCGGA
CAAGGACAATGACATCGATATCTGGGGTGTGTGTTATTGGCATCTCAATC
GTGAGTTTCGGAATGAATGCTGTCTCATGGTGGTTGGAACTCGCGTTAGA
AGCGAACTATGTGTACAAATATTGCGAGTAGGCTTGCAAATTGCATTGTC
AAGAGAGGATTGTCAACAACCTTCGGATGATATGGAAACCGCTGAGGTCC
ATACGGATGATATCAAGAAGGGCTTAGAAGAGTTTGATTTGTTCGTTAGC
GCACAGGAGTTTTGGAATGCCGCGCTAGTCCTCGCGAAGCATGACCCGCC
GATAGTTCTGGCCGTTCCCCCACACGCGCCTACACACTTGAAGTTCGTCC
CAGGAAGACTAGTCGCAGAAACTCGTCAAAAAACTGCGGAAGAGTTCATC
ATGAGCAGATTTGGTAGTACGGGGAGGCGCATCTTCCGAGCATTGGCTTT
GGAAGGTGCTATGGAGGAGAAAATGCTTGCCGAGAAATGTATGCAACCGC
TTAAAGTTGTGCGAGAACATTTGTTTCGTATGTATCAGGATCGTGTCATA
GTCACTCAAGAGGTGCCCCGTTCGAATGACCAGCAACGAGCCAGCAACTG
GTTTTATCTGTGGAAGGTGAACACGTTTTCAATTCACCGCTCTTTACTCG
AGGTGATGTACAAAACTTTGCTAAACCTGTTTCTGCAGTTTGAGATGTTG
GACAAGGACAGCAAAACCCCCGAAGAGCAGAAGAAATTAAGGAATCGCGA
AACGCTTCTTGTTTCCAGTATTCTAAGAGTGGACCAATCCGTCATGGTTA
TGAGAGATTTCGGTCCCATTACTGCCGTGTACTTTCCCTCAAAGTATGAA
GTACTTGATGGGTACATAATACACAGTAAAAAGCGGCGGCGAAGGGTTAC
GTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:314082..315785+

>Ggra1523.t1 ID=Ggra1523.t1|Name=Ggra1523.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1704bp|location=Sequence derived from alignment at tig00000844_pilon:314082..315785+ (Gracilaria gracilis GNS1m male)
ATGGTCCGACAGCATGAGGCGCTCGCGTGTGCCATAGCGCGTTATCACTT
CAAGCCCATTGTGGCCGAGGTTGTTCGCCTTCTTTGTCTTCATCCGGGCT
CCACGCTCGTCGCGCTCGCTCGTTTGGCGTCGCCGTACTTCGAGGCCGCT
TGCGCGCGCAGTCAGAATCAACACCGCGTTGTTGGAGATCACCAGCGACT
TGATTTCGTGCGTGATTCGCTCGCCGTGCTGTGTCAGCATGGTATTGTGC
TCCACGACGAGCTGCTTAACTTGCAGATTTCGAAGCGCAATCCGTTGAGC
AATGGCGCTTCACCTCTGTTCAATCCACGCACCCGCATTCAGTATTATTG
CGATGTGAACGTGCTGCTGTATAGACCTCGTATCCCGTTGTATCTTGGCT
TTGCTCGCCGGCGCTTTGGCGAGTTTGGTCATGCTGTTCTCTCTGCTTTG
CTGGAGAGAGGACGACTCACTTCCGCCCAGCTTTTTAAATGCACTTTGGC
CCCAAAGATGGCCGAGTTTGGTATTTCAGAAGCCGCCGTTCAGGCCTGTC
TCATCGACATGGTTCAATCCGGCGTTGTACATTGGTGCGGGAAGCGCAAA
AGACGCTCATCCTTACGGGCCAAACTCCAAATCCAAAAGGAAGAAGCAAC
CGTAGAGTCCGTTGGCTCAAAGCGGCCCAACCCGGATGTTGTGCactacg
acgacgattacgatgaagatgactacgacgatgaggatgacaatCGGGAG
CGTATTCAGATCGGTCGGGGTGATAATATGCGATCCGTCATCGTGCCGGA
CAAGGACAATGACATCGATATCTGGGGTGTGTGTTATTGGCATCTCAATC
GTGAGTTTCGGAATGAATGCTGTCTCATGGTGGTTGGAACTCGCGTTAGA
AGCGAACTATGTGTACAAATATTGCGAGTAGGCTTGCAAATTGCATTGTC
AAGAGAGGATTGTCAACAACCTTCGGATGATATGGAAACCGCTGAGGTCC
ATACGGATGATATCAAGAAGGGCTTAGAAGAGTTTGATTTGTTCGTTAGC
GCACAGGAGTTTTGGAATGCCGCGCTAGTCCTCGCGAAGCATGACCCGCC
GATAGTTCTGGCCGTTCCCCCACACGCGCCTACACACTTGAAGTTCGTCC
CAGGAAGACTAGTCGCAGAAACTCGTCAAAAAACTGCGGAAGAGTTCATC
ATGAGCAGATTTGGTAGTACGGGGAGGCGCATCTTCCGAGCATTGGCTTT
GGAAGGTGCTATGGAGGAGAAAATGCTTGCCGAGAAATGTATGCAACCGC
TTAAAGTTGTGCGAGAACATTTGTTTCGTATGTATCAGGATCGTGTCATA
GTCACTCAAGAGGTGCCCCGTTCGAATGACCAGCAACGAGCCAGCAACTG
GTTTTATCTGTGGAAGGTGAACACGTTTTCAATTCACCGCTCTTTACTCG
AGGTGATGTACAAAACTTTGCTAAACCTGTTTCTGCAGTTTGAGATGTTG
GACAAGGACAGCAAAACCCCCGAAGAGCAGAAGAAATTAAGGAATCGCGA
AACGCTTCTTGTTTCCAGTATTCTAAGAGTGGACCAATCCGTCATGGTTA
TGAGAGATTTCGGTCCCATTACTGCCGTGTACTTTCCCTCAAAGTATGAA
GTACTTGATGGGTACATAATACACAGTAAAAAGCGGCGGCGAAGGGTTAC
GTGA
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