Ggra1520.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1520.t1
Unique Name	Ggra1520.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:303985..305133 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	164328.Phyra83105
PFAMs	Glycos_trans_3N,Glycos_transf_3
Max annot lvl	4776\|Peronosporales
KEGG rclass	RC00440
KEGG ko	ko:K00766
KEGG Reaction	R01073
KEGG Pathway	ko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG Module	M00023
Evalue	5.57e-100
EggNOG OGs	COG0547@1\|root,KOG1438@2759\|Eukaryota,3Q7DS@4776\|Peronosporales
EC	2.4.2.18
Description	Glycosyl transferase family, a/b domain
COG category	E
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1520	Ggra1520	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 303985..305133 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1520.t1.start1	Ggra1520.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 303985..303987 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1520.t1.CDS1	Ggra1520.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 303985..305133 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1520.t1.exon1	Ggra1520.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 303985..305133 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1520.t1.stop1	Ggra1520.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 305131..305133 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1520.t1	Ggra1520.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 303985..305133 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:303985..305133+
coding sequence from alignment at tig00000844_pilon:303985..305133+

mRNA sequence

>Ggra1520.t1 ID=Ggra1520.t1|Name=Ggra1520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MTLSQRHRTPSFAGTPSLMQWRRQQATFVQSANARYATRKIVRCSMKPYL
EKLVSMQNLTSTEATEAVRYILSGEATDSEIAAFLAVLAAKGETSDEVFG
TVKAMRSEMVPVSSKYPVLDIVGTGGDGFNTVNISTAASILAAAAGCRVA
KHGNRSVSSKSGSADVLEALGINIQLSSEGVSKCIEEVGIGFMFARLHHP
KMRFVGPVRQALKIRTLFNIIGPLLNPCSAEYAVIGVARPSLLDIMADVL
ISSGVKHGVVVHTAGLDEYSNTGVSSVVEFVNGVKETKTFDPKAELGMPR
VHVSALKGGDAVENASIIRNVLSGKLKGPISDAIILNAAVGCYVYGLDPS
IQAAVERINKVLTSGKATAVLEKWATVSQSTK*

spliced messenger RNA

>Ggra1520.t1 ID=Ggra1520.t1|Name=Ggra1520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000844_pilon:303985..305133+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTGAGCCAGAGGCATCGCACTCCATCGTTTGCAGGGACCCCCTC
CTTGATGCAATGGCGGCGTCAGCAGGCTACATTCGTTCAATCTGCAAACG
CACGTTATGCCACCCGCAAAATCGTCCGATGCTCCATGAAGCCGTATCTT
GAAAAGCTGGTTTCAATGCAAAACCTCACATCGACTGAAGCCACAGAAGC
AGTGAGGTATATCTTGAGTGGTGAGGCAACTGATTCCGAAATCGCTGCAT
TTCTGGCTGTTCTTGCTGCAAAAGGCGAGACATCCGATGAGGTCTTTGGG
ACCGTGAAGGCTATGAGGAGTGAAATGGTTCCCGTGTCTTCAAAATATCC
TGTACTGGACATTGTCGGAACCGGTGGTGATGGTTTCAATACTGTCAACA
TTTCTACTGCTGCATCGATATTAGCAGCTGCGGCGGGATGCAGAGTGGCC
AAACATGGCAACCGCTCTGTTAGTTCCAAGAGCGGTAGTGCGGATGTTCT
AGAGGCACTAGGAATCAATATACAGCTTTCATCTGAAGGAGTTTCAAAAT
GTATAGAAGAAGTTGGAATCGGTTTCATGTTTGCCCGTCTTCATCATCCG
AAAATGCGCTTCGTCGGCCCTGTTCGTCAAGCCTTGAAGATCCGAACCTT
ATTCAATATCATAGGTCCACTTCTTAATCCTTGCAGCGCAGAATACGCGG
TGATCGGTGTAGCCAGACCATCCTTGCTTGATATCATGGCTGACGTTCTA
ATCTCATCTGGTGTGAAACATGGTGTTGTGGTGCATACTGCGGGGTTGGA
TGAGTATAGTAACACAGGGGTATCAAGTGTCGTCGAGTTTGTCAATGGTG
TGAAAGAAACGAAAACATTCGATCCGAAAGCAGAATTGGGAATGCCTCGA
GTGCATGTTTCCGCTCTCAAGGGCGGTGATGCCGTCGAGAATGCTTCCAT
TATTCGAAACGTGCTCTCTGGTAAGTTAAAGGGGCCGATTTCGGATGCCA
TCATTTTGAATGCTGCTGTTGGTTGCTATGTCTACGGTCTTGATCCAAGC
ATTCAAGCCGCCGTGGAACGCATCAACAAAGTGTTGACTTCAGGAAAAGC
AACTGCTGTGCTCGAGAAGTGGGCAACTGTTTCGCAGTCGACGAAGTGA

protein sequence of Ggra1520.t1

>Ggra1520.t1 ID=Ggra1520.t1|Name=Ggra1520.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MTLSQRHRTPSFAGTPSLMQWRRQQATFVQSANARYATRKIVRCSMKPYL
EKLVSMQNLTSTEATEAVRYILSGEATDSEIAAFLAVLAAKGETSDEVFG
TVKAMRSEMVPVSSKYPVLDIVGTGGDGFNTVNISTAASILAAAAGCRVA
KHGNRSVSSKSGSADVLEALGINIQLSSEGVSKCIEEVGIGFMFARLHHP
KMRFVGPVRQALKIRTLFNIIGPLLNPCSAEYAVIGVARPSLLDIMADVL
ISSGVKHGVVVHTAGLDEYSNTGVSSVVEFVNGVKETKTFDPKAELGMPR
VHVSALKGGDAVENASIIRNVLSGKLKGPISDAIILNAAVGCYVYGLDPS
IQAAVERINKVLTSGKATAVLEKWATVSQSTK*

mRNA from alignment at tig00000844_pilon:303985..305133+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1520.t1 ID=Ggra1520.t1|Name=Ggra1520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000844_pilon:303985..305133+ (Gracilaria gracilis GNS1m male)
ATGACATTGAGCCAGAGGCATCGCACTCCATCGTTTGCAGGGACCCCCTC
CTTGATGCAATGGCGGCGTCAGCAGGCTACATTCGTTCAATCTGCAAACG
CACGTTATGCCACCCGCAAAATCGTCCGATGCTCCATGAAGCCGTATCTT
GAAAAGCTGGTTTCAATGCAAAACCTCACATCGACTGAAGCCACAGAAGC
AGTGAGGTATATCTTGAGTGGTGAGGCAACTGATTCCGAAATCGCTGCAT
TTCTGGCTGTTCTTGCTGCAAAAGGCGAGACATCCGATGAGGTCTTTGGG
ACCGTGAAGGCTATGAGGAGTGAAATGGTTCCCGTGTCTTCAAAATATCC
TGTACTGGACATTGTCGGAACCGGTGGTGATGGTTTCAATACTGTCAACA
TTTCTACTGCTGCATCGATATTAGCAGCTGCGGCGGGATGCAGAGTGGCC
AAACATGGCAACCGCTCTGTTAGTTCCAAGAGCGGTAGTGCGGATGTTCT
AGAGGCACTAGGAATCAATATACAGCTTTCATCTGAAGGAGTTTCAAAAT
GTATAGAAGAAGTTGGAATCGGTTTCATGTTTGCCCGTCTTCATCATCCG
AAAATGCGCTTCGTCGGCCCTGTTCGTCAAGCCTTGAAGATCCGAACCTT
ATTCAATATCATAGGTCCACTTCTTAATCCTTGCAGCGCAGAATACGCGG
TGATCGGTGTAGCCAGACCATCCTTGCTTGATATCATGGCTGACGTTCTA
ATCTCATCTGGTGTGAAACATGGTGTTGTGGTGCATACTGCGGGGTTGGA
TGAGTATAGTAACACAGGGGTATCAAGTGTCGTCGAGTTTGTCAATGGTG
TGAAAGAAACGAAAACATTCGATCCGAAAGCAGAATTGGGAATGCCTCGA
GTGCATGTTTCCGCTCTCAAGGGCGGTGATGCCGTCGAGAATGCTTCCAT
TATTCGAAACGTGCTCTCTGGTAAGTTAAAGGGGCCGATTTCGGATGCCA
TCATTTTGAATGCTGCTGTTGGTTGCTATGTCTACGGTCTTGATCCAAGC
ATTCAAGCCGCCGTGGAACGCATCAACAAAGTGTTGACTTCAGGAAAAGC
AACTGCTGTGCTCGAGAAGTGGGCAACTGTTTCGCAGTCGACGAAGTGA

Coding sequence (CDS) from alignment at tig00000844_pilon:303985..305133+

>Ggra1520.t1 ID=Ggra1520.t1|Name=Ggra1520.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000844_pilon:303985..305133+ (Gracilaria gracilis GNS1m male)
ATGACATTGAGCCAGAGGCATCGCACTCCATCGTTTGCAGGGACCCCCTC
CTTGATGCAATGGCGGCGTCAGCAGGCTACATTCGTTCAATCTGCAAACG
CACGTTATGCCACCCGCAAAATCGTCCGATGCTCCATGAAGCCGTATCTT
GAAAAGCTGGTTTCAATGCAAAACCTCACATCGACTGAAGCCACAGAAGC
AGTGAGGTATATCTTGAGTGGTGAGGCAACTGATTCCGAAATCGCTGCAT
TTCTGGCTGTTCTTGCTGCAAAAGGCGAGACATCCGATGAGGTCTTTGGG
ACCGTGAAGGCTATGAGGAGTGAAATGGTTCCCGTGTCTTCAAAATATCC
TGTACTGGACATTGTCGGAACCGGTGGTGATGGTTTCAATACTGTCAACA
TTTCTACTGCTGCATCGATATTAGCAGCTGCGGCGGGATGCAGAGTGGCC
AAACATGGCAACCGCTCTGTTAGTTCCAAGAGCGGTAGTGCGGATGTTCT
AGAGGCACTAGGAATCAATATACAGCTTTCATCTGAAGGAGTTTCAAAAT
GTATAGAAGAAGTTGGAATCGGTTTCATGTTTGCCCGTCTTCATCATCCG
AAAATGCGCTTCGTCGGCCCTGTTCGTCAAGCCTTGAAGATCCGAACCTT
ATTCAATATCATAGGTCCACTTCTTAATCCTTGCAGCGCAGAATACGCGG
TGATCGGTGTAGCCAGACCATCCTTGCTTGATATCATGGCTGACGTTCTA
ATCTCATCTGGTGTGAAACATGGTGTTGTGGTGCATACTGCGGGGTTGGA
TGAGTATAGTAACACAGGGGTATCAAGTGTCGTCGAGTTTGTCAATGGTG
TGAAAGAAACGAAAACATTCGATCCGAAAGCAGAATTGGGAATGCCTCGA
GTGCATGTTTCCGCTCTCAAGGGCGGTGATGCCGTCGAGAATGCTTCCAT
TATTCGAAACGTGCTCTCTGGTAAGTTAAAGGGGCCGATTTCGGATGCCA
TCATTTTGAATGCTGCTGTTGGTTGCTATGTCTACGGTCTTGATCCAAGC
ATTCAAGCCGCCGTGGAACGCATCAACAAAGTGTTGACTTCAGGAAAAGC
AACTGCTGTGCTCGAGAAGTGGGCAACTGTTTCGCAGTCGACGAAGTGA