Ggra1519.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1519.t1
Unique NameGgra1519.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length351
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:302281..303333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog34349.G7E319
PFAMsBPL_LplA_LipB,Lip_prot_lig_C
Max annot lvl4751|Fungi
KEGG rclassRC00043,RC00070,RC00090,RC00992,RC02896
KEGG koko:K03800
KEGG ReactionR07770,R07771,R11143
KEGG Pathwayko00785,ko01100,map00785,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009249,GO:0009987,GO:0010467,GO:0016740,GO:0016772,GO:0016779,GO:0016874,GO:0016879,GO:0016979,GO:0018065,GO:0018193,GO:0018205,GO:0019538,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0071704,GO:0140096,GO:1901564
Evalue8.12e-42
EggNOG OGsCOG0095@1|root,KOG3159@2759|Eukaryota,38IBB@33154|Opisthokonta,3NTYI@4751|Fungi,3UZA8@5204|Basidiomycota,2YDYT@29000|Pucciniomycotina
EC6.3.1.20
Descriptionlipoyltransferase and lipoate-protein ligase
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1519Ggra1519Gracilaria gracilis GNS1m malegenetig00000844_pilon 302281..303333 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1519.t1.stop1Ggra1519.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 302281..302283 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1519.t1.CDS1Ggra1519.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 302281..303333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1519.t1.exon1Ggra1519.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 302281..303333 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1519.t1.start1Ggra1519.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 303331..303333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1519.t1Ggra1519.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 302281..303333 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1519.t1 ID=Ggra1519.t1|Name=Ggra1519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp
MMNSTRVLFLRSRNAFSNLAAEELLLQASTEHTLLFYVNAPCVILGRTQN
AFKEADVSYAKDEQVSIMRRRSGGGTVVHDEGNLNFCWMTSRDEYSPLKA
ASMITEVLQSDFNINSASVNERADILVDGMKVSGAAYRITGKRAYHHGTL
LVDSDLARLSRVLRSPLRDELHASGMQSVRSKVTNISMHQAVTAEQLMKA
VATRFSGNSSIEELNPFELEDFRKQRNELSSHAWVYGQTPRFHYEAQVDS
DTHMTLYAKKGGTIENAVVKTSVEDVEDDLRHAVVECPFDGAVLAHGIRT
QVESGGVKGTFFMRIADFVEEHVPQQFWRSERDEIHLDDEEPYDAPSSSR
*
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spliced messenger RNA

>Ggra1519.t1 ID=Ggra1519.t1|Name=Ggra1519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:302281..303333- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAATAGCACTCGCGTGTTGTTTCTAAGGTCAAGGAATGCGTTTTC
AAACTTGGCGGCGGAAGAACTTCTGTTACAGGCTTCCACCGAACATACAC
TGCTTTTCTACGTTAACGCTCCATGTGTGATCCTAGGACGTACGCAAAAC
GCTTTCAAAGAGGCAGATGTATCGTACGCAAAAGACGAACAAGTGTCTAT
CATGAGACGTCGATCAGGGGGCGGGACTGTTGTACACGACGAAGGAAATC
TAAATTTCTGTTGGATGACTTCAAGAGATGAGTACAGTCCGCTTAAAGCG
GCGTCAATGATTACGGAAGTACTTCAAAGTGATTTCAATATCAACAGCGC
ATCAGTTAATGAACGCGCTGATATTCTTGTGGACGGGATGAAAGTTTCTG
GAGCGGCGTACCGCATCACTGGTAAACGAGCTTACCATCATGGTACTTTG
TTGGTGGACTCGGATCTTGCACGATTGTCAAGAGTACTTCGATCACCTCT
ACGTGATGAATTGCATGCTAGTGGTATGCAAAGCGTTCGCTCGAAAGTTA
CAAACATATCGATGCATCAAGCTGTGACAGCGGAACAGTTGATGAAGGCA
GTGGCAACTCGCTTCTCAGGCAATTCAAGCATTGAAGAACTTAATCCTTT
TGAGCTGGAAGATTTCCGTAAGCAACGAAATGAGCTTAGTAGTCACGCGT
GGGTGTACGGACAAACGCCTCGCTTTCACTATGAGGCACAGGTCGATTCC
GACACACATATGACGTTGTACGCTAAGAAGGGTGGCACTATTGAGAACGC
GGTAGTGAAGACTTCAGTTGAAGACGTAGAAGATGACTTGCGACACGCCG
TGGTGGAATGCCCGTTTGACGGGGCGGTTTTGGCGCATGGAATTCGGACA
CAGGTGGAGAGTGGCGGCGTGAAAGGAACGTTTTTCATGCGGATAGCTGA
CTTTGTCGAAGAACACGTTCCGCAGCAGTTTTGGAGGAGCGAAAGGGATG
AGATACACCTGGACGACGAAGAACCATACGACGCTCCATCGTCTTCAAGA
TGA
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protein sequence of Ggra1519.t1

>Ggra1519.t1 ID=Ggra1519.t1|Name=Ggra1519.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=351bp
MMNSTRVLFLRSRNAFSNLAAEELLLQASTEHTLLFYVNAPCVILGRTQN
AFKEADVSYAKDEQVSIMRRRSGGGTVVHDEGNLNFCWMTSRDEYSPLKA
ASMITEVLQSDFNINSASVNERADILVDGMKVSGAAYRITGKRAYHHGTL
LVDSDLARLSRVLRSPLRDELHASGMQSVRSKVTNISMHQAVTAEQLMKA
VATRFSGNSSIEELNPFELEDFRKQRNELSSHAWVYGQTPRFHYEAQVDS
DTHMTLYAKKGGTIENAVVKTSVEDVEDDLRHAVVECPFDGAVLAHGIRT
QVESGGVKGTFFMRIADFVEEHVPQQFWRSERDEIHLDDEEPYDAPSSSR
*
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mRNA from alignment at tig00000844_pilon:302281..303333-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1519.t1 ID=Ggra1519.t1|Name=Ggra1519.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:302281..303333- (Gracilaria gracilis GNS1m male)
ATGATGAATAGCACTCGCGTGTTGTTTCTAAGGTCAAGGAATGCGTTTTC
AAACTTGGCGGCGGAAGAACTTCTGTTACAGGCTTCCACCGAACATACAC
TGCTTTTCTACGTTAACGCTCCATGTGTGATCCTAGGACGTACGCAAAAC
GCTTTCAAAGAGGCAGATGTATCGTACGCAAAAGACGAACAAGTGTCTAT
CATGAGACGTCGATCAGGGGGCGGGACTGTTGTACACGACGAAGGAAATC
TAAATTTCTGTTGGATGACTTCAAGAGATGAGTACAGTCCGCTTAAAGCG
GCGTCAATGATTACGGAAGTACTTCAAAGTGATTTCAATATCAACAGCGC
ATCAGTTAATGAACGCGCTGATATTCTTGTGGACGGGATGAAAGTTTCTG
GAGCGGCGTACCGCATCACTGGTAAACGAGCTTACCATCATGGTACTTTG
TTGGTGGACTCGGATCTTGCACGATTGTCAAGAGTACTTCGATCACCTCT
ACGTGATGAATTGCATGCTAGTGGTATGCAAAGCGTTCGCTCGAAAGTTA
CAAACATATCGATGCATCAAGCTGTGACAGCGGAACAGTTGATGAAGGCA
GTGGCAACTCGCTTCTCAGGCAATTCAAGCATTGAAGAACTTAATCCTTT
TGAGCTGGAAGATTTCCGTAAGCAACGAAATGAGCTTAGTAGTCACGCGT
GGGTGTACGGACAAACGCCTCGCTTTCACTATGAGGCACAGGTCGATTCC
GACACACATATGACGTTGTACGCTAAGAAGGGTGGCACTATTGAGAACGC
GGTAGTGAAGACTTCAGTTGAAGACGTAGAAGATGACTTGCGACACGCCG
TGGTGGAATGCCCGTTTGACGGGGCGGTTTTGGCGCATGGAATTCGGACA
CAGGTGGAGAGTGGCGGCGTGAAAGGAACGTTTTTCATGCGGATAGCTGA
CTTTGTCGAAGAACACGTTCCGCAGCAGTTTTGGAGGAGCGAAAGGGATG
AGATACACCTGGACGACGAAGAACCATACGACGCTCCATCGTCTTCAAGA
TGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:302281..303333-

>Ggra1519.t1 ID=Ggra1519.t1|Name=Ggra1519.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000844_pilon:302281..303333- (Gracilaria gracilis GNS1m male)
ATGATGAATAGCACTCGCGTGTTGTTTCTAAGGTCAAGGAATGCGTTTTC
AAACTTGGCGGCGGAAGAACTTCTGTTACAGGCTTCCACCGAACATACAC
TGCTTTTCTACGTTAACGCTCCATGTGTGATCCTAGGACGTACGCAAAAC
GCTTTCAAAGAGGCAGATGTATCGTACGCAAAAGACGAACAAGTGTCTAT
CATGAGACGTCGATCAGGGGGCGGGACTGTTGTACACGACGAAGGAAATC
TAAATTTCTGTTGGATGACTTCAAGAGATGAGTACAGTCCGCTTAAAGCG
GCGTCAATGATTACGGAAGTACTTCAAAGTGATTTCAATATCAACAGCGC
ATCAGTTAATGAACGCGCTGATATTCTTGTGGACGGGATGAAAGTTTCTG
GAGCGGCGTACCGCATCACTGGTAAACGAGCTTACCATCATGGTACTTTG
TTGGTGGACTCGGATCTTGCACGATTGTCAAGAGTACTTCGATCACCTCT
ACGTGATGAATTGCATGCTAGTGGTATGCAAAGCGTTCGCTCGAAAGTTA
CAAACATATCGATGCATCAAGCTGTGACAGCGGAACAGTTGATGAAGGCA
GTGGCAACTCGCTTCTCAGGCAATTCAAGCATTGAAGAACTTAATCCTTT
TGAGCTGGAAGATTTCCGTAAGCAACGAAATGAGCTTAGTAGTCACGCGT
GGGTGTACGGACAAACGCCTCGCTTTCACTATGAGGCACAGGTCGATTCC
GACACACATATGACGTTGTACGCTAAGAAGGGTGGCACTATTGAGAACGC
GGTAGTGAAGACTTCAGTTGAAGACGTAGAAGATGACTTGCGACACGCCG
TGGTGGAATGCCCGTTTGACGGGGCGGTTTTGGCGCATGGAATTCGGACA
CAGGTGGAGAGTGGCGGCGTGAAAGGAACGTTTTTCATGCGGATAGCTGA
CTTTGTCGAAGAACACGTTCCGCAGCAGTTTTGGAGGAGCGAAAGGGATG
AGATACACCTGGACGACGAAGAACCATACGACGCTCCATCGTCTTCAAGA
TGA
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