Ggra1517.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1517.t1
Unique Name	Ggra1517.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	307

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:299397..300317 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705360.1
PFAMs	PseudoU_synth_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06173
Evalue	4.82e-72
EggNOG OGs	COG0101@1\|root,KOG4393@2759\|Eukaryota
EC	5.4.99.12
Description	pseudouridine synthase activity
COG category	J
BRITE	ko00000,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1517	Ggra1517	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 299397..300317 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1517.t1.start1	Ggra1517.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 299397..299399 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1517.t1.CDS1	Ggra1517.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 299397..300317 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1517.t1.exon1	Ggra1517.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 299397..300317 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1517.t1.stop1	Ggra1517.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 300315..300317 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1517.t1	Ggra1517.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 299397..300317 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:299397..300317+
coding sequence from alignment at tig00000844_pilon:299397..300317+

mRNA sequence

>Ggra1517.t1 ID=Ggra1517.t1|Name=Ggra1517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MSSTTGTNSRSQKCPTKRFRARVAYDGTRYKGWQFQYECRSIQGELEKAI
QRRVGELVRVVGASRTDSGVHARGQGMHFDIPEELASREAKDMQKFQFTL
NQILPNDVRLTCLEMAPMVTHNAIPMFKQASAITSRDVKLRPWHSIYCST
GKLYTYRFSIAKYLDPMQRLYRYHEWRAAKFGFSEDMLREATKKFVGSHD
FSAFTNASSPPPGITPPVRVNPIRTIWSADVVHEGEDMYRIEFRINGALY
RMIRNIMGTILAVSCGQLEISTVDKFFESRDRRITPKSAPAHGLCLEQVF
YDDWDI*

spliced messenger RNA

>Ggra1517.t1 ID=Ggra1517.t1|Name=Ggra1517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000844_pilon:299397..300317+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCCACAACTGGGACAAATTCAAGATCCCAAAAATGTCCGACAAA
GCGTTTCCGTGCTCGTGTAGCGTACGACGGCACACGCTATAAGGGTTGGC
AGTTTCAATACGAATGTCGCTCTATACAGGGTGAATTGGAGAAAGCCATA
CAGCGTAGAGTTGGGGAGCTAGTACGGGTGGTCGGGGCAAGCCGAACTGA
TAGCGGTGTACATGCAAGAGGACAGGGTATGCATTTTGACATTCCCGAGG
AACTAGCTTCAAGAGAAGCTAAAGATATGCAAAAGTTCCAATTCACTTTA
AACCAAATACTGCCGAACGATGTCAGACTCACCTGTTTGGAAATGGCGCC
GATGGTTACGCATAATGCGATACCAATGTTTAAGCAGGCATCGGCAATCA
CTTCGCGCGATGTGAAGCTCCGGCCATGGCATTCTATTTATTGTTCTACC
GGGAAACTCTACACATACCGCTTTTCTATCGCAAAGTATCTGGATCCGAT
GCAGCGGTTATATAGGTACCATGAGTGGAGAGCGGCAAAATTTGGGTTCT
CAGAGGACATGCTACGGGAGGCAACGAAGAAATTTGTGGGATCTCATGAC
TTTTCAGCGTTTACCAACGCCAGTAGCCCACCGCCGGGGATTACTCCTCC
CGTGCGGGTGAATCCAATTCGAACAATTTGGTCAGCTGATGTTGTACATG
AAGGGGAAGATATGTATCGGATTGAGTTTCGAATAAACGGTGCGTTGTAC
AGGATGATTCGAAACATTATGGGAACCATTCTCGCCGTTAGTTGCGGTCA
GCTAGAAATATCAACCGTCGACAAGTTTTTTGAATCGCGAGATAGACGGA
TTACTCCAAAGAGTGCTCCAGCCCATGGACTTTGTCTTGAACAGGTGTTT
TACGATGACTGGGATATTTAG

protein sequence of Ggra1517.t1

>Ggra1517.t1 ID=Ggra1517.t1|Name=Ggra1517.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MSSTTGTNSRSQKCPTKRFRARVAYDGTRYKGWQFQYECRSIQGELEKAI
QRRVGELVRVVGASRTDSGVHARGQGMHFDIPEELASREAKDMQKFQFTL
NQILPNDVRLTCLEMAPMVTHNAIPMFKQASAITSRDVKLRPWHSIYCST
GKLYTYRFSIAKYLDPMQRLYRYHEWRAAKFGFSEDMLREATKKFVGSHD
FSAFTNASSPPPGITPPVRVNPIRTIWSADVVHEGEDMYRIEFRINGALY
RMIRNIMGTILAVSCGQLEISTVDKFFESRDRRITPKSAPAHGLCLEQVF
YDDWDI*

mRNA from alignment at tig00000844_pilon:299397..300317+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1517.t1 ID=Ggra1517.t1|Name=Ggra1517.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000844_pilon:299397..300317+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCACAACTGGGACAAATTCAAGATCCCAAAAATGTCCGACAAA
GCGTTTCCGTGCTCGTGTAGCGTACGACGGCACACGCTATAAGGGTTGGC
AGTTTCAATACGAATGTCGCTCTATACAGGGTGAATTGGAGAAAGCCATA
CAGCGTAGAGTTGGGGAGCTAGTACGGGTGGTCGGGGCAAGCCGAACTGA
TAGCGGTGTACATGCAAGAGGACAGGGTATGCATTTTGACATTCCCGAGG
AACTAGCTTCAAGAGAAGCTAAAGATATGCAAAAGTTCCAATTCACTTTA
AACCAAATACTGCCGAACGATGTCAGACTCACCTGTTTGGAAATGGCGCC
GATGGTTACGCATAATGCGATACCAATGTTTAAGCAGGCATCGGCAATCA
CTTCGCGCGATGTGAAGCTCCGGCCATGGCATTCTATTTATTGTTCTACC
GGGAAACTCTACACATACCGCTTTTCTATCGCAAAGTATCTGGATCCGAT
GCAGCGGTTATATAGGTACCATGAGTGGAGAGCGGCAAAATTTGGGTTCT
CAGAGGACATGCTACGGGAGGCAACGAAGAAATTTGTGGGATCTCATGAC
TTTTCAGCGTTTACCAACGCCAGTAGCCCACCGCCGGGGATTACTCCTCC
CGTGCGGGTGAATCCAATTCGAACAATTTGGTCAGCTGATGTTGTACATG
AAGGGGAAGATATGTATCGGATTGAGTTTCGAATAAACGGTGCGTTGTAC
AGGATGATTCGAAACATTATGGGAACCATTCTCGCCGTTAGTTGCGGTCA
GCTAGAAATATCAACCGTCGACAAGTTTTTTGAATCGCGAGATAGACGGA
TTACTCCAAAGAGTGCTCCAGCCCATGGACTTTGTCTTGAACAGGTGTTT
TACGATGACTGGGATATTTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:299397..300317+

>Ggra1517.t1 ID=Ggra1517.t1|Name=Ggra1517.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000844_pilon:299397..300317+ (Gracilaria gracilis GNS1m male)
ATGTCGTCCACAACTGGGACAAATTCAAGATCCCAAAAATGTCCGACAAA
GCGTTTCCGTGCTCGTGTAGCGTACGACGGCACACGCTATAAGGGTTGGC
AGTTTCAATACGAATGTCGCTCTATACAGGGTGAATTGGAGAAAGCCATA
CAGCGTAGAGTTGGGGAGCTAGTACGGGTGGTCGGGGCAAGCCGAACTGA
TAGCGGTGTACATGCAAGAGGACAGGGTATGCATTTTGACATTCCCGAGG
AACTAGCTTCAAGAGAAGCTAAAGATATGCAAAAGTTCCAATTCACTTTA
AACCAAATACTGCCGAACGATGTCAGACTCACCTGTTTGGAAATGGCGCC
GATGGTTACGCATAATGCGATACCAATGTTTAAGCAGGCATCGGCAATCA
CTTCGCGCGATGTGAAGCTCCGGCCATGGCATTCTATTTATTGTTCTACC
GGGAAACTCTACACATACCGCTTTTCTATCGCAAAGTATCTGGATCCGAT
GCAGCGGTTATATAGGTACCATGAGTGGAGAGCGGCAAAATTTGGGTTCT
CAGAGGACATGCTACGGGAGGCAACGAAGAAATTTGTGGGATCTCATGAC
TTTTCAGCGTTTACCAACGCCAGTAGCCCACCGCCGGGGATTACTCCTCC
CGTGCGGGTGAATCCAATTCGAACAATTTGGTCAGCTGATGTTGTACATG
AAGGGGAAGATATGTATCGGATTGAGTTTCGAATAAACGGTGCGTTGTAC
AGGATGATTCGAAACATTATGGGAACCATTCTCGCCGTTAGTTGCGGTCA
GCTAGAAATATCAACCGTCGACAAGTTTTTTGAATCGCGAGATAGACGGA
TTACTCCAAAGAGTGCTCCAGCCCATGGACTTTGTCTTGAACAGGTGTTT
TACGATGACTGGGATATTTAG