Ggra1516.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1516.t1
Unique NameGgra1516.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:297790..298683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706292.1
Preferred nameEIF2S2
PFAMseIF-5_eIF-2B
Max annot lvl2759|Eukaryota
KEGG koko:K03238
KEGG Pathwayko03013,map03013
GOsGO:0000003,GO:0000122,GO:0000902,GO:0000904,GO:0001701,GO:0001731,GO:0002176,GO:0002181,GO:0002183,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005850,GO:0006355,GO:0006357,GO:0006412,GO:0006413,GO:0006518,GO:0006807,GO:0006810,GO:0006928,GO:0006935,GO:0006950,GO:0007275,GO:0007276,GO:0007399,GO:0007409,GO:0007411,GO:0007548,GO:0007568,GO:0008037,GO:0008038,GO:0008135,GO:0008150,GO:0008152,GO:0008283,GO:0008340,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016198,GO:0016199,GO:0016282,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031369,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034976,GO:0036093,GO:0040008,GO:0040011,GO:0040014,GO:0042221,GO:0042330,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045137,GO:0045892,GO:0045934,GO:0046546,GO:0046661,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051239,GO:0051252,GO:0051253,GO:0051704,GO:0051716,GO:0055085,GO:0060255,GO:0061458,GO:0061564,GO:0065003,GO:0065007,GO:0070993,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097485,GO:0120036,GO:0120039,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Evalue5.13e-79
EggNOG OGsCOG1601@1|root,KOG2768@2759|Eukaryota
Descriptiontranslation initiation factor activity
COG categoryJ
BRITEko00000,ko00001,ko01009,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1516Ggra1516Gracilaria gracilis GNS1m malegenetig00000844_pilon 297790..298683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1516.t1.stop1Ggra1516.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 297790..297792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1516.t1.CDS1Ggra1516.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 297790..298683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1516.t1.exon1Ggra1516.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 297790..298683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1516.t1.start1Ggra1516.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 298681..298683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1516.t1Ggra1516.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 297790..298683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1516.t1 ID=Ggra1516.t1|Name=Ggra1516.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MAGETPENLAVQPNTENKMEDAAAVPSFDLSKKKKKKKPKASTAPATDAS
KVNEATNGVAGMAINDDVNMNSDSPFASTVEEPLDFALPDFTGNKKKKKT
KVFFDDDGDTETGNSRETAEGTSRRDVQPQPWDGTDRDYTYSELINRAFQ
FLHGKNPALASGGPVRKKVSLQLPQVAREGTKKTVFLNFGSICKSIHRQQ
EHLLNYIGAELGTTSNIQDGGRLVIKGRFGAEGIANVLKKYMLEYVICTS
CRSPDTVLMRDANTRLYFVSCESCGAKRSVAPIRQGFMAQVERRKRR*
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spliced messenger RNA

>Ggra1516.t1 ID=Ggra1516.t1|Name=Ggra1516.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000844_pilon:297790..298683- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGCGAGACTCCAGAGAACCTTGCCGTCCAACCCAACACGGAGAA
CAAGATGGAGGATGCTGCGGCAGTTCCTTCCTTCGACCTCTCCAAGAAGA
AGAAGAAGAAGAAGCCGAAGGCGTCGACGGCGCCCGCTACTGACGCTTCT
AAGGTCAACGAAGCCACAAACGGCGTCGCAGGAATGGCCATAAATGATGA
CGTCAATATGAATTCTGATTCGCCTTTTGCCTCCACCGTGGAGGAGCCCC
TCGACTTTGCGCTCCCTGACTTCACAGGCAATAAGAAAAAGAAGAAGACG
AAGGTCTTCTTCGACGACGACGGTGACACTGAGACCGGCAATTCTCGGGA
AACTGCTGAAGGAACATCGCGTCGTGACGTGCAACCGCAACCATGGGACG
GGACCGATCGCGACTACACCTACTCGGAACTCATTAACCGTGCTTTCCAG
TTTTTGCACGGTAAGAATCCTGCTTTAGCAAGTGGTGGCCCGGTAAGAAA
GAAGGTTTCTTTACAGCTTCCTCAAGTTGCGCGAGAAGGAACCAAGAAAA
CGGTATTCCTCAACTTTGGATCAATTTGTAAGAGCATTCATCGTCAACAA
GAGCATTTGCTCAACTACATCGGAGCTGAGCTCGGTACAACAAGTAATAT
CCAGGACGGTGGTAGGCTTGTTATCAAGGGACGCTTTGGTGCTGAGGGTA
TTGCGAACGTGCTTAAGAAGTACATGCTCGAATATGTGATCTGTACTTCG
TGTCGATCGCCTGATACGGTGTTGATGCGAGACGCCAATACTCGACTATA
TTTCGTATCGTGTGAGAGTTGTGGTGCGAAGCGCTCTGTTGCGCCGATTA
GGCAAGGATTTATGGCGCAAGTGGAGCGACGTAAGAGGAGGTAA
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protein sequence of Ggra1516.t1

>Ggra1516.t1 ID=Ggra1516.t1|Name=Ggra1516.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MAGETPENLAVQPNTENKMEDAAAVPSFDLSKKKKKKKPKASTAPATDAS
KVNEATNGVAGMAINDDVNMNSDSPFASTVEEPLDFALPDFTGNKKKKKT
KVFFDDDGDTETGNSRETAEGTSRRDVQPQPWDGTDRDYTYSELINRAFQ
FLHGKNPALASGGPVRKKVSLQLPQVAREGTKKTVFLNFGSICKSIHRQQ
EHLLNYIGAELGTTSNIQDGGRLVIKGRFGAEGIANVLKKYMLEYVICTS
CRSPDTVLMRDANTRLYFVSCESCGAKRSVAPIRQGFMAQVERRKRR*
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mRNA from alignment at tig00000844_pilon:297790..298683-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1516.t1 ID=Ggra1516.t1|Name=Ggra1516.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000844_pilon:297790..298683- (Gracilaria gracilis GNS1m male)
ATGGCAGGCGAGACTCCAGAGAACCTTGCCGTCCAACCCAACACGGAGAA
CAAGATGGAGGATGCTGCGGCAGTTCCTTCCTTCGACCTCTCCAAGAAGA
AGAAGAAGAAGAAGCCGAAGGCGTCGACGGCGCCCGCTACTGACGCTTCT
AAGGTCAACGAAGCCACAAACGGCGTCGCAGGAATGGCCATAAATGATGA
CGTCAATATGAATTCTGATTCGCCTTTTGCCTCCACCGTGGAGGAGCCCC
TCGACTTTGCGCTCCCTGACTTCACAGGCAATAAGAAAAAGAAGAAGACG
AAGGTCTTCTTCGACGACGACGGTGACACTGAGACCGGCAATTCTCGGGA
AACTGCTGAAGGAACATCGCGTCGTGACGTGCAACCGCAACCATGGGACG
GGACCGATCGCGACTACACCTACTCGGAACTCATTAACCGTGCTTTCCAG
TTTTTGCACGGTAAGAATCCTGCTTTAGCAAGTGGTGGCCCGGTAAGAAA
GAAGGTTTCTTTACAGCTTCCTCAAGTTGCGCGAGAAGGAACCAAGAAAA
CGGTATTCCTCAACTTTGGATCAATTTGTAAGAGCATTCATCGTCAACAA
GAGCATTTGCTCAACTACATCGGAGCTGAGCTCGGTACAACAAGTAATAT
CCAGGACGGTGGTAGGCTTGTTATCAAGGGACGCTTTGGTGCTGAGGGTA
TTGCGAACGTGCTTAAGAAGTACATGCTCGAATATGTGATCTGTACTTCG
TGTCGATCGCCTGATACGGTGTTGATGCGAGACGCCAATACTCGACTATA
TTTCGTATCGTGTGAGAGTTGTGGTGCGAAGCGCTCTGTTGCGCCGATTA
GGCAAGGATTTATGGCGCAAGTGGAGCGACGTAAGAGGAGGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:297790..298683-

>Ggra1516.t1 ID=Ggra1516.t1|Name=Ggra1516.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000844_pilon:297790..298683- (Gracilaria gracilis GNS1m male)
ATGGCAGGCGAGACTCCAGAGAACCTTGCCGTCCAACCCAACACGGAGAA
CAAGATGGAGGATGCTGCGGCAGTTCCTTCCTTCGACCTCTCCAAGAAGA
AGAAGAAGAAGAAGCCGAAGGCGTCGACGGCGCCCGCTACTGACGCTTCT
AAGGTCAACGAAGCCACAAACGGCGTCGCAGGAATGGCCATAAATGATGA
CGTCAATATGAATTCTGATTCGCCTTTTGCCTCCACCGTGGAGGAGCCCC
TCGACTTTGCGCTCCCTGACTTCACAGGCAATAAGAAAAAGAAGAAGACG
AAGGTCTTCTTCGACGACGACGGTGACACTGAGACCGGCAATTCTCGGGA
AACTGCTGAAGGAACATCGCGTCGTGACGTGCAACCGCAACCATGGGACG
GGACCGATCGCGACTACACCTACTCGGAACTCATTAACCGTGCTTTCCAG
TTTTTGCACGGTAAGAATCCTGCTTTAGCAAGTGGTGGCCCGGTAAGAAA
GAAGGTTTCTTTACAGCTTCCTCAAGTTGCGCGAGAAGGAACCAAGAAAA
CGGTATTCCTCAACTTTGGATCAATTTGTAAGAGCATTCATCGTCAACAA
GAGCATTTGCTCAACTACATCGGAGCTGAGCTCGGTACAACAAGTAATAT
CCAGGACGGTGGTAGGCTTGTTATCAAGGGACGCTTTGGTGCTGAGGGTA
TTGCGAACGTGCTTAAGAAGTACATGCTCGAATATGTGATCTGTACTTCG
TGTCGATCGCCTGATACGGTGTTGATGCGAGACGCCAATACTCGACTATA
TTTCGTATCGTGTGAGAGTTGTGGTGCGAAGCGCTCTGTTGCGCCGATTA
GGCAAGGATTTATGGCGCAAGTGGAGCGACGTAAGAGGAGGTAA
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