Ggra1515.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1515.t1
Unique NameGgra1515.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length495
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:296152..297636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog588596.U9TPM7
Preferred nameRSM22
PFAMsRsm22
Max annot lvl4751|Fungi
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0031974,GO:0032543,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Evalue9.16e-34
EggNOG OGsCOG5459@1|root,KOG2539@2759|Eukaryota,38DHU@33154|Opisthokonta,3NY5I@4751|Fungi
Description37S ribosomal protein RSM22
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1515Ggra1515Gracilaria gracilis GNS1m malegenetig00000844_pilon 296152..297636 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1515.t1.start1Ggra1515.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 296152..296154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1515.t1.CDS1Ggra1515.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 296152..297636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1515.t1.exon1Ggra1515.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 296152..297636 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1515.t1.stop1Ggra1515.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 297634..297636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1515.t1Ggra1515.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 296152..297636 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1515.t1 ID=Ggra1515.t1|Name=Ggra1515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MIARSVSSFSNLRLFCSPHRLLSSSVLHHTNDAEQNTSIPVPSEFASQSY
RRVPNSPTLPLEAVAVPKTVQAQVHSLIKEKKLSAKHIRKHVKALSLARA
PDFFRRRKSVAQKGQPHIQPPLKYTDAEAVSYTALRMPATLASNVYIMAE
IRRLMPHFAPASILDFGTGAGVSVMAATRSFPSAAHDDSTSSIRDACLID
QASPMLKVAGKLLSVDPNAASTDIKYAASPNEHTLRGESYDIVCASYSLN
EIVRRAMANPQDSSHSNDQTEERAPVRRENRVKVAEKLLRRTIKSLWART
KLGGLFLVIEDGTAAGFETVSYAREVILTLNPKQEAIENDSETLSTGDEA
QQTTGKVIAPCLHSRTCPLKDSITRHRVCRFQQRLNRPLFSRNADPLPTG
YEDEYFSFIAIQKIPQNSNTTTEDEAAGWGRLIRAPLLRTKHIAIDVCTS
EGNLERRVVSKKNARPGQFSQARRSKWGDIWPEEPSSKSQTLNF*
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spliced messenger RNA

>Ggra1515.t1 ID=Ggra1515.t1|Name=Ggra1515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000844_pilon:296152..297636+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGCACGTTCGGTATCCAGCTTTTCCAACTTGAGACTCTTCTGTTC
GCCTCACCGTCTGTTATCTTCGTCAGTACTGCACCACACCAATGACGCGG
AACAGAACACATCAATTCCAGTTCCGTCCGAGTTCGCCTCCCAATCGTAT
CGTCGGGTGCCCAACTCTCCTACCCTACCACTAGAAGCTGTGGCAGTCCC
TAAAACTGTACAAGCCCAAGTTCATTCTCTCATCAAAGAAAAAAAACTCT
CTGCCAAGCACATCAGGAAACATGTCAAAGCACTGTCGCTTGCGAGGGCT
CCGGACTTTTTTCGACGACGGAAATCAGTTGCGCAGAAAGGTCAGCCTCA
TATTCAACCTCCGTTGAAGTACACTGATGCTGAAGCAGTTTCCTATACTG
CTCTGAGAATGCCTGCTACACTTGCATCCAATGTTTACATCATGGCCGAG
ATACGTCGCTTGATGCCCCACTTTGCTCCCGCCAGTATTCTTGACTTTGG
CACTGGGGCTGGCGTCTCTGTGATGGCTGCAACCCGATCATTTCCTTCCG
CTGCACATGATGATTCCACTTCAAGTATTCGCGATGCCTGCTTAATAGAT
CAAGCATCACCAATGCTGAAGGTTGCAGGAAAGCTTCTCAGCGTGGATCC
GAACGCGGCTTCAACAGATATCAAATACGCTGCATCTCCAAATGAGCACA
CCTTAAGAGGTGAATCGTATGATATTGTATGCGCCTCATATTCTCTCAAC
GAAATCGTTCGCCGTGCCATGGCTAATCCTCAAGACTCGAGCCATTCCAA
CGATCAAACTGAGGAAAGAGCGCCCGTACGCCGCGAAAACCGTGTGAAAG
TAGCAGAGAAGTTGCTTCGAAGGACAATAAAATCACTATGGGCACGTACG
AAGTTGGGCGGTCTGTTTCTTGTCATAGAGGACGGAACCGCAGCAGGGTT
CGAAACCGTCTCTTATGCTAGGGAAGTCATATTGACTTTGAATCCGAAAC
AAGAGGCTATTGAGAACGATAGTGAAACACTGTCAACGGGCGACGAAGCG
CAGCAAACTACAGGAAAGGTTATAGCCCCGTGTCTACATTCAAGAACTTG
TCCTCTGAAGGATTCCATAACTCGACATCGTGTATGTAGGTTTCAGCAAC
GTCTCAATCGACCCTTGTTCTCCCGCAATGCTGATCCACTACCCACTGGA
TATGAAGACGAATACTTTTCATTTATAGCCATTCAAAAGATACCCCAGAA
TTCTAACACTACGACAGAGGATGAGGCTGCAGGGTGGGGCAGATTGATAA
GAGCGCCACTTCTGAGAACAAAGCATATCGCTATCGATGTATGCACAAGT
GAAGGCAATTTAGAGAGACGAGTAGTGTCGAAGAAGAACGCACGACCAGG
GCAGTTTTCTCAGGCCCGGAGGTCTAAGTGGGGAGACATATGGCCTGAAG
AACCAAGCTCCAAATCGCAGACGCTGAACTTTTGA
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protein sequence of Ggra1515.t1

>Ggra1515.t1 ID=Ggra1515.t1|Name=Ggra1515.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MIARSVSSFSNLRLFCSPHRLLSSSVLHHTNDAEQNTSIPVPSEFASQSY
RRVPNSPTLPLEAVAVPKTVQAQVHSLIKEKKLSAKHIRKHVKALSLARA
PDFFRRRKSVAQKGQPHIQPPLKYTDAEAVSYTALRMPATLASNVYIMAE
IRRLMPHFAPASILDFGTGAGVSVMAATRSFPSAAHDDSTSSIRDACLID
QASPMLKVAGKLLSVDPNAASTDIKYAASPNEHTLRGESYDIVCASYSLN
EIVRRAMANPQDSSHSNDQTEERAPVRRENRVKVAEKLLRRTIKSLWART
KLGGLFLVIEDGTAAGFETVSYAREVILTLNPKQEAIENDSETLSTGDEA
QQTTGKVIAPCLHSRTCPLKDSITRHRVCRFQQRLNRPLFSRNADPLPTG
YEDEYFSFIAIQKIPQNSNTTTEDEAAGWGRLIRAPLLRTKHIAIDVCTS
EGNLERRVVSKKNARPGQFSQARRSKWGDIWPEEPSSKSQTLNF*
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mRNA from alignment at tig00000844_pilon:296152..297636+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1515.t1 ID=Ggra1515.t1|Name=Ggra1515.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000844_pilon:296152..297636+ (Gracilaria gracilis GNS1m male)
ATGATAGCACGTTCGGTATCCAGCTTTTCCAACTTGAGACTCTTCTGTTC
GCCTCACCGTCTGTTATCTTCGTCAGTACTGCACCACACCAATGACGCGG
AACAGAACACATCAATTCCAGTTCCGTCCGAGTTCGCCTCCCAATCGTAT
CGTCGGGTGCCCAACTCTCCTACCCTACCACTAGAAGCTGTGGCAGTCCC
TAAAACTGTACAAGCCCAAGTTCATTCTCTCATCAAAGAAAAAAAACTCT
CTGCCAAGCACATCAGGAAACATGTCAAAGCACTGTCGCTTGCGAGGGCT
CCGGACTTTTTTCGACGACGGAAATCAGTTGCGCAGAAAGGTCAGCCTCA
TATTCAACCTCCGTTGAAGTACACTGATGCTGAAGCAGTTTCCTATACTG
CTCTGAGAATGCCTGCTACACTTGCATCCAATGTTTACATCATGGCCGAG
ATACGTCGCTTGATGCCCCACTTTGCTCCCGCCAGTATTCTTGACTTTGG
CACTGGGGCTGGCGTCTCTGTGATGGCTGCAACCCGATCATTTCCTTCCG
CTGCACATGATGATTCCACTTCAAGTATTCGCGATGCCTGCTTAATAGAT
CAAGCATCACCAATGCTGAAGGTTGCAGGAAAGCTTCTCAGCGTGGATCC
GAACGCGGCTTCAACAGATATCAAATACGCTGCATCTCCAAATGAGCACA
CCTTAAGAGGTGAATCGTATGATATTGTATGCGCCTCATATTCTCTCAAC
GAAATCGTTCGCCGTGCCATGGCTAATCCTCAAGACTCGAGCCATTCCAA
CGATCAAACTGAGGAAAGAGCGCCCGTACGCCGCGAAAACCGTGTGAAAG
TAGCAGAGAAGTTGCTTCGAAGGACAATAAAATCACTATGGGCACGTACG
AAGTTGGGCGGTCTGTTTCTTGTCATAGAGGACGGAACCGCAGCAGGGTT
CGAAACCGTCTCTTATGCTAGGGAAGTCATATTGACTTTGAATCCGAAAC
AAGAGGCTATTGAGAACGATAGTGAAACACTGTCAACGGGCGACGAAGCG
CAGCAAACTACAGGAAAGGTTATAGCCCCGTGTCTACATTCAAGAACTTG
TCCTCTGAAGGATTCCATAACTCGACATCGTGTATGTAGGTTTCAGCAAC
GTCTCAATCGACCCTTGTTCTCCCGCAATGCTGATCCACTACCCACTGGA
TATGAAGACGAATACTTTTCATTTATAGCCATTCAAAAGATACCCCAGAA
TTCTAACACTACGACAGAGGATGAGGCTGCAGGGTGGGGCAGATTGATAA
GAGCGCCACTTCTGAGAACAAAGCATATCGCTATCGATGTATGCACAAGT
GAAGGCAATTTAGAGAGACGAGTAGTGTCGAAGAAGAACGCACGACCAGG
GCAGTTTTCTCAGGCCCGGAGGTCTAAGTGGGGAGACATATGGCCTGAAG
AACCAAGCTCCAAATCGCAGACGCTGAACTTTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:296152..297636+

>Ggra1515.t1 ID=Ggra1515.t1|Name=Ggra1515.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000844_pilon:296152..297636+ (Gracilaria gracilis GNS1m male)
ATGATAGCACGTTCGGTATCCAGCTTTTCCAACTTGAGACTCTTCTGTTC
GCCTCACCGTCTGTTATCTTCGTCAGTACTGCACCACACCAATGACGCGG
AACAGAACACATCAATTCCAGTTCCGTCCGAGTTCGCCTCCCAATCGTAT
CGTCGGGTGCCCAACTCTCCTACCCTACCACTAGAAGCTGTGGCAGTCCC
TAAAACTGTACAAGCCCAAGTTCATTCTCTCATCAAAGAAAAAAAACTCT
CTGCCAAGCACATCAGGAAACATGTCAAAGCACTGTCGCTTGCGAGGGCT
CCGGACTTTTTTCGACGACGGAAATCAGTTGCGCAGAAAGGTCAGCCTCA
TATTCAACCTCCGTTGAAGTACACTGATGCTGAAGCAGTTTCCTATACTG
CTCTGAGAATGCCTGCTACACTTGCATCCAATGTTTACATCATGGCCGAG
ATACGTCGCTTGATGCCCCACTTTGCTCCCGCCAGTATTCTTGACTTTGG
CACTGGGGCTGGCGTCTCTGTGATGGCTGCAACCCGATCATTTCCTTCCG
CTGCACATGATGATTCCACTTCAAGTATTCGCGATGCCTGCTTAATAGAT
CAAGCATCACCAATGCTGAAGGTTGCAGGAAAGCTTCTCAGCGTGGATCC
GAACGCGGCTTCAACAGATATCAAATACGCTGCATCTCCAAATGAGCACA
CCTTAAGAGGTGAATCGTATGATATTGTATGCGCCTCATATTCTCTCAAC
GAAATCGTTCGCCGTGCCATGGCTAATCCTCAAGACTCGAGCCATTCCAA
CGATCAAACTGAGGAAAGAGCGCCCGTACGCCGCGAAAACCGTGTGAAAG
TAGCAGAGAAGTTGCTTCGAAGGACAATAAAATCACTATGGGCACGTACG
AAGTTGGGCGGTCTGTTTCTTGTCATAGAGGACGGAACCGCAGCAGGGTT
CGAAACCGTCTCTTATGCTAGGGAAGTCATATTGACTTTGAATCCGAAAC
AAGAGGCTATTGAGAACGATAGTGAAACACTGTCAACGGGCGACGAAGCG
CAGCAAACTACAGGAAAGGTTATAGCCCCGTGTCTACATTCAAGAACTTG
TCCTCTGAAGGATTCCATAACTCGACATCGTGTATGTAGGTTTCAGCAAC
GTCTCAATCGACCCTTGTTCTCCCGCAATGCTGATCCACTACCCACTGGA
TATGAAGACGAATACTTTTCATTTATAGCCATTCAAAAGATACCCCAGAA
TTCTAACACTACGACAGAGGATGAGGCTGCAGGGTGGGGCAGATTGATAA
GAGCGCCACTTCTGAGAACAAAGCATATCGCTATCGATGTATGCACAAGT
GAAGGCAATTTAGAGAGACGAGTAGTGTCGAAGAAGAACGCACGACCAGG
GCAGTTTTCTCAGGCCCGGAGGTCTAAGTGGGGAGACATATGGCCTGAAG
AACCAAGCTCCAAATCGCAGACGCTGAACTTTTGA
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