Ggra1510.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1510.t1
Unique Name	Ggra1510.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	711

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:284895..287027 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	35128.Thaps3936
Max annot lvl	2836\|Bacillariophyta
Evalue	4.21e-99
EggNOG OGs	2CPQW@1\|root,2R2E8@2759\|Eukaryota,2XESG@2836\|Bacillariophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1510	Ggra1510	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 284895..287027 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1510.t1.start1	Ggra1510.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 284895..284897 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1510.t1.CDS1	Ggra1510.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 284895..287027 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1510.t1.exon1	Ggra1510.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 284895..287027 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1510.t1.stop1	Ggra1510.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 287025..287027 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1510.t1	Ggra1510.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 284895..287027 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:284895..287027+
coding sequence from alignment at tig00000844_pilon:284895..287027+

mRNA sequence

>Ggra1510.t1 ID=Ggra1510.t1|Name=Ggra1510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=711bp
MSSAEEGRLPSRAARPSPSRAIAIPTDDDDHFEIWAQSPGAESYVANSES
WRPMPPPMLASSLDTSTRFRPSLATRPDFYDRSPSVSTVGSRNSSSAQLP
QLPPLALEPSTVYGAAQTAAPAVKLPPTLLVSPPPPPPPPPPPPPSSRRA
HRGARRRHAAGRASSAGAFAPIKAKLVKMMVHIRQLEEAPRELWLIFAMK
FLSSYAYFSLSLVLTIFLTDEFGMSDTAAGWAYGAYGVMSTFFGLLCGWF
IDYLGVRASLLVGALIGSLSRFVMAVTLSRHTAVLMLYSFLPFAECLGIP
IMTIGIKRYTNAHNRTFAFSLFYSMMNVAALCAGPLVDVARSLFDSGVTI
NLHSWGQIKMSGLRLVILSSAVSTAMMVLVALVGIREVHVDESGTVQEFT
PNRESPLSQTREVLKDPAFWRLSLFTLLLIGVRLVFRHLDATMPKYLTRE
FGRDAPFGMIYAINPFLIIFLVPIVGLLTRRIESFPMIVFGSFIAAASPF
WVALRQSYFGVVMFMVTLSIGEAIYSPRVYEYTMEVSAHGSEGIYSSLSS
APLFSVKLVVGGMSGWLLSTFMPVGGPYHGTVIWTIIGVTSMTSPVLMCL
LREYISPSNEYESGREDENGVEREEVAVKGRDMQALPMVSAARPPSGRSA
AVTINRSFNGLDNEEDEEGLLLPSSYRGRSVGSFPASSPRSGRSSWAAGD
TPQANGELGT*

spliced messenger RNA

>Ggra1510.t1 ID=Ggra1510.t1|Name=Ggra1510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000844_pilon:284895..287027+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCGCCGAGGAAGGTCGTCTTCCCTCGCGCGCCGCGCGTCCGTC
GCCGTCGCGCGCCATAGCCATTCCCACCGACGACGACGACCACTTCGAAA
TCTGGGCGCAATCGCCGGGAGCCGAGTCATACGTCGCCAACAGCGAGTCA
TGGCGACCTATGCCGCCGCCCATGCTCGCGTCCTCCCTGGACACCAGTAC
ACGATTTCGACCCAGCTTGGCCACGCGCCCCGATTTCTACGACCGTAGCC
CGAGCGTTAGTACTGTCGGAAGTCGCAACAGTAGCTCCGCACAGCTGCCT
CAGCTGCCGCCGCTCGCGCTTGAGCCTTCTACCGTGTACGGCGCGGCGCA
AACGGCGGCGCCGGCTGTCAAGCTGCCGCCTACGCTGCTTGTTTcgccgc
cgccgccgccgccgccgccgccgccgccgccgccTTCGTCGCGACGTGCT
CACCGTGGCGCGCGGCGTCGGCATGCCGCTGGTCGTGCTTCTAGTGCGGG
TGCGTTTGCGCCCATCAAGGCCAAGTTGGTCAAGATGATGGTGCATATAC
GCCAATTAGAAGAGGCTCCGCGTGAGCTGTGGTTGATATTTGCTATGAAG
TTTCTGTCCAGTTATGCGTACTTCTCGCTGTCGTTGGTGCTGACCATCTT
CTTGACGGACGAGTTTGGCATGTCGGACACGGCTGCTGGCTGGGCGTACG
GCGCCTATGGCGTGATGAGCACGTTTTTCGGCTTGTTGTGTGGTTGGTTT
ATCGATTACTTGGGCGTGAGGGCGTCGCTTTTGGTCGGTGCTTTGATTGG
TTCTTTGTCGCGTTTCGTCATGGCCGTCACTTTGTCGCGACATACGGCCG
TGCTGATGTTGTACTCGTTCCTACCGTTTGCAGAGTGTCTGGGTATACCC
ATCATGACCATCGGTATAAAGCGGTACACCAACGCGCACAATCGCACGTT
TGCATTCTCGTTGTTCTACTCCATGATGAACGTGGCGGCGCTGTGCGCGG
GGCCGCTCGTGGACGTGGCGAGAAGTCTGTTTGACAGCGGCGTGACCATC
AACTTGCATTCGTGGGGGCAGATCAAGATGTCCGGCTTGCGGTTGGTGAT
TCTCAGCAGCGCTGTCTCCACCGCCATGATGGTGCTGGTGGCTCTGGTAG
GCATCCGAGAAGTGCACGTGGACGAAAGTGGAACGGTTCAAGAGTTCACG
CCGAACCGAGAAAGCCCGCTGTCGCAAACCAGGGAAGTGTTGAAAGACCC
CGCGTTCTGGCGACTAAGTCTGTTCACGCTGCTGTTGATCGGGGTGCGGC
TGGTATTCCGTCACCTGGACGCAACGATGCCCAAGTACTTGACTAGGGAG
TTTGGACGCGATGCGCCGTTCGGTATGATATACGCGATTAACCCGTTTCT
GATCATCTTCCTGGTACCGATAGTGGGGCTTCTCACGCGGCGAATTGAGT
CGTTTCCAATGATTGTTTTCGGGAGCTTCATCGCGGCCGCAAGCCCGTTC
TGGGTCGCGTTGAGACAGAGCTACTTTGGGGTGGTGATGTTCATGGTGAC
GTTAAGTATTGGCGAAGCGATTTACTCGCCGCGCGTGTACGAGTATACGA
TGGAGGTGAGCGCACACGGCTCCGAGGGCATTTATTCGAGCCTGTCGTCG
GCGCCGCTGTTCTCGGTGAAGTTGGTGGTGGGCGGGATGTCCGGTTGGTT
GCTGAGCACGTTCATGCCGGTCGGAGGCCCGTATCACGGCACGGTGATCT
GGACGATCATCGGGGTGACCAGCATGACGTCACCAGTGTTGATGTGTCTG
CTGCGCGAGTATATCTCGCCGTCGAACGAGTATGAAAGCGGGAGAGAGGA
TGAGAATGGGGTGGAACGAGAGGAGGTGGCAGTGAAGGGAAGGGACATGC
AAGCGTTGCCGATGGTGTCGGCGGCTCGACCGCCGTCGGGTCGGTCGGCG
GCCGTGACGATCAATAGGAGCTTTAATGGGTTGGACAACGAGGAGGACGA
GGAGGGGTTGTTGCTGCCGTCGTCGTACAGGGGACGGTCGGTGGGGTCGT
TTCCGGCGTCGAGCCCGCGGTCGGGCAGATCAAGTTGGGCGGCGGGTGAC
ACGCCACAGGCGAATGGCGAGCTGGGCACATGA

protein sequence of Ggra1510.t1

>Ggra1510.t1 ID=Ggra1510.t1|Name=Ggra1510.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=711bp
MSSAEEGRLPSRAARPSPSRAIAIPTDDDDHFEIWAQSPGAESYVANSES
WRPMPPPMLASSLDTSTRFRPSLATRPDFYDRSPSVSTVGSRNSSSAQLP
QLPPLALEPSTVYGAAQTAAPAVKLPPTLLVSPPPPPPPPPPPPPSSRRA
HRGARRRHAAGRASSAGAFAPIKAKLVKMMVHIRQLEEAPRELWLIFAMK
FLSSYAYFSLSLVLTIFLTDEFGMSDTAAGWAYGAYGVMSTFFGLLCGWF
IDYLGVRASLLVGALIGSLSRFVMAVTLSRHTAVLMLYSFLPFAECLGIP
IMTIGIKRYTNAHNRTFAFSLFYSMMNVAALCAGPLVDVARSLFDSGVTI
NLHSWGQIKMSGLRLVILSSAVSTAMMVLVALVGIREVHVDESGTVQEFT
PNRESPLSQTREVLKDPAFWRLSLFTLLLIGVRLVFRHLDATMPKYLTRE
FGRDAPFGMIYAINPFLIIFLVPIVGLLTRRIESFPMIVFGSFIAAASPF
WVALRQSYFGVVMFMVTLSIGEAIYSPRVYEYTMEVSAHGSEGIYSSLSS
APLFSVKLVVGGMSGWLLSTFMPVGGPYHGTVIWTIIGVTSMTSPVLMCL
LREYISPSNEYESGREDENGVEREEVAVKGRDMQALPMVSAARPPSGRSA
AVTINRSFNGLDNEEDEEGLLLPSSYRGRSVGSFPASSPRSGRSSWAAGD
TPQANGELGT*

mRNA from alignment at tig00000844_pilon:284895..287027+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1510.t1 ID=Ggra1510.t1|Name=Ggra1510.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2133bp|location=Sequence derived from alignment at tig00000844_pilon:284895..287027+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCGCCGAGGAAGGTCGTCTTCCCTCGCGCGCCGCGCGTCCGTC
GCCGTCGCGCGCCATAGCCATTCCCACCGACGACGACGACCACTTCGAAA
TCTGGGCGCAATCGCCGGGAGCCGAGTCATACGTCGCCAACAGCGAGTCA
TGGCGACCTATGCCGCCGCCCATGCTCGCGTCCTCCCTGGACACCAGTAC
ACGATTTCGACCCAGCTTGGCCACGCGCCCCGATTTCTACGACCGTAGCC
CGAGCGTTAGTACTGTCGGAAGTCGCAACAGTAGCTCCGCACAGCTGCCT
CAGCTGCCGCCGCTCGCGCTTGAGCCTTCTACCGTGTACGGCGCGGCGCA
AACGGCGGCGCCGGCTGTCAAGCTGCCGCCTACGCTGCTTGTTTcgccgc
cgccgccgccgccgccgccgccgccgccgccgccTTCGTCGCGACGTGCT
CACCGTGGCGCGCGGCGTCGGCATGCCGCTGGTCGTGCTTCTAGTGCGGG
TGCGTTTGCGCCCATCAAGGCCAAGTTGGTCAAGATGATGGTGCATATAC
GCCAATTAGAAGAGGCTCCGCGTGAGCTGTGGTTGATATTTGCTATGAAG
TTTCTGTCCAGTTATGCGTACTTCTCGCTGTCGTTGGTGCTGACCATCTT
CTTGACGGACGAGTTTGGCATGTCGGACACGGCTGCTGGCTGGGCGTACG
GCGCCTATGGCGTGATGAGCACGTTTTTCGGCTTGTTGTGTGGTTGGTTT
ATCGATTACTTGGGCGTGAGGGCGTCGCTTTTGGTCGGTGCTTTGATTGG
TTCTTTGTCGCGTTTCGTCATGGCCGTCACTTTGTCGCGACATACGGCCG
TGCTGATGTTGTACTCGTTCCTACCGTTTGCAGAGTGTCTGGGTATACCC
ATCATGACCATCGGTATAAAGCGGTACACCAACGCGCACAATCGCACGTT
TGCATTCTCGTTGTTCTACTCCATGATGAACGTGGCGGCGCTGTGCGCGG
GGCCGCTCGTGGACGTGGCGAGAAGTCTGTTTGACAGCGGCGTGACCATC
AACTTGCATTCGTGGGGGCAGATCAAGATGTCCGGCTTGCGGTTGGTGAT
TCTCAGCAGCGCTGTCTCCACCGCCATGATGGTGCTGGTGGCTCTGGTAG
GCATCCGAGAAGTGCACGTGGACGAAAGTGGAACGGTTCAAGAGTTCACG
CCGAACCGAGAAAGCCCGCTGTCGCAAACCAGGGAAGTGTTGAAAGACCC
CGCGTTCTGGCGACTAAGTCTGTTCACGCTGCTGTTGATCGGGGTGCGGC
TGGTATTCCGTCACCTGGACGCAACGATGCCCAAGTACTTGACTAGGGAG
TTTGGACGCGATGCGCCGTTCGGTATGATATACGCGATTAACCCGTTTCT
GATCATCTTCCTGGTACCGATAGTGGGGCTTCTCACGCGGCGAATTGAGT
CGTTTCCAATGATTGTTTTCGGGAGCTTCATCGCGGCCGCAAGCCCGTTC
TGGGTCGCGTTGAGACAGAGCTACTTTGGGGTGGTGATGTTCATGGTGAC
GTTAAGTATTGGCGAAGCGATTTACTCGCCGCGCGTGTACGAGTATACGA
TGGAGGTGAGCGCACACGGCTCCGAGGGCATTTATTCGAGCCTGTCGTCG
GCGCCGCTGTTCTCGGTGAAGTTGGTGGTGGGCGGGATGTCCGGTTGGTT
GCTGAGCACGTTCATGCCGGTCGGAGGCCCGTATCACGGCACGGTGATCT
GGACGATCATCGGGGTGACCAGCATGACGTCACCAGTGTTGATGTGTCTG
CTGCGCGAGTATATCTCGCCGTCGAACGAGTATGAAAGCGGGAGAGAGGA
TGAGAATGGGGTGGAACGAGAGGAGGTGGCAGTGAAGGGAAGGGACATGC
AAGCGTTGCCGATGGTGTCGGCGGCTCGACCGCCGTCGGGTCGGTCGGCG
GCCGTGACGATCAATAGGAGCTTTAATGGGTTGGACAACGAGGAGGACGA
GGAGGGGTTGTTGCTGCCGTCGTCGTACAGGGGACGGTCGGTGGGGTCGT
TTCCGGCGTCGAGCCCGCGGTCGGGCAGATCAAGTTGGGCGGCGGGTGAC
ACGCCACAGGCGAATGGCGAGCTGGGCACATGA

Coding sequence (CDS) from alignment at tig00000844_pilon:284895..287027+

>Ggra1510.t1 ID=Ggra1510.t1|Name=Ggra1510.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2133bp|location=Sequence derived from alignment at tig00000844_pilon:284895..287027+ (Gracilaria gracilis GNS1m male)
ATGTCTTCCGCCGAGGAAGGTCGTCTTCCCTCGCGCGCCGCGCGTCCGTC
GCCGTCGCGCGCCATAGCCATTCCCACCGACGACGACGACCACTTCGAAA
TCTGGGCGCAATCGCCGGGAGCCGAGTCATACGTCGCCAACAGCGAGTCA
TGGCGACCTATGCCGCCGCCCATGCTCGCGTCCTCCCTGGACACCAGTAC
ACGATTTCGACCCAGCTTGGCCACGCGCCCCGATTTCTACGACCGTAGCC
CGAGCGTTAGTACTGTCGGAAGTCGCAACAGTAGCTCCGCACAGCTGCCT
CAGCTGCCGCCGCTCGCGCTTGAGCCTTCTACCGTGTACGGCGCGGCGCA
AACGGCGGCGCCGGCTGTCAAGCTGCCGCCTACGCTGCTTGTTTcgccgc
cgccgccgccgccgccgccgccgccgccgccgccTTCGTCGCGACGTGCT
CACCGTGGCGCGCGGCGTCGGCATGCCGCTGGTCGTGCTTCTAGTGCGGG
TGCGTTTGCGCCCATCAAGGCCAAGTTGGTCAAGATGATGGTGCATATAC
GCCAATTAGAAGAGGCTCCGCGTGAGCTGTGGTTGATATTTGCTATGAAG
TTTCTGTCCAGTTATGCGTACTTCTCGCTGTCGTTGGTGCTGACCATCTT
CTTGACGGACGAGTTTGGCATGTCGGACACGGCTGCTGGCTGGGCGTACG
GCGCCTATGGCGTGATGAGCACGTTTTTCGGCTTGTTGTGTGGTTGGTTT
ATCGATTACTTGGGCGTGAGGGCGTCGCTTTTGGTCGGTGCTTTGATTGG
TTCTTTGTCGCGTTTCGTCATGGCCGTCACTTTGTCGCGACATACGGCCG
TGCTGATGTTGTACTCGTTCCTACCGTTTGCAGAGTGTCTGGGTATACCC
ATCATGACCATCGGTATAAAGCGGTACACCAACGCGCACAATCGCACGTT
TGCATTCTCGTTGTTCTACTCCATGATGAACGTGGCGGCGCTGTGCGCGG
GGCCGCTCGTGGACGTGGCGAGAAGTCTGTTTGACAGCGGCGTGACCATC
AACTTGCATTCGTGGGGGCAGATCAAGATGTCCGGCTTGCGGTTGGTGAT
TCTCAGCAGCGCTGTCTCCACCGCCATGATGGTGCTGGTGGCTCTGGTAG
GCATCCGAGAAGTGCACGTGGACGAAAGTGGAACGGTTCAAGAGTTCACG
CCGAACCGAGAAAGCCCGCTGTCGCAAACCAGGGAAGTGTTGAAAGACCC
CGCGTTCTGGCGACTAAGTCTGTTCACGCTGCTGTTGATCGGGGTGCGGC
TGGTATTCCGTCACCTGGACGCAACGATGCCCAAGTACTTGACTAGGGAG
TTTGGACGCGATGCGCCGTTCGGTATGATATACGCGATTAACCCGTTTCT
GATCATCTTCCTGGTACCGATAGTGGGGCTTCTCACGCGGCGAATTGAGT
CGTTTCCAATGATTGTTTTCGGGAGCTTCATCGCGGCCGCAAGCCCGTTC
TGGGTCGCGTTGAGACAGAGCTACTTTGGGGTGGTGATGTTCATGGTGAC
GTTAAGTATTGGCGAAGCGATTTACTCGCCGCGCGTGTACGAGTATACGA
TGGAGGTGAGCGCACACGGCTCCGAGGGCATTTATTCGAGCCTGTCGTCG
GCGCCGCTGTTCTCGGTGAAGTTGGTGGTGGGCGGGATGTCCGGTTGGTT
GCTGAGCACGTTCATGCCGGTCGGAGGCCCGTATCACGGCACGGTGATCT
GGACGATCATCGGGGTGACCAGCATGACGTCACCAGTGTTGATGTGTCTG
CTGCGCGAGTATATCTCGCCGTCGAACGAGTATGAAAGCGGGAGAGAGGA
TGAGAATGGGGTGGAACGAGAGGAGGTGGCAGTGAAGGGAAGGGACATGC
AAGCGTTGCCGATGGTGTCGGCGGCTCGACCGCCGTCGGGTCGGTCGGCG
GCCGTGACGATCAATAGGAGCTTTAATGGGTTGGACAACGAGGAGGACGA
GGAGGGGTTGTTGCTGCCGTCGTCGTACAGGGGACGGTCGGTGGGGTCGT
TTCCGGCGTCGAGCCCGCGGTCGGGCAGATCAAGTTGGGCGGCGGGTGAC
ACGCCACAGGCGAATGGCGAGCTGGGCACATGA