Ggra1506.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1506.t1
Unique NameGgra1506.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:277002..277757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMT118CT
Preferred nameC12orf65
PFAMsRF-1
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00033,RC00060,RC00181,RC00496
KEGG koko:K03462,ko:K11428
KEGG ReactionR01271,R03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko00760,ko01100,ko04621,map00310,map00760,map01100,map04621
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003676,GO:0003723,GO:0003747,GO:0003824,GO:0004045,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0015934,GO:0016020,GO:0016043,GO:0016150,GO:0016787,GO:0016788,GO:0019222,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031323,GO:0031326,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032268,GO:0032543,GO:0032984,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0052689,GO:0060255,GO:0065007,GO:0070013,GO:0070126,GO:0071704,GO:0071840,GO:0072344,GO:0080090,GO:0097159,GO:0098798,GO:0140053,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904,GO:2000112
Evalue1.21e-28
EggNOG OGsCOG0216@1|root,KOG2726@2759|Eukaryota
EC2.1.1.43,2.4.2.12
Descriptiontranslation release factor activity
COG categoryJ
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1506Ggra1506Gracilaria gracilis GNS1m malegenetig00000844_pilon 277002..277757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1Ggra1506.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 277002..277757 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1.start1Ggra1506.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 277002..277004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1.CDS1Ggra1506.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 277002..277418 +
Ggra1506.t1.CDS2Ggra1506.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 277518..277757 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1.exon1Ggra1506.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 277002..277418 +
Ggra1506.t1.exon2Ggra1506.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 277518..277757 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1.intron1Ggra1506.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 277419..277517 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1506.t1.stop1Ggra1506.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 277755..277757 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1506.t1 ID=Ggra1506.t1|Name=Ggra1506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=219bp
MARRAVAQLANLAFSSPLSCRLVPLPHHNNAVSRARANGHLIVSGLPYRR
ACLSSRRTAVNCALTSPTLSDVPNDVHRPFSSESQSVQPVVGGDKLSEVQ
TKSIKGYELPPIREEDLVEDFVRGSGAGGQKVNKTSNCVVLKHTPSGIVV
KCQQTRSRDQNRKLAREILQRRLDEQLQGEESLAAKELHLARARKAKRRR
KAIKKHFKSRRDRSLLDF*
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spliced messenger RNA

>Ggra1506.t1 ID=Ggra1506.t1|Name=Ggra1506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00000844_pilon:277002..277757+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACGAAGGGCCGTTGCGCAACTAGCGAATTTGGCTTTCTCTTCGCC
GCTGTCTTGCCGCCTTGTCCCCCTCCCGCATCACAACAACGCAGTGTCAC
GAGCACGAGCAAATGGTCATTTAATCGTTTCGGGCTTGCCGTACAGACGG
GCCTGTCTGTCCTCGAGACGAACAGCTGTGAATTGCGCTCTCACGTCTCC
GACACTTTCTGACGTGCCGAACGACGTACATAGACCCTTCAGCAGTGAAT
CGCAAAGCGTACAACCAGTTGTTGGTGGTGATAAGCTTTCAGAAGTTCAA
ACTAAGTCCATTAAGGGTTACGAGCTACCTCCGATTAGAGAAGAGGACTT
AGTTGAAGATTTTGTCAGAGGCTCAGGTGCCGGGGGTCAGAAAGTAAACA
AAACGTCGAACTGCGTGGTACTGAAACATACACCGTCTGGTATCGTGGTC
AAATGCCAACAAACAAGGAGCAGAGACCAAAATCGAAAGCTCGCGAGGGA
AATTTTGCAGCGAAGGCTTGATGAACAACTACAAGGAGAAGAGTCCTTGG
CGGCAAAGGAATTGCATCTTGCCCGCGCAAGGAAGGCGAAACGGCGAAGG
AAGGCTATCAAGAAGCACTTCAAATCACGGAGGGATAGAAGTCTCTTAGA
TTTCTGA
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protein sequence of Ggra1506.t1

>Ggra1506.t1 ID=Ggra1506.t1|Name=Ggra1506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=219bp
MARRAVAQLANLAFSSPLSCRLVPLPHHNNAVSRARANGHLIVSGLPYRR
ACLSSRRTAVNCALTSPTLSDVPNDVHRPFSSESQSVQPVVGGDKLSEVQ
TKSIKGYELPPIREEDLVEDFVRGSGAGGQKVNKTSNCVVLKHTPSGIVV
KCQQTRSRDQNRKLAREILQRRLDEQLQGEESLAAKELHLARARKAKRRR
KAIKKHFKSRRDRSLLDF*
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mRNA from alignment at tig00000844_pilon:277002..277757+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1506.t1 ID=Ggra1506.t1|Name=Ggra1506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000844_pilon:277002..277757+ (Gracilaria gracilis GNS1m male)
ATGGCACGAAGGGCCGTTGCGCAACTAGCGAATTTGGCTTTCTCTTCGCC
GCTGTCTTGCCGCCTTGTCCCCCTCCCGCATCACAACAACGCAGTGTCAC
GAGCACGAGCAAATGGTCATTTAATCGTTTCGGGCTTGCCGTACAGACGG
GCCTGTCTGTCCTCGAGACGAACAGCTGTGAATTGCGCTCTCACGTCTCC
GACACTTTCTGACGTGCCGAACGACGTACATAGACCCTTCAGCAGTGAAT
CGCAAAGCGTACAACCAGTTGTTGGTGGTGATAAGCTTTCAGAAGTTCAA
ACTAAGTCCATTAAGGGTTACGAGCTACCTCCGATTAGAGAAGAGGACTT
AGTTGAAGATTTTGTCAGAGGCTCAGGTGCCGGGGGTCAGAAAGTAAACA
AAACGTCGAACTGCGTGGTACGTACATTTCCATTGAACATATCTTAGCTT
TCACTCCGCCGAATTGAGGGCATGAACTAACAGCTGTTTCCTACTCGCGG
GTGTGGATTGAATCAGGTACTGAAACATACACCGTCTGGTATCGTGGTCA
AATGCCAACAAACAAGGAGCAGAGACCAAAATCGAAAGCTCGCGAGGGAA
ATTTTGCAGCGAAGGCTTGATGAACAACTACAAGGAGAAGAGTCCTTGGC
GGCAAAGGAATTGCATCTTGCCCGCGCAAGGAAGGCGAAACGGCGAAGGA
AGGCTATCAAGAAGCACTTCAAATCACGGAGGGATAGAAGTCTCTTAGAT
TTCTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:277002..277757+

>Ggra1506.t1 ID=Ggra1506.t1|Name=Ggra1506.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00000844_pilon:277002..277757+ (Gracilaria gracilis GNS1m male)
ATGGCACGAAGGGCCGTTGCGCAACTAGCGAATTTGGCTTTCTCTTCGCC
GCTGTCTTGCCGCCTTGTCCCCCTCCCGCATCACAACAACGCAGTGTCAC
GAGCACGAGCAAATGGTCATTTAATCGTTTCGGGCTTGCCGTACAGACGG
GCCTGTCTGTCCTCGAGACGAACAGCTGTGAATTGCGCTCTCACGTCTCC
GACACTTTCTGACGTGCCGAACGACGTACATAGACCCTTCAGCAGTGAAT
CGCAAAGCGTACAACCAGTTGTTGGTGGTGATAAGCTTTCAGAAGTTCAA
ACTAAGTCCATTAAGGGTTACGAGCTACCTCCGATTAGAGAAGAGGACTT
AGTTGAAGATTTTGTCAGAGGCTCAGGTGCCGGGGGTCAGAAAGTAAACA
AAACGTCGAACTGCGTGGTACTGAAACATACACCGTCTGGTATCGTGGTC
AAATGCCAACAAACAAGGAGCAGAGACCAAAATCGAAAGCTCGCGAGGGA
AATTTTGCAGCGAAGGCTTGATGAACAACTACAAGGAGAAGAGTCCTTGG
CGGCAAAGGAATTGCATCTTGCCCGCGCAAGGAAGGCGAAACGGCGAAGG
AAGGCTATCAAGAAGCACTTCAAATCACGGAGGGATAGAAGTCTCTTAGA
TTTCTGA
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