Ggra1498.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1498.t1
Unique Name	Ggra1498.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	662

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000844_pilon	contig	tig00000844_pilon:250304..252289 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707759.1
PFAMs	Orn_Arg_deC_N
Max annot lvl	2759\|Eukaryota
Evalue	1.36e-104
EggNOG OGs	2CXM8@1\|root,2RYCV@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1498	Ggra1498	Gracilaria gracilis GNS1m male	gene	tig00000844_pilon 250304..252289 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1498.t1.stop1	Ggra1498.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000844_pilon 250304..250306 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1498.t1.CDS1	Ggra1498.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000844_pilon 250304..252289 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1498.t1.exon1	Ggra1498.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000844_pilon 250304..252289 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1498.t1.start1	Ggra1498.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000844_pilon 252287..252289 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1498.t1	Ggra1498.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000844_pilon 250304..252289 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000844_pilon:250304..252289-
coding sequence from alignment at tig00000844_pilon:250304..252289-

mRNA sequence

>Ggra1498.t1 ID=Ggra1498.t1|Name=Ggra1498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=662bp
MTFEAGSAILSVNAVTARLIDRGRHFHLVHSEGEQPLGGPSTAAMNGTPL
ITRQPQPYVDFVNPSNPPQQSDAVAFVLRPPTVPKEDCGPLNEAVHMEWL
KGRGAAWISGSPQLQYSKENGSFHIRVLDLGSPTSDPSATIVTESGLAAA
LDTLEDAALDECVSRHLTEGGDDRLHLSSAGVNKYYCPPRPLPNDVVIRG
SCTCSSPTPDGFEAARRQLRSLWSGRVSFSQSMDNIRRRLSKVLKISVPH
QVILHPSGSDAELIPLVIAIERAKELACSKVVNIVAAAGEVGSGSAPAAA
GRHFSAFTPCGNPVSNGDLLEGFPDTTVIEELKPRCSEGKYAENYDEIVN
NIIKKHESFGDRPFFVVHAVDGSKTGLRLPSLDLLSMLKTTLGERLHIVM
DACQMRSEPKEIDWFLRRDASILVTSSKFYSAPGFCGAVVVSSNCANTLK
HNTAPIGLRDYLTQYEVPPCITGLHDILLRYPKNVGLLLRWECGMTEMEM
FEAMGMSVKFAMRKWVFAVRKLICDRRPALDLIDIECVENDRDETRCGGV
NSVVSIKLLAKDGCSYLDVGTLRRLHRYLTIDASSLLPAVASETERKVAA
LRCMVGQPVKLGSYGVLRLAVGAPMARDLAQGGQMEKTLKDDEKILEKMI
VLGKYCDEMRG*

spliced messenger RNA

>Ggra1498.t1 ID=Ggra1498.t1|Name=Ggra1498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000844_pilon:250304..252289- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTCGAAGCTGGTTCTGCTATACTAAGTGTCAATGCAGTCACGGC
GCGTCTCATAGACCGCGGTAGACACTTTCACTTGGTTCACTCGGAGGGCG
AGCAGCCCCTTGGTGGACCCTCGACCGCCGCAATGAACGGGACGCCACTC
ATCACTCGCCAGCCCCAGCCGTACGTCGACTTTGTCAACCCGTCAAACCC
GCCACAACAGAGCGATGCCGTTGCATTTGTTCTCCGCCCGCCTACAGTAC
CGAAAGAGGACTGTGGCCCGTTAAATGAGGCCGTTCATATGGAATGGTTG
AAAGGGCGTGGGGCAGCTTGGATATCGGGCTCCCCCCAACTGCAATACTC
AAAAGAGAACGGCTCGTTTCACATTCGTGTGCTGGACCTCGGTTCTCCAA
CTTCCGACCCATCTGCCACGATTGTGACTGAATCTGGTCTTGCTGCCGCA
CTTGACACCCTGGAGGACGCTGCATTGGACGAGTGCGTATCTCGCCACCT
CACCGAGGGTGGTGACGATCGCCTCCATCTCTCTTCCGCTGGTGTCAACA
AATACTACTGTCCGCCGCGGCCGCTACCCAACGATGTAGTAATTCGCGGA
AGTTGTACTTGTTCCTCTCCTACACCTGATGGCTTTGAAGCTGCACGCCG
TCAATTGCGAAGCTTATGGAGTGGACGAGTGTCTTTCTCGCAGAGCATGG
ATAATATTCGCCGACGATTATCCAAAGTGCTAAAAATATCGGTACCCCAT
CAGGTCATACTTCACCCATCTGGATCTGACGCTGAGCTGATTCCCCTCGT
CATTGCAATTGAGCGTGCCAAAGAGCTTGCATGCTCCAAGGTGGTGAACA
TCGTAGCTGCAGCGGGCGAAGTTGGATCTGGCTCTGCACCGGCTGCAGCA
GGGCGTCATTTTAGCGCGTTTACTCCCTGCGGCAATCCTGTCTCGAACGG
TGATCTTCTGGAGGGCTTCCCGGATACTACAGTTATCGAGGAATTGAAAC
CGCGCTGTTCCGAAGGGAAATACGCAGAGAACTACGATGAGATCGTAAAC
AATATTATTAAGAAGCATGAAAGCTTTGGCGATCGTCCGTTCTTCGTCGT
CCACGCTGTGGATGGCTCTAAGACGGGACTTCGATTACCGAGTTTGGACT
TGTTGTCTATGCTGAAAACAACTTTGGGAGAAAGGTTGCATATTGTGATG
GATGCATGTCAGATGCGTTCGGAGCCCAAAGAAATTGATTGGTTCCTCAG
ACGTGATGCGTCGATATTGGTAACGTCGAGCAAGTTCTACTCCGCACCTG
GGTTCTGCGGTGCGGTTGTTGTGTCTTCCAACTGTGCCAATACTCTGAAA
CACAATACGGCGCCTATTGGGCTACGCGACTATCTTACTCAGTACGAGGT
TCCACCGTGCATCACAGGCTTGCATGATATTCTGCTTCGATACCCGAAAA
ACGTCGGGCTGCTGCTTCGCTGGGAATGCGGTATGACCGAAATGGAGATG
TTTGAAGCGATGGGTATGAGCGTGAAGTTCGCAATGCGGAAGTGGGTGTT
CGCAGTGAGGAAATTGATCTGCGATCGTCGACCTGCACTTGATTTGATTG
ACATTGAATGCGTTGAGAACGATAGAGATGAAACGCGATGTGGCGGGGTG
AACTCAGTGGTGAGCATCAAGTTGCTGGCGAAGGATGGGTGCTCCTATTT
GGATGTGGGTACACTGCGTCGACTCCATCGATACCTGACGATTGACGCGT
CTTCATTGTTACCTGCTGTTGCGAGTGAGACGGAGCGTAAGGTGGCGGCG
CTGCGATGTATGGTGGGTCAGCCGGTCAAATTGGGGAGCTATGGGGTGCT
GAGACTTGCGGTGGGGGCTCCCATGGCTCGTGACCTCGCGCAAGGCGGAC
AAATGGAGAAAACTCTCAAGGATGATGAGAAAATCCTCGAGAAGATGATA
GTGCTGGGAAAGTATTGCGATGAAATGCGTGGTTAG

protein sequence of Ggra1498.t1

>Ggra1498.t1 ID=Ggra1498.t1|Name=Ggra1498.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=662bp
MTFEAGSAILSVNAVTARLIDRGRHFHLVHSEGEQPLGGPSTAAMNGTPL
ITRQPQPYVDFVNPSNPPQQSDAVAFVLRPPTVPKEDCGPLNEAVHMEWL
KGRGAAWISGSPQLQYSKENGSFHIRVLDLGSPTSDPSATIVTESGLAAA
LDTLEDAALDECVSRHLTEGGDDRLHLSSAGVNKYYCPPRPLPNDVVIRG
SCTCSSPTPDGFEAARRQLRSLWSGRVSFSQSMDNIRRRLSKVLKISVPH
QVILHPSGSDAELIPLVIAIERAKELACSKVVNIVAAAGEVGSGSAPAAA
GRHFSAFTPCGNPVSNGDLLEGFPDTTVIEELKPRCSEGKYAENYDEIVN
NIIKKHESFGDRPFFVVHAVDGSKTGLRLPSLDLLSMLKTTLGERLHIVM
DACQMRSEPKEIDWFLRRDASILVTSSKFYSAPGFCGAVVVSSNCANTLK
HNTAPIGLRDYLTQYEVPPCITGLHDILLRYPKNVGLLLRWECGMTEMEM
FEAMGMSVKFAMRKWVFAVRKLICDRRPALDLIDIECVENDRDETRCGGV
NSVVSIKLLAKDGCSYLDVGTLRRLHRYLTIDASSLLPAVASETERKVAA
LRCMVGQPVKLGSYGVLRLAVGAPMARDLAQGGQMEKTLKDDEKILEKMI
VLGKYCDEMRG*

mRNA from alignment at tig00000844_pilon:250304..252289-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1498.t1 ID=Ggra1498.t1|Name=Ggra1498.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1986bp|location=Sequence derived from alignment at tig00000844_pilon:250304..252289- (Gracilaria gracilis GNS1m male)
ATGACTTTCGAAGCTGGTTCTGCTATACTAAGTGTCAATGCAGTCACGGC
GCGTCTCATAGACCGCGGTAGACACTTTCACTTGGTTCACTCGGAGGGCG
AGCAGCCCCTTGGTGGACCCTCGACCGCCGCAATGAACGGGACGCCACTC
ATCACTCGCCAGCCCCAGCCGTACGTCGACTTTGTCAACCCGTCAAACCC
GCCACAACAGAGCGATGCCGTTGCATTTGTTCTCCGCCCGCCTACAGTAC
CGAAAGAGGACTGTGGCCCGTTAAATGAGGCCGTTCATATGGAATGGTTG
AAAGGGCGTGGGGCAGCTTGGATATCGGGCTCCCCCCAACTGCAATACTC
AAAAGAGAACGGCTCGTTTCACATTCGTGTGCTGGACCTCGGTTCTCCAA
CTTCCGACCCATCTGCCACGATTGTGACTGAATCTGGTCTTGCTGCCGCA
CTTGACACCCTGGAGGACGCTGCATTGGACGAGTGCGTATCTCGCCACCT
CACCGAGGGTGGTGACGATCGCCTCCATCTCTCTTCCGCTGGTGTCAACA
AATACTACTGTCCGCCGCGGCCGCTACCCAACGATGTAGTAATTCGCGGA
AGTTGTACTTGTTCCTCTCCTACACCTGATGGCTTTGAAGCTGCACGCCG
TCAATTGCGAAGCTTATGGAGTGGACGAGTGTCTTTCTCGCAGAGCATGG
ATAATATTCGCCGACGATTATCCAAAGTGCTAAAAATATCGGTACCCCAT
CAGGTCATACTTCACCCATCTGGATCTGACGCTGAGCTGATTCCCCTCGT
CATTGCAATTGAGCGTGCCAAAGAGCTTGCATGCTCCAAGGTGGTGAACA
TCGTAGCTGCAGCGGGCGAAGTTGGATCTGGCTCTGCACCGGCTGCAGCA
GGGCGTCATTTTAGCGCGTTTACTCCCTGCGGCAATCCTGTCTCGAACGG
TGATCTTCTGGAGGGCTTCCCGGATACTACAGTTATCGAGGAATTGAAAC
CGCGCTGTTCCGAAGGGAAATACGCAGAGAACTACGATGAGATCGTAAAC
AATATTATTAAGAAGCATGAAAGCTTTGGCGATCGTCCGTTCTTCGTCGT
CCACGCTGTGGATGGCTCTAAGACGGGACTTCGATTACCGAGTTTGGACT
TGTTGTCTATGCTGAAAACAACTTTGGGAGAAAGGTTGCATATTGTGATG
GATGCATGTCAGATGCGTTCGGAGCCCAAAGAAATTGATTGGTTCCTCAG
ACGTGATGCGTCGATATTGGTAACGTCGAGCAAGTTCTACTCCGCACCTG
GGTTCTGCGGTGCGGTTGTTGTGTCTTCCAACTGTGCCAATACTCTGAAA
CACAATACGGCGCCTATTGGGCTACGCGACTATCTTACTCAGTACGAGGT
TCCACCGTGCATCACAGGCTTGCATGATATTCTGCTTCGATACCCGAAAA
ACGTCGGGCTGCTGCTTCGCTGGGAATGCGGTATGACCGAAATGGAGATG
TTTGAAGCGATGGGTATGAGCGTGAAGTTCGCAATGCGGAAGTGGGTGTT
CGCAGTGAGGAAATTGATCTGCGATCGTCGACCTGCACTTGATTTGATTG
ACATTGAATGCGTTGAGAACGATAGAGATGAAACGCGATGTGGCGGGGTG
AACTCAGTGGTGAGCATCAAGTTGCTGGCGAAGGATGGGTGCTCCTATTT
GGATGTGGGTACACTGCGTCGACTCCATCGATACCTGACGATTGACGCGT
CTTCATTGTTACCTGCTGTTGCGAGTGAGACGGAGCGTAAGGTGGCGGCG
CTGCGATGTATGGTGGGTCAGCCGGTCAAATTGGGGAGCTATGGGGTGCT
GAGACTTGCGGTGGGGGCTCCCATGGCTCGTGACCTCGCGCAAGGCGGAC
AAATGGAGAAAACTCTCAAGGATGATGAGAAAATCCTCGAGAAGATGATA
GTGCTGGGAAAGTATTGCGATGAAATGCGTGGTTAG

Coding sequence (CDS) from alignment at tig00000844_pilon:250304..252289-

>Ggra1498.t1 ID=Ggra1498.t1|Name=Ggra1498.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1986bp|location=Sequence derived from alignment at tig00000844_pilon:250304..252289- (Gracilaria gracilis GNS1m male)
ATGACTTTCGAAGCTGGTTCTGCTATACTAAGTGTCAATGCAGTCACGGC
GCGTCTCATAGACCGCGGTAGACACTTTCACTTGGTTCACTCGGAGGGCG
AGCAGCCCCTTGGTGGACCCTCGACCGCCGCAATGAACGGGACGCCACTC
ATCACTCGCCAGCCCCAGCCGTACGTCGACTTTGTCAACCCGTCAAACCC
GCCACAACAGAGCGATGCCGTTGCATTTGTTCTCCGCCCGCCTACAGTAC
CGAAAGAGGACTGTGGCCCGTTAAATGAGGCCGTTCATATGGAATGGTTG
AAAGGGCGTGGGGCAGCTTGGATATCGGGCTCCCCCCAACTGCAATACTC
AAAAGAGAACGGCTCGTTTCACATTCGTGTGCTGGACCTCGGTTCTCCAA
CTTCCGACCCATCTGCCACGATTGTGACTGAATCTGGTCTTGCTGCCGCA
CTTGACACCCTGGAGGACGCTGCATTGGACGAGTGCGTATCTCGCCACCT
CACCGAGGGTGGTGACGATCGCCTCCATCTCTCTTCCGCTGGTGTCAACA
AATACTACTGTCCGCCGCGGCCGCTACCCAACGATGTAGTAATTCGCGGA
AGTTGTACTTGTTCCTCTCCTACACCTGATGGCTTTGAAGCTGCACGCCG
TCAATTGCGAAGCTTATGGAGTGGACGAGTGTCTTTCTCGCAGAGCATGG
ATAATATTCGCCGACGATTATCCAAAGTGCTAAAAATATCGGTACCCCAT
CAGGTCATACTTCACCCATCTGGATCTGACGCTGAGCTGATTCCCCTCGT
CATTGCAATTGAGCGTGCCAAAGAGCTTGCATGCTCCAAGGTGGTGAACA
TCGTAGCTGCAGCGGGCGAAGTTGGATCTGGCTCTGCACCGGCTGCAGCA
GGGCGTCATTTTAGCGCGTTTACTCCCTGCGGCAATCCTGTCTCGAACGG
TGATCTTCTGGAGGGCTTCCCGGATACTACAGTTATCGAGGAATTGAAAC
CGCGCTGTTCCGAAGGGAAATACGCAGAGAACTACGATGAGATCGTAAAC
AATATTATTAAGAAGCATGAAAGCTTTGGCGATCGTCCGTTCTTCGTCGT
CCACGCTGTGGATGGCTCTAAGACGGGACTTCGATTACCGAGTTTGGACT
TGTTGTCTATGCTGAAAACAACTTTGGGAGAAAGGTTGCATATTGTGATG
GATGCATGTCAGATGCGTTCGGAGCCCAAAGAAATTGATTGGTTCCTCAG
ACGTGATGCGTCGATATTGGTAACGTCGAGCAAGTTCTACTCCGCACCTG
GGTTCTGCGGTGCGGTTGTTGTGTCTTCCAACTGTGCCAATACTCTGAAA
CACAATACGGCGCCTATTGGGCTACGCGACTATCTTACTCAGTACGAGGT
TCCACCGTGCATCACAGGCTTGCATGATATTCTGCTTCGATACCCGAAAA
ACGTCGGGCTGCTGCTTCGCTGGGAATGCGGTATGACCGAAATGGAGATG
TTTGAAGCGATGGGTATGAGCGTGAAGTTCGCAATGCGGAAGTGGGTGTT
CGCAGTGAGGAAATTGATCTGCGATCGTCGACCTGCACTTGATTTGATTG
ACATTGAATGCGTTGAGAACGATAGAGATGAAACGCGATGTGGCGGGGTG
AACTCAGTGGTGAGCATCAAGTTGCTGGCGAAGGATGGGTGCTCCTATTT
GGATGTGGGTACACTGCGTCGACTCCATCGATACCTGACGATTGACGCGT
CTTCATTGTTACCTGCTGTTGCGAGTGAGACGGAGCGTAAGGTGGCGGCG
CTGCGATGTATGGTGGGTCAGCCGGTCAAATTGGGGAGCTATGGGGTGCT
GAGACTTGCGGTGGGGGCTCCCATGGCTCGTGACCTCGCGCAAGGCGGAC
AAATGGAGAAAACTCTCAAGGATGATGAGAAAATCCTCGAGAAGATGATA
GTGCTGGGAAAGTATTGCGATGAAATGCGTGGTTAG