Ggra1495.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1495.t1
Unique NameGgra1495.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:237460..237945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708467.1
PFAMsMOZ_SAS,Tudor-knot
Max annot lvl2759|Eukaryota
KEGG koko:K11304,ko:K11308
KEGG Pathwayko05166,map05166
GOsGO:0000123,GO:0002376,GO:0002520,GO:0003674,GO:0003824,GO:0004402,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006355,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0008080,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010224,GO:0010468,GO:0010485,GO:0010506,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016407,GO:0016410,GO:0016569,GO:0016570,GO:0016573,GO:0016740,GO:0016746,GO:0016747,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019538,GO:0030097,GO:0030099,GO:0030154,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034212,GO:0034641,GO:0034708,GO:0035064,GO:0035097,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043543,GO:0043967,GO:0043981,GO:0043982,GO:0043984,GO:0043995,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044665,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046483,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048580,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0060255,GO:0061733,GO:0065007,GO:0070013,GO:0071339,GO:0071704,GO:0071840,GO:0072487,GO:0080090,GO:0090304,GO:0140030,GO:0140034,GO:1901360,GO:1901564,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000026,GO:2000028,GO:2000112,GO:2000113,GO:2000241,GO:2001141
Evalue1.7e-67
EggNOG OGsCOG5027@1|root,KOG2747@2759|Eukaryota
EC2.3.1.48
Descriptionhistone acetyltransferase activity
COG categoryB
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1495Ggra1495Gracilaria gracilis GNS1m malegenetig00000844_pilon 237460..237945 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1495.t1.stop1Ggra1495.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 237460..237462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1495.t1.CDS1Ggra1495.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 237460..237945 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1495.t1.exon1Ggra1495.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 237460..237945 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1495.t1.start1Ggra1495.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 237943..237945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1495.t1Ggra1495.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 237460..237945 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1495.t1 ID=Ggra1495.t1|Name=Ggra1495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=162bp
MCEIDQRGAHVVGYFSKEKYSEEDSNVACILTLPPYQRKGYGKFLIFLSY
ELSKLENLVGLPEKPLSDLGLLGYRSYWSQVLVDLLCKEKNSALTIYKIS
EKTMMNTDDIVGTLQALNLIQYYEGQQITDMRRINNMKMGNRGLPCDPTC
IRVLCIIVILM*
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spliced messenger RNA

>Ggra1495.t1 ID=Ggra1495.t1|Name=Ggra1495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000844_pilon:237460..237945- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGAGATCGACCAGCGCGGCGCGCATGTTGTGGGATACTTTTCCAA
GGAAAAGTATAGCGAGGAAGATTCTAACGTCGCCTGTATCCTCACTCTGC
CACCGTATCAGAGAAAGGGTTACGGAAAGTTCCTTATCTTCCTCTCATAC
GAGCTCAGTAAGCTGGAGAATTTGGTCGGCTTGCCTGAGAAACCACTCAG
CGATCTGGGTTTGCTTGGCTACAGAAGTTATTGGTCACAAGTTCTGGTTG
ACCTTCTGTGTAAGGAGAAGAACAGTGCGCTAACCATCTACAAGATATCC
GAGAAGACAATGATGAACACGGATGACATTGTTGGAACGCTGCAAGCACT
CAACTTGATTCAGTACTACGAAGGCCAACAGATCACTGACATGAGGCGCA
TCAACAACATGAAGATGGGCAATCGCGGCTTGCCGTGCGACCCTACCTGC
ATTCGAGTACTCTGCATCATTGTGATACTCATGTAA
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protein sequence of Ggra1495.t1

>Ggra1495.t1 ID=Ggra1495.t1|Name=Ggra1495.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=162bp
MCEIDQRGAHVVGYFSKEKYSEEDSNVACILTLPPYQRKGYGKFLIFLSY
ELSKLENLVGLPEKPLSDLGLLGYRSYWSQVLVDLLCKEKNSALTIYKIS
EKTMMNTDDIVGTLQALNLIQYYEGQQITDMRRINNMKMGNRGLPCDPTC
IRVLCIIVILM*
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mRNA from alignment at tig00000844_pilon:237460..237945-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1495.t1 ID=Ggra1495.t1|Name=Ggra1495.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp|location=Sequence derived from alignment at tig00000844_pilon:237460..237945- (Gracilaria gracilis GNS1m male)
ATGTGCGAGATCGACCAGCGCGGCGCGCATGTTGTGGGATACTTTTCCAA
GGAAAAGTATAGCGAGGAAGATTCTAACGTCGCCTGTATCCTCACTCTGC
CACCGTATCAGAGAAAGGGTTACGGAAAGTTCCTTATCTTCCTCTCATAC
GAGCTCAGTAAGCTGGAGAATTTGGTCGGCTTGCCTGAGAAACCACTCAG
CGATCTGGGTTTGCTTGGCTACAGAAGTTATTGGTCACAAGTTCTGGTTG
ACCTTCTGTGTAAGGAGAAGAACAGTGCGCTAACCATCTACAAGATATCC
GAGAAGACAATGATGAACACGGATGACATTGTTGGAACGCTGCAAGCACT
CAACTTGATTCAGTACTACGAAGGCCAACAGATCACTGACATGAGGCGCA
TCAACAACATGAAGATGGGCAATCGCGGCTTGCCGTGCGACCCTACCTGC
ATTCGAGTACTCTGCATCATTGTGATACTCATGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:237460..237945-

>Ggra1495.t1 ID=Ggra1495.t1|Name=Ggra1495.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=486bp|location=Sequence derived from alignment at tig00000844_pilon:237460..237945- (Gracilaria gracilis GNS1m male)
ATGTGCGAGATCGACCAGCGCGGCGCGCATGTTGTGGGATACTTTTCCAA
GGAAAAGTATAGCGAGGAAGATTCTAACGTCGCCTGTATCCTCACTCTGC
CACCGTATCAGAGAAAGGGTTACGGAAAGTTCCTTATCTTCCTCTCATAC
GAGCTCAGTAAGCTGGAGAATTTGGTCGGCTTGCCTGAGAAACCACTCAG
CGATCTGGGTTTGCTTGGCTACAGAAGTTATTGGTCACAAGTTCTGGTTG
ACCTTCTGTGTAAGGAGAAGAACAGTGCGCTAACCATCTACAAGATATCC
GAGAAGACAATGATGAACACGGATGACATTGTTGGAACGCTGCAAGCACT
CAACTTGATTCAGTACTACGAAGGCCAACAGATCACTGACATGAGGCGCA
TCAACAACATGAAGATGGGCAATCGCGGCTTGCCGTGCGACCCTACCTGC
ATTCGAGTACTCTGCATCATTGTGATACTCATGTAA
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