Ggra1494.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1494.t1
Unique NameGgra1494.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:234454..235503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44689.DDB0304825
PFAMsLCM
Max annot lvl554915|Amoebozoa
KEGG rclassRC00003,RC00460,RC00745
KEGG koko:K15451
KEGG ReactionR10586,R10587
Evalue1.33e-30
EggNOG OGsKOG2918@1|root,KOG2918@2759|Eukaryota,3XERR@554915|Amoebozoa
EC2.1.1.290,2.3.1.231
DescriptionLeucine carboxyl methyltransferase
COG categoryO
BRITEko00000,ko01000,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1494Ggra1494Gracilaria gracilis GNS1m malegenetig00000844_pilon 234454..235503 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1494.t1.stop1Ggra1494.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 234454..234456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1494.t1.CDS1Ggra1494.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 234454..235503 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1494.t1.exon1Ggra1494.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 234454..235503 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1494.t1.start1Ggra1494.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 235501..235503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1494.t1Ggra1494.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 234454..235503 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1494.t1 ID=Ggra1494.t1|Name=Ggra1494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=350bp
MNHPKDLVPDSSGFSFVSYVSAANKGYYDDPYVTSIKARHEMEFLFDTDL
SPDYVYKLSPLSNRNTYVRVLMKRTLVVAFLKNFKDELVQVISLGSGLDT
FPFQLFTKLRSLPTIRYVEIDLQSVVQQKQYLTEGVLTDNSVFDGREWGS
SHFCAWKAHPISLDNSFYHLQSCDLRNLRKLQRTLLDCRIDFSKPTLIFA
EVALVYLEPSRCDDVIRFFAEKFLGPCCFLDFDHVVKEEEFGTSMQKVFA
EMQLPLLGLEKHPSIDSQIKRFTELGWDRCSGLTMYEGLQKRLRKEEMLK
LDEIEKVEEKERSEQILSHYGIILAAKGFSGREGFFASMDLENCRDELV*
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spliced messenger RNA

>Ggra1494.t1 ID=Ggra1494.t1|Name=Ggra1494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000844_pilon:234454..235503- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCATCCAAAGGACTTGGTGCCAGATAGCAGCGGATTTTCATTTGT
ATCGTATGTTTCTGCTGCCAACAAAGGATACTACGACGATCCTTACGTTA
CCTCTATCAAAGCTCGCCATGAGATGGAATTTCTTTTCGACACTGATCTT
TCTCCAGATTATGTTTACAAATTGTCGCCTTTAAGCAATCGGAATACATA
TGTTCGTGTGCTCATGAAGAGAACTCTGGTAGTGGCCTTCCTGAAGAACT
TTAAGGACGAATTGGTGCAAGTGATCTCGCTGGGATCCGGGCTGGATACC
TTCCCCTTTCAACTGTTTACAAAGCTTCGATCACTACCAACTATCCGATA
TGTTGAAATTGATCTGCAATCTGTTGTGCAGCAGAAGCAATATTTGACTG
AAGGCGTTCTAACGGATAATTCGGTTTTCGATGGTAGAGAGTGGGGATCG
TCACATTTCTGTGCTTGGAAAGCACATCCAATTTCTCTTGACAACTCGTT
TTACCATCTTCAGTCCTGCGACCTTCGCAATCTCCGAAAGCTGCAACGCA
CGTTGTTGGATTGCAGAATCGATTTCTCAAAACCCACTCTCATATTTGCA
GAGGTTGCATTGGTTTACTTGGAACCAAGTCGCTGCGATGATGTCATCAG
GTTTTTCGCAGAAAAGTTTCTAGGACCTTGCTGTTTTCTCGACTTTGACC
ACGTGGTTAAAGAAGAAGAGTTTGGAACCAGCATGCAGAAAGTCTTTGCC
GAGATGCAGCTCCCACTTCTAGGACTAGAAAAGCATCCATCTATCGACTC
GCAAATCAAGAGATTCACAGAGCTTGGTTGGGACCGCTGCTCCGGGCTTA
CAATGTATGAAGGACTTCAGAAAAGATTGAGGAAAGAAGAGATGCTAAAA
CTGGATGAGATAGAAAAGGTCGAGGAAAAGGAGCGATCAGAACAAATTCT
TTCCCACTATGGAATAATCCTTGCTGCAAAAGGATTCAGCGGCAGAGAGG
GCTTCTTTGCTTCAATGGATCTGGAAAACTGTAGGGATGAACTCGTGTAA
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protein sequence of Ggra1494.t1

>Ggra1494.t1 ID=Ggra1494.t1|Name=Ggra1494.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=350bp
MNHPKDLVPDSSGFSFVSYVSAANKGYYDDPYVTSIKARHEMEFLFDTDL
SPDYVYKLSPLSNRNTYVRVLMKRTLVVAFLKNFKDELVQVISLGSGLDT
FPFQLFTKLRSLPTIRYVEIDLQSVVQQKQYLTEGVLTDNSVFDGREWGS
SHFCAWKAHPISLDNSFYHLQSCDLRNLRKLQRTLLDCRIDFSKPTLIFA
EVALVYLEPSRCDDVIRFFAEKFLGPCCFLDFDHVVKEEEFGTSMQKVFA
EMQLPLLGLEKHPSIDSQIKRFTELGWDRCSGLTMYEGLQKRLRKEEMLK
LDEIEKVEEKERSEQILSHYGIILAAKGFSGREGFFASMDLENCRDELV*
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mRNA from alignment at tig00000844_pilon:234454..235503-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1494.t1 ID=Ggra1494.t1|Name=Ggra1494.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1050bp|location=Sequence derived from alignment at tig00000844_pilon:234454..235503- (Gracilaria gracilis GNS1m male)
ATGAACCATCCAAAGGACTTGGTGCCAGATAGCAGCGGATTTTCATTTGT
ATCGTATGTTTCTGCTGCCAACAAAGGATACTACGACGATCCTTACGTTA
CCTCTATCAAAGCTCGCCATGAGATGGAATTTCTTTTCGACACTGATCTT
TCTCCAGATTATGTTTACAAATTGTCGCCTTTAAGCAATCGGAATACATA
TGTTCGTGTGCTCATGAAGAGAACTCTGGTAGTGGCCTTCCTGAAGAACT
TTAAGGACGAATTGGTGCAAGTGATCTCGCTGGGATCCGGGCTGGATACC
TTCCCCTTTCAACTGTTTACAAAGCTTCGATCACTACCAACTATCCGATA
TGTTGAAATTGATCTGCAATCTGTTGTGCAGCAGAAGCAATATTTGACTG
AAGGCGTTCTAACGGATAATTCGGTTTTCGATGGTAGAGAGTGGGGATCG
TCACATTTCTGTGCTTGGAAAGCACATCCAATTTCTCTTGACAACTCGTT
TTACCATCTTCAGTCCTGCGACCTTCGCAATCTCCGAAAGCTGCAACGCA
CGTTGTTGGATTGCAGAATCGATTTCTCAAAACCCACTCTCATATTTGCA
GAGGTTGCATTGGTTTACTTGGAACCAAGTCGCTGCGATGATGTCATCAG
GTTTTTCGCAGAAAAGTTTCTAGGACCTTGCTGTTTTCTCGACTTTGACC
ACGTGGTTAAAGAAGAAGAGTTTGGAACCAGCATGCAGAAAGTCTTTGCC
GAGATGCAGCTCCCACTTCTAGGACTAGAAAAGCATCCATCTATCGACTC
GCAAATCAAGAGATTCACAGAGCTTGGTTGGGACCGCTGCTCCGGGCTTA
CAATGTATGAAGGACTTCAGAAAAGATTGAGGAAAGAAGAGATGCTAAAA
CTGGATGAGATAGAAAAGGTCGAGGAAAAGGAGCGATCAGAACAAATTCT
TTCCCACTATGGAATAATCCTTGCTGCAAAAGGATTCAGCGGCAGAGAGG
GCTTCTTTGCTTCAATGGATCTGGAAAACTGTAGGGATGAACTCGTGTAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:234454..235503-

>Ggra1494.t1 ID=Ggra1494.t1|Name=Ggra1494.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1050bp|location=Sequence derived from alignment at tig00000844_pilon:234454..235503- (Gracilaria gracilis GNS1m male)
ATGAACCATCCAAAGGACTTGGTGCCAGATAGCAGCGGATTTTCATTTGT
ATCGTATGTTTCTGCTGCCAACAAAGGATACTACGACGATCCTTACGTTA
CCTCTATCAAAGCTCGCCATGAGATGGAATTTCTTTTCGACACTGATCTT
TCTCCAGATTATGTTTACAAATTGTCGCCTTTAAGCAATCGGAATACATA
TGTTCGTGTGCTCATGAAGAGAACTCTGGTAGTGGCCTTCCTGAAGAACT
TTAAGGACGAATTGGTGCAAGTGATCTCGCTGGGATCCGGGCTGGATACC
TTCCCCTTTCAACTGTTTACAAAGCTTCGATCACTACCAACTATCCGATA
TGTTGAAATTGATCTGCAATCTGTTGTGCAGCAGAAGCAATATTTGACTG
AAGGCGTTCTAACGGATAATTCGGTTTTCGATGGTAGAGAGTGGGGATCG
TCACATTTCTGTGCTTGGAAAGCACATCCAATTTCTCTTGACAACTCGTT
TTACCATCTTCAGTCCTGCGACCTTCGCAATCTCCGAAAGCTGCAACGCA
CGTTGTTGGATTGCAGAATCGATTTCTCAAAACCCACTCTCATATTTGCA
GAGGTTGCATTGGTTTACTTGGAACCAAGTCGCTGCGATGATGTCATCAG
GTTTTTCGCAGAAAAGTTTCTAGGACCTTGCTGTTTTCTCGACTTTGACC
ACGTGGTTAAAGAAGAAGAGTTTGGAACCAGCATGCAGAAAGTCTTTGCC
GAGATGCAGCTCCCACTTCTAGGACTAGAAAAGCATCCATCTATCGACTC
GCAAATCAAGAGATTCACAGAGCTTGGTTGGGACCGCTGCTCCGGGCTTA
CAATGTATGAAGGACTTCAGAAAAGATTGAGGAAAGAAGAGATGCTAAAA
CTGGATGAGATAGAAAAGGTCGAGGAAAAGGAGCGATCAGAACAAATTCT
TTCCCACTATGGAATAATCCTTGCTGCAAAAGGATTCAGCGGCAGAGAGG
GCTTCTTTGCTTCAATGGATCTGGAAAACTGTAGGGATGAACTCGTGTAA
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