Ggra1492.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1492.t1
Unique NameGgra1492.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length334
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:228416..230557 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007154080.1
PFAMsPRA1,Ribosomal_S19
Max annot lvl35493|Streptophyta
KEGG koko:K02958
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904
Evalue3.7e-50
EggNOG OGsCOG0185@1|root,KOG0898@2759|Eukaryota,37KZ9@33090|Viridiplantae,3GA7S@35493|Streptophyta,4JFBE@91835|fabids
DescriptionRIBOSOMAL protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1492Ggra1492Gracilaria gracilis GNS1m malegenetig00000844_pilon 228416..230557 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1Ggra1492.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 228416..230557 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1.start1Ggra1492.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 228416..228418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1.CDS1Ggra1492.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 228416..228655 +
Ggra1492.t1.CDS2Ggra1492.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 228794..228941 +
Ggra1492.t1.CDS3Ggra1492.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000844_pilon 229944..230557 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1.exon1Ggra1492.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 228416..228655 +
Ggra1492.t1.exon2Ggra1492.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 228794..228941 +
Ggra1492.t1.exon3Ggra1492.t1.exon3Gracilaria gracilis GNS1m maleexontig00000844_pilon 229944..230557 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1.intron1Ggra1492.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 228656..228793 +
Ggra1492.t1.intron2Ggra1492.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000844_pilon 228942..229943 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1492.t1.stop1Ggra1492.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 230555..230557 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1492.t1 ID=Ggra1492.t1|Name=Ggra1492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MQVQPKRRTFKKFTFRGVDLDALLTMKPVELLPLLSSRARRKFNRGITRK
PMALIKKLNKAKKEAAEHEKPDVVKTHLRNMIVVPEMIGSVIGVYNGKTF
NAVEIKPEMIGTYLGEYSCTYKFVRHGRPEIFWLSLLEKCCLLKSKEGFK
ISFRKVNRSDEEPAFLAYSSPNMGILEAGFSIVPSPNCPHISDSGFVVHP
DLSPDPRTAGKGRRQNRFLKYQCCKTCGDADEGWVCIVCCFPGCSRYKQG
HMVKHAEDEDRENTHPVVAISLSDLSFWCFNCDTYITHPKLEKPFQEFHR
GKFGQLPSGNLHIQDSTTPNVILESNAKDGKSE*
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spliced messenger RNA

>Ggra1492.t1 ID=Ggra1492.t1|Name=Ggra1492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000844_pilon:228416..230557+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTTCAACCGAAGCGCAGGACTTTCAAGAAGTTCACTTTTCGTGG
AGTGGATCTCGATGCACTGCTCACCATGAAACCCGTCGAGCTTCTTCCCT
TGCTTTCATCGCGTGCTCGCAGAAAGTTCAACCGGGGAATCACCCGGAAA
CCTATGGCTTTGATCAAGAAGCTGAACAAGGCTAAGAAAGAGGCTGCTGA
ACATGAGAAGCCAGACGTTGTTAAGACTCATCTTCGAAACATGATCGTCG
TTCCAGAGATGATCGGATCTGTTATCGGCGTATACAATGGCAAGACATTC
AACGCGGTTGAGATCAAGCCGGAAATGATTGGGACCTACCTTGGCGAGTA
CAGCTGCACCTACAAGTTTGTGCGCCATGGAAGGCCAGAAATCTTCTGGC
TATCCCTTTTAGAAAAATGCTGCCTGTTAAAATCCAAGGAGGGTTTTAAG
ATCAGTTTTCGCAAGGTGAACAGAAGCGACGAAGAACCTGCGTTTCTCGC
TTATTCAAGTCCCAACATGGGTATCTTGGAGGCTGGTTTCTCGATTGTTC
CCTCACCAAACTGCCCACACATATCTGATTCTGGATTTGTTGTTCACCCT
GACCTCAGTCCCGATCCGCGCACAGCTGGAAAAGGAAGGAGGCAGAATCG
GTTCCTCAAGTATCAATGCTGCAAAACTTGTGGAGATGCAGACGAAGGAT
GGGTATGTATCGTTTGCTGCTTTCCGGGATGCAGTCGCTACAAGCAAGGT
CATATGGTGAAGCATGCCGAAGATGAAGATCGAGAAAACACTCATCCAGT
TGTTGCCATCAGTCTGTCCGACCTGAGCTTTTGGTGTTTCAACTGTGACA
CCTACATCACGCATCCTAAACTTGAAAAGCCATTTCAGGAGTTCCATCGT
GGAAAGTTTGGCCAACTCCCATCCGGAAATTTACACATTCAGGACTCTAC
TACACCAAACGTAATCCTCGAAAGCAATGCCAAAGACGGCAAGTCAGAGT
GA
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protein sequence of Ggra1492.t1

>Ggra1492.t1 ID=Ggra1492.t1|Name=Ggra1492.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MQVQPKRRTFKKFTFRGVDLDALLTMKPVELLPLLSSRARRKFNRGITRK
PMALIKKLNKAKKEAAEHEKPDVVKTHLRNMIVVPEMIGSVIGVYNGKTF
NAVEIKPEMIGTYLGEYSCTYKFVRHGRPEIFWLSLLEKCCLLKSKEGFK
ISFRKVNRSDEEPAFLAYSSPNMGILEAGFSIVPSPNCPHISDSGFVVHP
DLSPDPRTAGKGRRQNRFLKYQCCKTCGDADEGWVCIVCCFPGCSRYKQG
HMVKHAEDEDRENTHPVVAISLSDLSFWCFNCDTYITHPKLEKPFQEFHR
GKFGQLPSGNLHIQDSTTPNVILESNAKDGKSE*
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mRNA from alignment at tig00000844_pilon:228416..230557+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1492.t1 ID=Ggra1492.t1|Name=Ggra1492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2142bp|location=Sequence derived from alignment at tig00000844_pilon:228416..230557+ (Gracilaria gracilis GNS1m male)
ATGCAGGTTCAACCGAAGCGCAGGACTTTCAAGAAGTTCACTTTTCGTGG
AGTGGATCTCGATGCACTGCTCACCATGAAACCCGTCGAGCTTCTTCCCT
TGCTTTCATCGCGTGCTCGCAGAAAGTTCAACCGGGGAATCACCCGGAAA
CCTATGGCTTTGATCAAGAAGCTGAACAAGGCTAAGAAAGAGGCTGCTGA
ACATGAGAAGCCAGACGTTGTTAAGACTCATCTTCGAAACGTAAGTTCAT
ACGAATGCACCTTAAAGCGAACGCCGAAATCGTCATTTCTTGCCGCGATA
GCCCTGTTAGTAACCGATTTGCTGACTCTTTTGTTGAATGTTTGTTTTAC
TTCATCGTTCCGCGATTGCTTTGAGCAGATGATCGTCGTTCCAGAGATGA
TCGGATCTGTTATCGGCGTATACAATGGCAAGACATTCAACGCGGTTGAG
ATCAAGCCGGAAATGATTGGGACCTACCTTGGCGAGTACAGCTGCACCTA
CAAGTTTGTGCGCCATGGAAGGCCAGGTATTGGTGCCACCCACTCTTCGC
GGTTCATTCCATTGAAGTAGATGTTATATTGGGTTGTCAAATCGTTCACC
TGAGGCGCTTGGAAATCTACGCTTCTAATTCATGTAAATGATTCATGAAC
AAACTGTTTCTTCACAGATCGCGTGTTCTTCGTTCGTCCTGGTGCGGCGA
TGTCGCAATTCACATTTGTGAATCTTTGCATAGCTTCATCCGATCTGGTG
AGTGCGTAAGTCCGCGGTCAGTAAAGAACGTCTCCAGGTAGGCGGCAAAT
ATATGACTAGACTAGGTCTTCTGAGCCTTTGAGTAGTTGAACGCCCCGGT
CGAGCGCAGCATAGTCACAATCGAGCAGATTCCTTTCGAGGAATAAGAAC
AGCATTCCACACGCAAACGCATGAAATCTATATGGTACTGACTCGGTAAC
GGGCAAGCAGTGTTCACACGTCAATACCCGAAAACTTATTCGGCCACTCC
TGAATTCTGGACGTCAGCATCGTACGTCCTTAAGAAGGCGATGTATACAG
ACACCAAGCAGATAGGATTCATATATTTTTCCCCCACTTCTTTCGGGTTG
CACAAGGTCAATTtctctctaactctcgtttatgaaaagcgtactacctt
cgtatgctattactcgtacgcgtgggttattgaagaccgaacaactggta
acactttcataccgtagcgggggggtcgacttgtcaccatggacaagcca
caatttattgtgctcactttccctGTAAAAGGGCAACAGAGTTCAATTGC
TACCAGTCAGAACATTCTGTATTGAGAAACGTTTTCTCCAGAGGTAGGCG
AGCAAGTTTTGCGGACATTCCCCAACAATCTCACAAACTGGTAATCCTCG
ACGTGGACGGAGAGTTGAGAACAACAACAACAAAATCCTTTGACATCTTC
GAAAGAAATGCTCAACGTTTAGCACCTCGGTCACGTCTATCAACATCAAC
AACTCCTGTCCGTGGTCTTTCGGTGCAGAAATCTTCTGGCTATCCCTTTT
AGAAAAATGCTGCCTGTTAAAATCCAAGGAGGGTTTTAAGATCAGTTTTC
GCAAGGTGAACAGAAGCGACGAAGAACCTGCGTTTCTCGCTTATTCAAGT
CCCAACATGGGTATCTTGGAGGCTGGTTTCTCGATTGTTCCCTCACCAAA
CTGCCCACACATATCTGATTCTGGATTTGTTGTTCACCCTGACCTCAGTC
CCGATCCGCGCACAGCTGGAAAAGGAAGGAGGCAGAATCGGTTCCTCAAG
TATCAATGCTGCAAAACTTGTGGAGATGCAGACGAAGGATGGGTATGTAT
CGTTTGCTGCTTTCCGGGATGCAGTCGCTACAAGCAAGGTCATATGGTGA
AGCATGCCGAAGATGAAGATCGAGAAAACACTCATCCAGTTGTTGCCATC
AGTCTGTCCGACCTGAGCTTTTGGTGTTTCAACTGTGACACCTACATCAC
GCATCCTAAACTTGAAAAGCCATTTCAGGAGTTCCATCGTGGAAAGTTTG
GCCAACTCCCATCCGGAAATTTACACATTCAGGACTCTACTACACCAAAC
GTAATCCTCGAAAGCAATGCCAAAGACGGCAAGTCAGAGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:228416..230557+

>Ggra1492.t1 ID=Ggra1492.t1|Name=Ggra1492.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000844_pilon:228416..230557+ (Gracilaria gracilis GNS1m male)
ATGCAGGTTCAACCGAAGCGCAGGACTTTCAAGAAGTTCACTTTTCGTGG
AGTGGATCTCGATGCACTGCTCACCATGAAACCCGTCGAGCTTCTTCCCT
TGCTTTCATCGCGTGCTCGCAGAAAGTTCAACCGGGGAATCACCCGGAAA
CCTATGGCTTTGATCAAGAAGCTGAACAAGGCTAAGAAAGAGGCTGCTGA
ACATGAGAAGCCAGACGTTGTTAAGACTCATCTTCGAAACATGATCGTCG
TTCCAGAGATGATCGGATCTGTTATCGGCGTATACAATGGCAAGACATTC
AACGCGGTTGAGATCAAGCCGGAAATGATTGGGACCTACCTTGGCGAGTA
CAGCTGCACCTACAAGTTTGTGCGCCATGGAAGGCCAGAAATCTTCTGGC
TATCCCTTTTAGAAAAATGCTGCCTGTTAAAATCCAAGGAGGGTTTTAAG
ATCAGTTTTCGCAAGGTGAACAGAAGCGACGAAGAACCTGCGTTTCTCGC
TTATTCAAGTCCCAACATGGGTATCTTGGAGGCTGGTTTCTCGATTGTTC
CCTCACCAAACTGCCCACACATATCTGATTCTGGATTTGTTGTTCACCCT
GACCTCAGTCCCGATCCGCGCACAGCTGGAAAAGGAAGGAGGCAGAATCG
GTTCCTCAAGTATCAATGCTGCAAAACTTGTGGAGATGCAGACGAAGGAT
GGGTATGTATCGTTTGCTGCTTTCCGGGATGCAGTCGCTACAAGCAAGGT
CATATGGTGAAGCATGCCGAAGATGAAGATCGAGAAAACACTCATCCAGT
TGTTGCCATCAGTCTGTCCGACCTGAGCTTTTGGTGTTTCAACTGTGACA
CCTACATCACGCATCCTAAACTTGAAAAGCCATTTCAGGAGTTCCATCGT
GGAAAGTTTGGCCAACTCCCATCCGGAAATTTACACATTCAGGACTCTAC
TACACCAAACGTAATCCTCGAAAGCAATGCCAAAGACGGCAAGTCAGAGT
GA
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