Ggra1490.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1490.t1
Unique NameGgra1490.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:226637..227366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005846484.1
PFAMsPQ-loop
Max annot lvl3041|Chlorophyta
KEGG koko:K09660
Evalue5.01e-05
EggNOG OGsKOG3211@1|root,KOG3211@2759|Eukaryota,37MYS@33090|Viridiplantae,34IH0@3041|Chlorophyta
DescriptionMannose-P-dolichol utilization defect 1 protein
COG categoryS
BRITEko00000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1490Ggra1490Gracilaria gracilis GNS1m malegenetig00000844_pilon 226637..227366 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1Ggra1490.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 226637..227366 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1.start1Ggra1490.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 226637..226639 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1.CDS1Ggra1490.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 226637..226774 +
Ggra1490.t1.CDS2Ggra1490.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000844_pilon 226860..227366 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1.exon1Ggra1490.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 226637..226774 +
Ggra1490.t1.exon2Ggra1490.t1.exon2Gracilaria gracilis GNS1m maleexontig00000844_pilon 226860..227366 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1.intron1Ggra1490.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000844_pilon 226775..226859 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1490.t1.stop1Ggra1490.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 227364..227366 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1490.t1 ID=Ggra1490.t1|Name=Ggra1490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MTAAQFLPRQQLAPPNIAPRIGKHLLRFQQGDPSTSSAPAPTSYKTLEAM
AKKTVTKVLSLALDLVQVACALVVIVITSWRLLDVTRDGLDFQSNCLLDG
SGREGTFTGTQFCAYVILVGGISLIFNAVVGCARNICKCLTVGAFGASRL
ISIAGDTILTIWWGVAFYFVVRRGVAANNADWPERAARDGVIAATFGAMA
AYAADIIVGFFSFA*
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spliced messenger RNA

>Ggra1490.t1 ID=Ggra1490.t1|Name=Ggra1490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000844_pilon:226637..227366+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCGGCGCAGTTTCTCCCCAGGCAGCAGCTGGCGCCCCCGAACAT
TGCACCCCGAATTGGGAAGCACCTGCTCCGCTTCCAGCAGGGTGACCCTT
CGACGTCATCAGCCCCAGCCCCTACCTCATATAAGACCCTTGAAGCAATG
GCCAAGAAGACAGTCACCAAGGTCCTCAGCCTGGCGCTGGACCTAGTCCA
AGTCGCGTGCGCGCTCGTCGTGATCGTCATAACCAGCTGGCGCCTACTGG
ACGTCACTCGCGACGGATTAGACTTTCAGTCAAACTGTCTACTAGATGGT
TCAGGTCGCGAAGGAACATTCACAGGCACTCAGTTCTGCGCGTACGTCAT
TTTAGTCGGTGGCATTTCGCTCATTTTCAATGCCGTTGTCGGATGTGCGC
GCAACATCTGCAAATGTCTCACCGTGGGCGCTTTTGGCGCTTCTAGACTG
ATTTCTATAGCGGGCGATACCATCTTAACTATTTGGTGGGGTGTCGCGTT
CTACTTTGTTGTTCGACGGGGAGTCGCAGCGAATAATGCAGACTGGCCTG
AGAGAGCTGCTCGGGATGGCGTTATTGCTGCTACATTTGGCGCTATGGCC
GCTTATGCTGCGGATATTATTGTGGGCTTCTTTTCGTTCGCATGA
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protein sequence of Ggra1490.t1

>Ggra1490.t1 ID=Ggra1490.t1|Name=Ggra1490.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MTAAQFLPRQQLAPPNIAPRIGKHLLRFQQGDPSTSSAPAPTSYKTLEAM
AKKTVTKVLSLALDLVQVACALVVIVITSWRLLDVTRDGLDFQSNCLLDG
SGREGTFTGTQFCAYVILVGGISLIFNAVVGCARNICKCLTVGAFGASRL
ISIAGDTILTIWWGVAFYFVVRRGVAANNADWPERAARDGVIAATFGAMA
AYAADIIVGFFSFA*
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mRNA from alignment at tig00000844_pilon:226637..227366+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1490.t1 ID=Ggra1490.t1|Name=Ggra1490.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=730bp|location=Sequence derived from alignment at tig00000844_pilon:226637..227366+ (Gracilaria gracilis GNS1m male)
ATGACCGCGGCGCAGTTTCTCCCCAGGCAGCAGCTGGCGCCCCCGAACAT
TGCACCCCGAATTGGGAAGCACCTGCTCCGCTTCCAGCAGGGTGACCCTT
CGACGTCATCAGCCCCAGCCCCTACCTCATATAAGACCGTGCTCCCATTT
CGTGCCTACCCCTTGTTCAACATATCTCACCACCACACGCTTCGACAACA
GTTCCCTTTATTCTCATTCTTAGCTTGAAGCAATGGCCAAGAAGACAGTC
ACCAAGGTCCTCAGCCTGGCGCTGGACCTAGTCCAAGTCGCGTGCGCGCT
CGTCGTGATCGTCATAACCAGCTGGCGCCTACTGGACGTCACTCGCGACG
GATTAGACTTTCAGTCAAACTGTCTACTAGATGGTTCAGGTCGCGAAGGA
ACATTCACAGGCACTCAGTTCTGCGCGTACGTCATTTTAGTCGGTGGCAT
TTCGCTCATTTTCAATGCCGTTGTCGGATGTGCGCGCAACATCTGCAAAT
GTCTCACCGTGGGCGCTTTTGGCGCTTCTAGACTGATTTCTATAGCGGGC
GATACCATCTTAACTATTTGGTGGGGTGTCGCGTTCTACTTTGTTGTTCG
ACGGGGAGTCGCAGCGAATAATGCAGACTGGCCTGAGAGAGCTGCTCGGG
ATGGCGTTATTGCTGCTACATTTGGCGCTATGGCCGCTTATGCTGCGGAT
ATTATTGTGGGCTTCTTTTCGTTCGCATGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:226637..227366+

>Ggra1490.t1 ID=Ggra1490.t1|Name=Ggra1490.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000844_pilon:226637..227366+ (Gracilaria gracilis GNS1m male)
ATGACCGCGGCGCAGTTTCTCCCCAGGCAGCAGCTGGCGCCCCCGAACAT
TGCACCCCGAATTGGGAAGCACCTGCTCCGCTTCCAGCAGGGTGACCCTT
CGACGTCATCAGCCCCAGCCCCTACCTCATATAAGACCCTTGAAGCAATG
GCCAAGAAGACAGTCACCAAGGTCCTCAGCCTGGCGCTGGACCTAGTCCA
AGTCGCGTGCGCGCTCGTCGTGATCGTCATAACCAGCTGGCGCCTACTGG
ACGTCACTCGCGACGGATTAGACTTTCAGTCAAACTGTCTACTAGATGGT
TCAGGTCGCGAAGGAACATTCACAGGCACTCAGTTCTGCGCGTACGTCAT
TTTAGTCGGTGGCATTTCGCTCATTTTCAATGCCGTTGTCGGATGTGCGC
GCAACATCTGCAAATGTCTCACCGTGGGCGCTTTTGGCGCTTCTAGACTG
ATTTCTATAGCGGGCGATACCATCTTAACTATTTGGTGGGGTGTCGCGTT
CTACTTTGTTGTTCGACGGGGAGTCGCAGCGAATAATGCAGACTGGCCTG
AGAGAGCTGCTCGGGATGGCGTTATTGCTGCTACATTTGGCGCTATGGCC
GCTTATGCTGCGGATATTATTGTGGGCTTCTTTTCGTTCGCATGA
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