Ggra1486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1486.t1
Unique NameGgra1486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length201
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:215714..216316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1486Ggra1486Gracilaria gracilis GNS1m malegenetig00000844_pilon 215714..216316 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1486.t1.stop1Ggra1486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 215714..215716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1486.t1.CDS1Ggra1486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 215714..216316 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1486.t1.exon1Ggra1486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 215714..216316 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1486.t1.start1Ggra1486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 216314..216316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1486.t1Ggra1486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 215714..216316 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1486.t1 ID=Ggra1486.t1|Name=Ggra1486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=201bp
MTKSGISRHLRRLRARWRLHRMEWEGMHRPLRPPQGYERFHSEEAVFPGV
HMKRKRKRNLKENIDVAKRAWKLYLHSYIPNPEMAEMERKMLEKESMIIR
RHAQAVLRRSEANIKRNQRAAREASEHVTKEFQARRPEAEALMKDRVNVL
REAVSEFAEGYAEGVEGQFSFFKDSEDDDDYPPHVLTEDNKPVIYMSEKI
*
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spliced messenger RNA

>Ggra1486.t1 ID=Ggra1486.t1|Name=Ggra1486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000844_pilon:215714..216316- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAAAATCAGGTATATCACGCCATTTGAGAAGATTGCGAGCTAGATG
GAGGCTGCACCGAATGGAATGGGAAGGAATGCACAGACCCCTGCGTCCAC
CACAGGGGTATGAACGCTTTCATTCGGAGGAGGCTGTTTTTCCTGGGGTG
CATATGAAACGGAAGAGAAAGAGAAATCTCAAAGAAAACATAGACGTCGC
CAAAAGGGCGTGGAAACTATATCTTCATTCTTATATTCCCAATCCTGAGA
TGGCGGAAATGGAAAGAAAGATGTTGGAGAAAGAAAGCATGATCATCAGA
CGACATGCACAAGCGGTCTTAAGAAGATCCGAAGCAAATATCAAACGCAA
CCAACGAGCTGCTCGAGAAGCTTCTGAACATGTCACAAAAGAGTTTCAAG
CCAGAAGACCGGAGGCCGAAGCACTCATGAAGGACAGAGTAAACGTGCTG
CGTGAAGCTGTATCTGAATTTGCAGAGGGTTATGCTGAAGGTGTTGAAGG
CCAGTTTAGTTTTTTCAAAGACAGTGAAGATGACGATGACTATCCGCCTC
ATGTCCTTACTGAGGACAACAAACCAGTAATCTATATGAGTGAGAAAATC
TAA
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protein sequence of Ggra1486.t1

>Ggra1486.t1 ID=Ggra1486.t1|Name=Ggra1486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=201bp
MTKSGISRHLRRLRARWRLHRMEWEGMHRPLRPPQGYERFHSEEAVFPGV
HMKRKRKRNLKENIDVAKRAWKLYLHSYIPNPEMAEMERKMLEKESMIIR
RHAQAVLRRSEANIKRNQRAAREASEHVTKEFQARRPEAEALMKDRVNVL
REAVSEFAEGYAEGVEGQFSFFKDSEDDDDYPPHVLTEDNKPVIYMSEKI
*
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mRNA from alignment at tig00000844_pilon:215714..216316-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1486.t1 ID=Ggra1486.t1|Name=Ggra1486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=603bp|location=Sequence derived from alignment at tig00000844_pilon:215714..216316- (Gracilaria gracilis GNS1m male)
ATGACAAAATCAGGTATATCACGCCATTTGAGAAGATTGCGAGCTAGATG
GAGGCTGCACCGAATGGAATGGGAAGGAATGCACAGACCCCTGCGTCCAC
CACAGGGGTATGAACGCTTTCATTCGGAGGAGGCTGTTTTTCCTGGGGTG
CATATGAAACGGAAGAGAAAGAGAAATCTCAAAGAAAACATAGACGTCGC
CAAAAGGGCGTGGAAACTATATCTTCATTCTTATATTCCCAATCCTGAGA
TGGCGGAAATGGAAAGAAAGATGTTGGAGAAAGAAAGCATGATCATCAGA
CGACATGCACAAGCGGTCTTAAGAAGATCCGAAGCAAATATCAAACGCAA
CCAACGAGCTGCTCGAGAAGCTTCTGAACATGTCACAAAAGAGTTTCAAG
CCAGAAGACCGGAGGCCGAAGCACTCATGAAGGACAGAGTAAACGTGCTG
CGTGAAGCTGTATCTGAATTTGCAGAGGGTTATGCTGAAGGTGTTGAAGG
CCAGTTTAGTTTTTTCAAAGACAGTGAAGATGACGATGACTATCCGCCTC
ATGTCCTTACTGAGGACAACAAACCAGTAATCTATATGAGTGAGAAAATC
TAA
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Coding sequence (CDS) from alignment at tig00000844_pilon:215714..216316-

>Ggra1486.t1 ID=Ggra1486.t1|Name=Ggra1486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=603bp|location=Sequence derived from alignment at tig00000844_pilon:215714..216316- (Gracilaria gracilis GNS1m male)
ATGACAAAATCAGGTATATCACGCCATTTGAGAAGATTGCGAGCTAGATG
GAGGCTGCACCGAATGGAATGGGAAGGAATGCACAGACCCCTGCGTCCAC
CACAGGGGTATGAACGCTTTCATTCGGAGGAGGCTGTTTTTCCTGGGGTG
CATATGAAACGGAAGAGAAAGAGAAATCTCAAAGAAAACATAGACGTCGC
CAAAAGGGCGTGGAAACTATATCTTCATTCTTATATTCCCAATCCTGAGA
TGGCGGAAATGGAAAGAAAGATGTTGGAGAAAGAAAGCATGATCATCAGA
CGACATGCACAAGCGGTCTTAAGAAGATCCGAAGCAAATATCAAACGCAA
CCAACGAGCTGCTCGAGAAGCTTCTGAACATGTCACAAAAGAGTTTCAAG
CCAGAAGACCGGAGGCCGAAGCACTCATGAAGGACAGAGTAAACGTGCTG
CGTGAAGCTGTATCTGAATTTGCAGAGGGTTATGCTGAAGGTGTTGAAGG
CCAGTTTAGTTTTTTCAAAGACAGTGAAGATGACGATGACTATCCGCCTC
ATGTCCTTACTGAGGACAACAAACCAGTAATCTATATGAGTGAGAAAATC
TAA
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