Ggra1485.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1485.t1
Unique NameGgra1485.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length320
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:214699..215658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1485Ggra1485Gracilaria gracilis GNS1m malegenetig00000844_pilon 214699..215658 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1485.t1.start1Ggra1485.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 214699..214701 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1485.t1.CDS1Ggra1485.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 214699..215658 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1485.t1.exon1Ggra1485.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 214699..215658 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1485.t1.stop1Ggra1485.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 215656..215658 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1485.t1Ggra1485.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 214699..215658 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1485.t1 ID=Ggra1485.t1|Name=Ggra1485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=320bp
MSAAAIEADGSGIHAKKDASHGAFYSGFVKGMVAAVDGIKLFARSEVLQK
QFWQLMKPIRNAQIAYGSAGVLLFLILRDPADDITELFWTISRWGRIVTV
LTSIILEYQYGATSAMFFAALKERDPEFGAAVENRPKTRKSFREKLSGFK
RAAKLTMFKLAGAIVQRVFPGGKYIAVPAIKFISIRPVLGTGIAAAVSAV
HAIPAEILESSRVDDVLVSFGEAVVDADEAGEESVADYTKRLESTEMRTY
FFKRYRGYLAGCGFVYSLLSAVPFLGIPLTLISECGAACLVTEIVQRNLD
KEFRKPLTCEEAIQDKKQS*
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spliced messenger RNA

>Ggra1485.t1 ID=Ggra1485.t1|Name=Ggra1485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000844_pilon:214699..215658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTGCCGCGATCGAAGCTGATGGTTCAGGTATTCACGCAAAGAA
AGATGCGTCGCACGGTGCTTTCTATTCAGGCTTCGTAAAGGGAATGGTCG
CTGCTGTAGATGGTATTAAGCTCTTTGCTCGGTCTGAGGTCCTCCAAAAA
CAATTCTGGCAACTCATGAAACCCATTCGCAACGCCCAAATTGCATACGG
CTCAGCGGGAGTTCTCTTGTTCCTGATTCTCCGTGATCCGGCAGATGACA
TTACTGAGCTCTTCTGGACTATTTCTCGCTGGGGTCGTATTGTCACGGTA
CTTACGTCCATCATACTGGAATATCAGTATGGTGCTACCTCTGCTATGTT
TTTCGCCGCCCTGAAAGAGCGTGATCCAGAGTTTGGTGCAGCTGTTGAAA
ATCGCCCGAAGACGCGAAAAAGCTTTCGTGAGAAACTTTCTGGTTTTAAA
CGCGCGGCGAAGTTAACGATGTTCAAACTCGCTGGTGCCATCGTACAGAG
AGTATTTCCGGGTGGTAAGTACATCGCAGTGCCAGCTATCAAATTTATAT
CGATCAGACCTGTTCTGGGTACTGGTATAGCTGCAGCAGTTTCGGCAGTC
CACGCCATCCCTGCCGAAATACTTGAGTCATCTCGTGTAGATGATGTCTT
AGTTTCCTTCGGGGAAGCAGTTGTTGACGCTGATGAAGCGGGCGAGGAAT
CTGTGGCGGATTACACGAAGCGTCTGGAGAGTACAGAAATGAGAACTTAC
TTTTTCAAGAGATATCGAGGCTATCTCGCTGGTTGTGGCTTTGTATACAG
TCTTCTTAGTGCCGTTCCATTTCTTGGCATTCCTTTGACTCTTATATCAG
AATGCGGTGCCGCTTGTTTAGTCACAGAGATAGTTCAAAGAAATCTCGAC
AAGGAATTCCGAAAGCCATTGACTTGTGAAGAAGCAATTCAGGACAAGAA
GCAGTCTTGA
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protein sequence of Ggra1485.t1

>Ggra1485.t1 ID=Ggra1485.t1|Name=Ggra1485.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=320bp
MSAAAIEADGSGIHAKKDASHGAFYSGFVKGMVAAVDGIKLFARSEVLQK
QFWQLMKPIRNAQIAYGSAGVLLFLILRDPADDITELFWTISRWGRIVTV
LTSIILEYQYGATSAMFFAALKERDPEFGAAVENRPKTRKSFREKLSGFK
RAAKLTMFKLAGAIVQRVFPGGKYIAVPAIKFISIRPVLGTGIAAAVSAV
HAIPAEILESSRVDDVLVSFGEAVVDADEAGEESVADYTKRLESTEMRTY
FFKRYRGYLAGCGFVYSLLSAVPFLGIPLTLISECGAACLVTEIVQRNLD
KEFRKPLTCEEAIQDKKQS*
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mRNA from alignment at tig00000844_pilon:214699..215658+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1485.t1 ID=Ggra1485.t1|Name=Ggra1485.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=960bp|location=Sequence derived from alignment at tig00000844_pilon:214699..215658+ (Gracilaria gracilis GNS1m male)
ATGTCTGCTGCCGCGATCGAAGCTGATGGTTCAGGTATTCACGCAAAGAA
AGATGCGTCGCACGGTGCTTTCTATTCAGGCTTCGTAAAGGGAATGGTCG
CTGCTGTAGATGGTATTAAGCTCTTTGCTCGGTCTGAGGTCCTCCAAAAA
CAATTCTGGCAACTCATGAAACCCATTCGCAACGCCCAAATTGCATACGG
CTCAGCGGGAGTTCTCTTGTTCCTGATTCTCCGTGATCCGGCAGATGACA
TTACTGAGCTCTTCTGGACTATTTCTCGCTGGGGTCGTATTGTCACGGTA
CTTACGTCCATCATACTGGAATATCAGTATGGTGCTACCTCTGCTATGTT
TTTCGCCGCCCTGAAAGAGCGTGATCCAGAGTTTGGTGCAGCTGTTGAAA
ATCGCCCGAAGACGCGAAAAAGCTTTCGTGAGAAACTTTCTGGTTTTAAA
CGCGCGGCGAAGTTAACGATGTTCAAACTCGCTGGTGCCATCGTACAGAG
AGTATTTCCGGGTGGTAAGTACATCGCAGTGCCAGCTATCAAATTTATAT
CGATCAGACCTGTTCTGGGTACTGGTATAGCTGCAGCAGTTTCGGCAGTC
CACGCCATCCCTGCCGAAATACTTGAGTCATCTCGTGTAGATGATGTCTT
AGTTTCCTTCGGGGAAGCAGTTGTTGACGCTGATGAAGCGGGCGAGGAAT
CTGTGGCGGATTACACGAAGCGTCTGGAGAGTACAGAAATGAGAACTTAC
TTTTTCAAGAGATATCGAGGCTATCTCGCTGGTTGTGGCTTTGTATACAG
TCTTCTTAGTGCCGTTCCATTTCTTGGCATTCCTTTGACTCTTATATCAG
AATGCGGTGCCGCTTGTTTAGTCACAGAGATAGTTCAAAGAAATCTCGAC
AAGGAATTCCGAAAGCCATTGACTTGTGAAGAAGCAATTCAGGACAAGAA
GCAGTCTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:214699..215658+

>Ggra1485.t1 ID=Ggra1485.t1|Name=Ggra1485.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=960bp|location=Sequence derived from alignment at tig00000844_pilon:214699..215658+ (Gracilaria gracilis GNS1m male)
ATGTCTGCTGCCGCGATCGAAGCTGATGGTTCAGGTATTCACGCAAAGAA
AGATGCGTCGCACGGTGCTTTCTATTCAGGCTTCGTAAAGGGAATGGTCG
CTGCTGTAGATGGTATTAAGCTCTTTGCTCGGTCTGAGGTCCTCCAAAAA
CAATTCTGGCAACTCATGAAACCCATTCGCAACGCCCAAATTGCATACGG
CTCAGCGGGAGTTCTCTTGTTCCTGATTCTCCGTGATCCGGCAGATGACA
TTACTGAGCTCTTCTGGACTATTTCTCGCTGGGGTCGTATTGTCACGGTA
CTTACGTCCATCATACTGGAATATCAGTATGGTGCTACCTCTGCTATGTT
TTTCGCCGCCCTGAAAGAGCGTGATCCAGAGTTTGGTGCAGCTGTTGAAA
ATCGCCCGAAGACGCGAAAAAGCTTTCGTGAGAAACTTTCTGGTTTTAAA
CGCGCGGCGAAGTTAACGATGTTCAAACTCGCTGGTGCCATCGTACAGAG
AGTATTTCCGGGTGGTAAGTACATCGCAGTGCCAGCTATCAAATTTATAT
CGATCAGACCTGTTCTGGGTACTGGTATAGCTGCAGCAGTTTCGGCAGTC
CACGCCATCCCTGCCGAAATACTTGAGTCATCTCGTGTAGATGATGTCTT
AGTTTCCTTCGGGGAAGCAGTTGTTGACGCTGATGAAGCGGGCGAGGAAT
CTGTGGCGGATTACACGAAGCGTCTGGAGAGTACAGAAATGAGAACTTAC
TTTTTCAAGAGATATCGAGGCTATCTCGCTGGTTGTGGCTTTGTATACAG
TCTTCTTAGTGCCGTTCCATTTCTTGGCATTCCTTTGACTCTTATATCAG
AATGCGGTGCCGCTTGTTTAGTCACAGAGATAGTTCAAAGAAATCTCGAC
AAGGAATTCCGAAAGCCATTGACTTGTGAAGAAGCAATTCAGGACAAGAA
GCAGTCTTGA
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