Ggra1479.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1479.t1
Unique NameGgra1479.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:203650..204504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog61459.XP_007785064.1
Preferred nametif224
PFAMsIF-2B
Max annot lvl4751|Fungi
KEGG koko:K03680
KEGG Pathwayko03013,map03013
GOsGO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005085,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0019222,GO:0019538,GO:0019899,GO:0030234,GO:0031323,GO:0031326,GO:0032045,GO:0032268,GO:0032991,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0097159,GO:0098772,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112
Evalue3.37e-11
EggNOG OGsCOG1184@1|root,KOG1467@2759|Eukaryota,38CIH@33154|Opisthokonta,3NV2M@4751|Fungi,3QPPP@4890|Ascomycota,20DVD@147545|Eurotiomycetes,3MRC6@451870|Chaetothyriomycetidae
DescriptionBelongs to the eIF-2B alpha beta delta subunits family
COG categoryJ
BRITEko00000,ko00001,ko03012
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1479Ggra1479Gracilaria gracilis GNS1m malegenetig00000844_pilon 203650..204504 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1479.t1.stop1Ggra1479.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 203650..203652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1479.t1.CDS1Ggra1479.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 203650..204504 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1479.t1.exon1Ggra1479.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 203650..204504 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1479.t1.start1Ggra1479.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 204502..204504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1479.t1Ggra1479.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 203650..204504 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1479.t1 ID=Ggra1479.t1|Name=Ggra1479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=285bp
MPSLANLPTTSTHSQSIDRPFRTTLQALRHTTDDPRDTINRHISAVFPYE
VSVRNPTLRAQRDAVQAAVTSHPQNDDSLYQVATTAMDSFLAVRINGARA
KVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVIDSAPDY
PGRALASRLASQTSAFVRYATLSAAAKALDSTHVLVIGAKEVCHNGAVLA
RKGAAVLVQIARENGLPVVVATQAVKYSDRMLVARSPDGDVIKSTEISAV
VTELDTAQWGVSEAPEVLRRVNEIEAHRVGVSPM*
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spliced messenger RNA

>Ggra1479.t1 ID=Ggra1479.t1|Name=Ggra1479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000844_pilon:203650..204504- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCGTTAGCCAACCTGCCCACCACCTCCACCCACTCTCAGTCCAT
CGATCGTCCGTTTCGCACCACGCTGCAAGCGCTGCGACACACCACGGATG
ACCCTCGAGACACCATAAACCGTCACATCTCAGCCGTCTTCCCGTACGAG
GTTTCCGTCAGAAACCCCACGCTGCGCGCTCAGAGGGATGCTGTCCAGGC
TGCTGTCACCTCGCACCCACAGAATGACGACTCCTTGTATCAAGTTGCTA
CTACGGCCATGGACTCCTTTCTAGCTGTTCGAATCAATGGCGCGCGCGCA
AAGGTGTCCGCCTTCTTCGATCTCATGTGTAGAGACCGACAGTGGTCGCA
CATAGCCGTATTCTCGGGCAGCACTGTTGTGGAGGCTTGTTTCTTAGCAC
TCAACTATCCTACAAAACGCCTCACAGTCATCGACTCAGCGCCAGACTAT
CCAGGTCGCGCTCTCGCCTCGCGACTAGCCTCTCAAACCTCCGCCTTCGT
GCGCTACGCCACCTTGAGTGCAGCTGCAAAGGCCTTGGACTCTACGCACG
TTCTAGTAATTGGCGCGAAGGAGGTCTGTCATAACGGCGCTGTTTTGGCG
CGAAAGGGGGCCGCTGTACTTGTACAAATCGCGCGCGAGAACGGCTTGCC
GGTTGTCGTAGCTACACAGGCTGTCAAGTATTCGGATCGTATGCTGGTTG
CGCGCTCACCTGATGGTGACGTTATCAAGTCCACAGAGATATCTGCAGTC
GTCACAGAACTAGATACCGCGCAGTGGGGCGTGTCTGAAGCACCAGAGGT
ACTGAGACGCGTAAATGAGATAGAAGCACATCGAGTGGGTGTTTCACCCA
TGTGA
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protein sequence of Ggra1479.t1

>Ggra1479.t1 ID=Ggra1479.t1|Name=Ggra1479.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=285bp
MPSLANLPTTSTHSQSIDRPFRTTLQALRHTTDDPRDTINRHISAVFPYE
VSVRNPTLRAQRDAVQAAVTSHPQNDDSLYQVATTAMDSFLAVRINGARA
KVSAFFDLMCRDRQWSHIAVFSGSTVVEACFLALNYPTKRLTVIDSAPDY
PGRALASRLASQTSAFVRYATLSAAAKALDSTHVLVIGAKEVCHNGAVLA
RKGAAVLVQIARENGLPVVVATQAVKYSDRMLVARSPDGDVIKSTEISAV
VTELDTAQWGVSEAPEVLRRVNEIEAHRVGVSPM*
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mRNA from alignment at tig00000844_pilon:203650..204504-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1479.t1 ID=Ggra1479.t1|Name=Ggra1479.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000844_pilon:203650..204504- (Gracilaria gracilis GNS1m male)
ATGCCGTCGTTAGCCAACCTGCCCACCACCTCCACCCACTCTCAGTCCAT
CGATCGTCCGTTTCGCACCACGCTGCAAGCGCTGCGACACACCACGGATG
ACCCTCGAGACACCATAAACCGTCACATCTCAGCCGTCTTCCCGTACGAG
GTTTCCGTCAGAAACCCCACGCTGCGCGCTCAGAGGGATGCTGTCCAGGC
TGCTGTCACCTCGCACCCACAGAATGACGACTCCTTGTATCAAGTTGCTA
CTACGGCCATGGACTCCTTTCTAGCTGTTCGAATCAATGGCGCGCGCGCA
AAGGTGTCCGCCTTCTTCGATCTCATGTGTAGAGACCGACAGTGGTCGCA
CATAGCCGTATTCTCGGGCAGCACTGTTGTGGAGGCTTGTTTCTTAGCAC
TCAACTATCCTACAAAACGCCTCACAGTCATCGACTCAGCGCCAGACTAT
CCAGGTCGCGCTCTCGCCTCGCGACTAGCCTCTCAAACCTCCGCCTTCGT
GCGCTACGCCACCTTGAGTGCAGCTGCAAAGGCCTTGGACTCTACGCACG
TTCTAGTAATTGGCGCGAAGGAGGTCTGTCATAACGGCGCTGTTTTGGCG
CGAAAGGGGGCCGCTGTACTTGTACAAATCGCGCGCGAGAACGGCTTGCC
GGTTGTCGTAGCTACACAGGCTGTCAAGTATTCGGATCGTATGCTGGTTG
CGCGCTCACCTGATGGTGACGTTATCAAGTCCACAGAGATATCTGCAGTC
GTCACAGAACTAGATACCGCGCAGTGGGGCGTGTCTGAAGCACCAGAGGT
ACTGAGACGCGTAAATGAGATAGAAGCACATCGAGTGGGTGTTTCACCCA
TGTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:203650..204504-

>Ggra1479.t1 ID=Ggra1479.t1|Name=Ggra1479.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00000844_pilon:203650..204504- (Gracilaria gracilis GNS1m male)
ATGCCGTCGTTAGCCAACCTGCCCACCACCTCCACCCACTCTCAGTCCAT
CGATCGTCCGTTTCGCACCACGCTGCAAGCGCTGCGACACACCACGGATG
ACCCTCGAGACACCATAAACCGTCACATCTCAGCCGTCTTCCCGTACGAG
GTTTCCGTCAGAAACCCCACGCTGCGCGCTCAGAGGGATGCTGTCCAGGC
TGCTGTCACCTCGCACCCACAGAATGACGACTCCTTGTATCAAGTTGCTA
CTACGGCCATGGACTCCTTTCTAGCTGTTCGAATCAATGGCGCGCGCGCA
AAGGTGTCCGCCTTCTTCGATCTCATGTGTAGAGACCGACAGTGGTCGCA
CATAGCCGTATTCTCGGGCAGCACTGTTGTGGAGGCTTGTTTCTTAGCAC
TCAACTATCCTACAAAACGCCTCACAGTCATCGACTCAGCGCCAGACTAT
CCAGGTCGCGCTCTCGCCTCGCGACTAGCCTCTCAAACCTCCGCCTTCGT
GCGCTACGCCACCTTGAGTGCAGCTGCAAAGGCCTTGGACTCTACGCACG
TTCTAGTAATTGGCGCGAAGGAGGTCTGTCATAACGGCGCTGTTTTGGCG
CGAAAGGGGGCCGCTGTACTTGTACAAATCGCGCGCGAGAACGGCTTGCC
GGTTGTCGTAGCTACACAGGCTGTCAAGTATTCGGATCGTATGCTGGTTG
CGCGCTCACCTGATGGTGACGTTATCAAGTCCACAGAGATATCTGCAGTC
GTCACAGAACTAGATACCGCGCAGTGGGGCGTGTCTGAAGCACCAGAGGT
ACTGAGACGCGTAAATGAGATAGAAGCACATCGAGTGGGTGTTTCACCCA
TGTGA
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