Ggra1477.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1477.t1
Unique NameGgra1477.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length272
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000844_piloncontigtig00000844_pilon:199126..199941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog438753.AZC_2398
Preferred namernhB
PFAMsRNase_HII
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03470
KEGG Pathwayko03030,map03030
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004523,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006273,GO:0006281,GO:0006298,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0019439,GO:0022616,GO:0032299,GO:0032991,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0034655,GO:0043137,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1901361,GO:1901575,GO:1901576
Evalue4.14e-39
EggNOG OGsCOG0164@1|root,COG0164@2|Bacteria,1RA65@1224|Proteobacteria,2U73X@28211|Alphaproteobacteria,3EZ6V@335928|Xanthobacteraceae
EC3.1.26.4
DescriptionEndonuclease that specifically degrades the RNA of RNA- DNA hybrids
COG categoryL
BRITEko00000,ko00001,ko01000,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1477Ggra1477Gracilaria gracilis GNS1m malegenetig00000844_pilon 199126..199941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1477.t1.stop1Ggra1477.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000844_pilon 199126..199128 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1477.t1.CDS1Ggra1477.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000844_pilon 199126..199941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1477.t1.exon1Ggra1477.t1.exon1Gracilaria gracilis GNS1m maleexontig00000844_pilon 199126..199941 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1477.t1.start1Ggra1477.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000844_pilon 199939..199941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1477.t1Ggra1477.t1Gracilaria gracilis GNS1m malepolypeptidetig00000844_pilon 199126..199941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1477.t1 ID=Ggra1477.t1|Name=Ggra1477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=272bp
MGDGAAACFAPAPPVRTAVRLTGGARAAAASATSSSATKKAPGAAARRAT
LQRDGARQLARAERLIAGCDEAGAGALAGPLVAAAVMLDTAAAAAPLASS
PFPALLDDSKRLSRLQRAKVFQHVCRHPALSVAHCVVAPSVVDRHNVLNA
RLAAMADAVLLLPASPQLLYVDGHLTLPRLSCAQRAVVRGDALLCLVAAA
GVVAKVLRDDIMLQYAHQYPRYAFERNVGYPTSDHRAALDKYGPCAIHRL
SYKPVRDAATARRGDTSWSSV*
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spliced messenger RNA

>Ggra1477.t1 ID=Ggra1477.t1|Name=Ggra1477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:199126..199941- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGACGGCGCGGCGGCTTGCTTCGCGCCGGCGCCGCCGGTGCGCAC
GGCCGTTCGCCTCACCGGCGGCGCGCGCGCGGCGGCGGCGTCGGCGACGA
GCAGCAGCGCGACGAAGAAGGCACCCGGCGCGGCGGCGCGCCGCGCCACG
CTGCAGCGCGACGGCGCGCGGCAGCTCGCGCGCGCAGAGCGGCTTATCGC
CGGGTGCGACGAGGCGGGCGCGGGCGCGCTGGCCGGCCCGCTGGTGGCGG
CCGCCGTCATGCTGGACACGGCCGCCGCCGCCGCGCCGCTCGCCTCCTCG
CCGTTCCCGGCGCTGCTGGATGACTCCAAGCGACTGTCGCGCTTGCAGCG
CGCGAAAGTGTTCCAACACGTCTGCCGACACCCCGCGCTCAGCGTGGCGC
ATTGCGTGGTGGCGCCTTCGGTTGTGGACCGCCACAACGTGCTCAACGCG
CGTCTGGCCGCCATGGCCGACGCCGTGCTGCTGCTGCCTGCGTCGCCGCA
GCTGCTCTACGTCGACGGCCACCTCACGCTGCCGCGCTTGTCGTGTGCGC
AGCGCGCCGTTGTGCGAGGCGATGCGCTGCTCTGCTTGGTTGCTGCTGCT
GGAGTGGTCGCAAAGGTGCTGCGCGATGATATCATGCTGCAGTATGCGCA
CCAGTATCCGCGCTACGCCTTCGAGCGCAACGTTGGTTACCCCACAAGCG
ATCACCGCGCCGCTCTCGACAAGTACGGTCCGTGCGCCATCCACCGCCTG
TCGTACAAACCAGTTCGCGATGCGGCCACCGCTCGCCGAGGCGATACGTC
ATGGTCATCTGTTTGA
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protein sequence of Ggra1477.t1

>Ggra1477.t1 ID=Ggra1477.t1|Name=Ggra1477.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=272bp
MGDGAAACFAPAPPVRTAVRLTGGARAAAASATSSSATKKAPGAAARRAT
LQRDGARQLARAERLIAGCDEAGAGALAGPLVAAAVMLDTAAAAAPLASS
PFPALLDDSKRLSRLQRAKVFQHVCRHPALSVAHCVVAPSVVDRHNVLNA
RLAAMADAVLLLPASPQLLYVDGHLTLPRLSCAQRAVVRGDALLCLVAAA
GVVAKVLRDDIMLQYAHQYPRYAFERNVGYPTSDHRAALDKYGPCAIHRL
SYKPVRDAATARRGDTSWSSV*
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mRNA from alignment at tig00000844_pilon:199126..199941-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1477.t1 ID=Ggra1477.t1|Name=Ggra1477.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:199126..199941- (Gracilaria gracilis GNS1m male)
ATGGGCGACGGCGCGGCGGCTTGCTTCGCGCCGGCGCCGCCGGTGCGCAC
GGCCGTTCGCCTCACCGGCGGCGCGCGCGCGGCGGCGGCGTCGGCGACGA
GCAGCAGCGCGACGAAGAAGGCACCCGGCGCGGCGGCGCGCCGCGCCACG
CTGCAGCGCGACGGCGCGCGGCAGCTCGCGCGCGCAGAGCGGCTTATCGC
CGGGTGCGACGAGGCGGGCGCGGGCGCGCTGGCCGGCCCGCTGGTGGCGG
CCGCCGTCATGCTGGACACGGCCGCCGCCGCCGCGCCGCTCGCCTCCTCG
CCGTTCCCGGCGCTGCTGGATGACTCCAAGCGACTGTCGCGCTTGCAGCG
CGCGAAAGTGTTCCAACACGTCTGCCGACACCCCGCGCTCAGCGTGGCGC
ATTGCGTGGTGGCGCCTTCGGTTGTGGACCGCCACAACGTGCTCAACGCG
CGTCTGGCCGCCATGGCCGACGCCGTGCTGCTGCTGCCTGCGTCGCCGCA
GCTGCTCTACGTCGACGGCCACCTCACGCTGCCGCGCTTGTCGTGTGCGC
AGCGCGCCGTTGTGCGAGGCGATGCGCTGCTCTGCTTGGTTGCTGCTGCT
GGAGTGGTCGCAAAGGTGCTGCGCGATGATATCATGCTGCAGTATGCGCA
CCAGTATCCGCGCTACGCCTTCGAGCGCAACGTTGGTTACCCCACAAGCG
ATCACCGCGCCGCTCTCGACAAGTACGGTCCGTGCGCCATCCACCGCCTG
TCGTACAAACCAGTTCGCGATGCGGCCACCGCTCGCCGAGGCGATACGTC
ATGGTCATCTGTTTGA
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Coding sequence (CDS) from alignment at tig00000844_pilon:199126..199941-

>Ggra1477.t1 ID=Ggra1477.t1|Name=Ggra1477.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=816bp|location=Sequence derived from alignment at tig00000844_pilon:199126..199941- (Gracilaria gracilis GNS1m male)
ATGGGCGACGGCGCGGCGGCTTGCTTCGCGCCGGCGCCGCCGGTGCGCAC
GGCCGTTCGCCTCACCGGCGGCGCGCGCGCGGCGGCGGCGTCGGCGACGA
GCAGCAGCGCGACGAAGAAGGCACCCGGCGCGGCGGCGCGCCGCGCCACG
CTGCAGCGCGACGGCGCGCGGCAGCTCGCGCGCGCAGAGCGGCTTATCGC
CGGGTGCGACGAGGCGGGCGCGGGCGCGCTGGCCGGCCCGCTGGTGGCGG
CCGCCGTCATGCTGGACACGGCCGCCGCCGCCGCGCCGCTCGCCTCCTCG
CCGTTCCCGGCGCTGCTGGATGACTCCAAGCGACTGTCGCGCTTGCAGCG
CGCGAAAGTGTTCCAACACGTCTGCCGACACCCCGCGCTCAGCGTGGCGC
ATTGCGTGGTGGCGCCTTCGGTTGTGGACCGCCACAACGTGCTCAACGCG
CGTCTGGCCGCCATGGCCGACGCCGTGCTGCTGCTGCCTGCGTCGCCGCA
GCTGCTCTACGTCGACGGCCACCTCACGCTGCCGCGCTTGTCGTGTGCGC
AGCGCGCCGTTGTGCGAGGCGATGCGCTGCTCTGCTTGGTTGCTGCTGCT
GGAGTGGTCGCAAAGGTGCTGCGCGATGATATCATGCTGCAGTATGCGCA
CCAGTATCCGCGCTACGCCTTCGAGCGCAACGTTGGTTACCCCACAAGCG
ATCACCGCGCCGCTCTCGACAAGTACGGTCCGTGCGCCATCCACCGCCTG
TCGTACAAACCAGTTCGCGATGCGGCCACCGCTCGCCGAGGCGATACGTC
ATGGTCATCTGTTTGA
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